2010 and earlier
2010
Doctorate granted by the institution, prepared within the institution
Piquet, A.M.-T., 2010. Mild climate, harsh times for polar marine microbes. Promotores: Prof.dr. A.G.J. Buma, prof. dr ir H.J.W. de Baar; co-promotor: Dr. H. Bolhuis, University of Groningen - electronic version
Middag, R., 2010. Dissolved aluminium and manganese in the Polar Oceans. Promotor: Prof.dr. H.J.W. de Baar - electronic version
Laan-Luijkx, I. T. van der, 2010. Atmospheric oxygen and the global carbon cycle. Promotores: Prof.dr. H.A.J. Meijer, Prof.dr. ir. H.J.W. de Baar - electronic version
Laan S. van der, 2010. Validation of the greenhouse gas balance of the Netherlands. Promotores: Prof.dr. H.A.J. Meijer, Prof.dr. ir. H.J.W. de Baar - electronic version
Books
Videler J.J., 2010. Bionica. Leren van de natuur
Publications in journals
Alderkamp, A.-C., Baar, H. J. W. de, Visser, R. J. W., Arrigo, K. R., 2010. Can photoinhibition control phytoplankton abundance in deeply mixed water columns of the Southern Ocean? Limnology and Oceanography 55: 1248 - 1264 - pdf
Beekmans B.W.P.M., Forcada J., Murphy E.J., Baar H.J.W. de, Bathmann U.V., Fleming A.H., 2010. Generalised additive models to investigate environmental drivers of Antarctic minke whale (Balaenoptera bonaerensis) spatial density in austral summer. J. Cetacean Res. Manage 11(2): 115–129 - pdf
Boye M., Nishioka J., Croot P., Laan P., Timmermans K.R., Volker H., Strass, Takeda S., Baar H.J.W. de, 2010. Significant portion of dissolved organic Fe complexes in fact is Fe colloids. Marine Chemistry 122: 20-27 - pdf
Brasser H.J., Strate H.J. van der, Gieskes W.W.C., Krijger G.C., Vrieling E.G., Wolterbeek H.T., 2010. Compartmental analysis suggests macropinocytosis at the onset of diatom valve formation Silicon - pdf
Hemelrijk C.K, Hildenbrandt H., Reinders J., Stamhuis E.J., 2010. Emergence of Oblong School Shape: Models and Empirical Data of Fish. Ethology 116: 1-14 - pdf
Hoppema M., Dehairs F. Navez J. Monnin C., Jeandel C., Fahrbach E. and Baar de H.J.W. 2010. Distribution of barium in the Weddell Gyre: Impact of circulation and biogeochemical processes. Marine Chemistry 122: 118–129 - pdf
Hoving, H.J.T., Lipinski, M.R., Videler, J.J., Bolstad, K.S.R., 2010. Sperm storage and mating in the deep-sea squid Taningia danae Joubin, 1931 (Oegopsida: Octopoteuthidae). Marine Biology 157: 393-400 - pdf
Hoving, H.J.T., Lipinski, M.R., Dam, L., 2010. The male reproductive strategy of a deep-sea squid: sperm allocation, continuous production, and long-term storage of spermatophores in Histioteuthis miranda: 1478-1486 Int. Council for the Exploration of the Sea - pdf
Piquet, A.M.T., Scheepens, J.F., Bolhuis, H., Wiencke, Buma, A.G.J . 2010. Variability of protistan and bacterial communities in two Arctic fjords (Spitsbergen). Polar Biol. - pdf
Piquet, A.M.T., Bolhuis, H., Davidson A.T. and Buma, A.G.J. 2010. Seasonal succession and UV sensitivity of marine bacterioplankton at an Antarctic coastal site. FEMS Microbiology Ecology, Volume 73 Issue 1: 68-82 - pdf
Poll, W.H. van de, Buma AGJ, Visser RJW, et al..2010. Xanthophyll cycle activity and photosynthesis of Dunaliella tertiolecta (Chlorophyceae) and Thalassiosira weissflogii (Bacillariophyceae) during fluctuating solar radiation. Phycologia Volume 49 ( 3) : 249-259 - pdf
Thuro'czy C.E., L.J.A.Gerringa, M.B.Klunder, R.Middag, P.Laan, K.R. Timmermans, H.J.W. de Baar, 2010. Speciation of Fe in the Eastern North Atlantic Ocean. Deep-Sea Research I 57: 1444–1453 - pdf
Ussher, Simon J., Achterberg E., Sarthou G., Laan P., Baar H.J.W. de, Worsfold P.J., 2010. Distribution of size fractionated dissolved iron in the Canary Basin. Marine Environm. Research: 70 46-55 - pdf
Videler, J.J. & He, P., Swimming in Marine Fish. In Behaviour of Marine Fishes, Pinguo He ed., Wiley-Blackwell, pp. 5-24.
2009
Docterate granted by the institution, prepared within the institution
Janknegt, P.J., 2009. Antioxidants, a radical solution? Antioxidant responses of marine microalgae to ultraviolet radiation. Promotor: Prof.dr. A.G.J. Buma, co-promotor: Prof.dr.ir. H.J.W. de Baar, University of Groningen - electronic version
Publications in journals
Agogue, H., Brink, M., Dinasquet, J., Herndl, G.J., 2009. Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic (456, p.788, 2008). Nature: 457: 500 - pdf
Amaro, T., Witte, H., Herndl, G.J., Cunha, M., Billett, D., 2009. Deep-sea bacterial communities in sediments and guts of deposit-feeding holothurians in Portuguese canyons (NE Atlantic). Deep-Sea Research I 56: 1834-1843 - pdf
Aristegui, J., Gasol, J.M., Duarte, C.M., Herndl, G.J., 2009. Microbial oceanography of the dark ocean's pelagic realm. Limnology and oceanography 54: 1501-1529 - pdf
Baltar, F., Aristegui, J., Gasol, J.M., Sintes, E., Herndl, G.J., 2009. Evidence of prokaryotic metabolism on suspended particulate organic matter in the dark waters of the (sub)tropical North Atlantic. Limnology and oceanography 54: 182-193 - pdf
Baltar, F., Aristegui, J., Sintes, E., Aken, H.M. van, Gasol, J.M., Herndl, G.J., 2009. Prokaryotic extracellular enzymatic activity in relation to biomass production and respiration in the meso- and bathypelagic waters of the (sub)tropical Atlantic. Environmental Microbiology 11: 1998-2014 - pdf
Boer, M.K. de, Tyl, M.R., Fu, M., Kulk, G., Liebezeit, G., Tomas, C.R., Lenzi, A., Naar, J., Vrieling, E.G., Rijssel, M. van, 2009. Haemolytic activity within the species Fibrocapsa japonica (Raphidophyceae). Harmful Algae 8: 699-705 - pdf
Bonilla-Findji, O., Herndl, G.J., Gattuso, J.P., Weinbauer, M.G., 2009. Viral and flagellate control of prokaryotic production and community structure in offshore mediterranean waters. Applied and Environmental Microbiology 75: 4801-4812 - pdf
Brauer, V. S., Jonge, V. N. de, Buma, A. G. J., Weissing, F. J., 2009. Does universal temperature dependence apply to communities? An experimental test using natural marine plankton assemblages. OIKOS 118: 1102-1108 - pdf
Buma, A.G.J., Sjollema, S.B., Poll, W.H. van de, Klamer, J.C., Bakker, J.F., 2009. Impact of the antifouling agent Irgarol 1051 on marine phytoplankton species. Journal of Sea Research 61: 133-139 - pdf
Buma, A.G.J., Visser, R.J.W., Poll, W.H. van de, Villafane, V.E., Janknegt, P.J., Helbling, E.W., 2009. Wavelength-dependent xanthophyll cycle activity in marine microalgae exposed to natural ultraviolet radiation. European Journal of Phycology 44: 515-524 - pdf
Calleja, M.L., Duarte, C.M., Prairie, Y.T., Agusti, S., Herndl, G.J., 2009. Evidence for surface organic matter modulation of air-sea CO2 gas exchange. Biogeosciences 6: 1105-1114 - pdf
De Corte, D., Yokokawa, T., Varela, M.M., Agogue, H., Herndl, G.J., 2009. Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranea Sea. ISME Journal 3: 147-158 - pdf
Herfort, L., Kim, J.H., Coolen, M.J.L., Abbas, B., Schouten, S., Herndl, G.J., Sinninghe Damste, J.S., 2009. Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Tet. Aquatic Microbial Ecology 55: 189-201 - pdf
Hoving, H. J. T., Lipinski, M. R., 2009. Female reproductive biology, and age of deep-sea squid Histioteuthis miranda from southern Africa. ICES Journal of Marine Science 66: 1868 - 1872 - pdf
Hoving, H.J.T., Nauwelaerts, S., Genne, B. van, Stamhuis, E.J., Zumholz, K., 2009. Spermatophore implantation in Rossia moelleri Steenstrup, 1856 (Sepiolidae; Cephalopoda). Journal of Experimental Marine Biology and Ecology 372: 75-81 - pdf
Janknegt, P.J., Graaff, C.M., Poll, W.H. van de, Visser, R.J.W., Helbling, E.W., Buma, A.G.J., 2009. Antioxidative responses of two marine microalgae during acclimation to static and fluctuating natural UV radiation. Photochemistry and Photobiology 85: 1336-1345 - pdf
Janknegt, P.J., Graaff, M. de, Poll, W.H. van de, Visser, R.J.W., Rijstenbil, J.W., Buma, A.G.J., 2009. Short-term antioxidative responses of 15 microalgae exposed to excessive irradiance including ultraviolet radiation. European Journal of Phycology 44: 525-539 - pdf
Middag, R., Baar, H.J,W. de, Laan, P., Bakker, K., 2009. Dissolved aluminium and the silicon cycle in the Arctic Ocean. Marine Chemistry 115: 176-195 - pdf
Poll, W.H. van de, Buma, A.G.J., 2009. Does ultraviolet radiation affect the xanthophyll cycle in marine phytoplankton? Photochemical and Photobiological Sciences 8: 1295-1301 - pdf
Poll, W. H. van de, Janknegt, P. J., Leeuwe, M. A. van, Visser, R. J. W., Buma, A. G. J., 2009. Excessive irradiance and antioxidant responses of an Antarctic marine diatom exposed to iron limitation and to dynamic irradiance. Journal of Photochemistry and Photobiology B:Biology 94: 32-37 - pdf
Prow, A.E.F., Thomas, H., Pätsch, J., Kühn, W., Bozec, Y., Schiettecatte, L.-S., Borges, A.V., Baar, H.J.W. de., 2009. Mechanisms controlling the air-sea CO2 flux in the North Sea. Continental Shelf Research 29: 1801-1808 - pdf
Takahashi, T., Sutherland, S.C., Wanninkhof, R., Sweeney, C., Feely, R.A., Chipman, D.W., Hales, B., Friederich, G., Chavez, F., Sabine, C., Watson, A., Bakker, D.C.E., Schuster, U., Metzl, N., Yoshikawa-Inoue, H., Ishii, M., Midorikawa, T., Nojiri, Y., Körtzingerm, A., Steinhoffm, T., Hoppema, M., Olafsson, J., Arnarson, T.S., Tilbrook, B., Johannessen, T., Olsen, A., Bellerby., R., Wong, C.S., Delille, B., Bates, N.R., de Baar, H.J.W., 2009. Climatological mean and decadal change in surface ocean pCO2, and net sea-air CO2 flux over the global oceans. Deep-Sea Research II 56: 554 - 577 - pdf
Takahashi, T., Sutherland, S.C., Wanninkhof, R., Sweeney, C., Feely, R.A. , Chipman, D.W., Hales, B., Friederich, G., Chavez, F., Sabine, C., Watson, A., Bakker, D.C.E., Schuster, U., Metzl, N., Yoshikawa-Inoue, H., Ishii, M., Midorikawa, T., Nojiri, Y., Körtzingerm, A., Steinhoffm, T., Hoppema, M., Olafsson, J., Arnarson, T.S., Tilbrook, B., Johannessen, T., Olsen, A., Bellerby., R., Wong, C.S., Delille, B., Bates, N.R., de Baar, H.J.W., 2009. Corrigendium to “Climatological mean and decadal change in surface ocean pCO2, and net sea-air CO2 flux over the global oceans” [Deep Sea Res. II 56 (2009) 554-577]. Deep-Sea Research I 56: 2075-2076 - pdf
Thomas, H., Schiettecatte, L.-S., Suykens, K., Kon´e, Y. J. M., Shadwick, E. H., Prowe, A. E. F., Bozec, Y., Baar, H. J. W. de, Borges, A. V., 2009. Enhanced ocean carbon storage from anaerobic alkalinity generation in coastal sediments. Biogeosciences 6 : 267-274 - pdf
Troost, K., Stamhuis, E.J., Duren, L.A. van, Wolff, W.J., 2009. Feeding current characteristics of three morphological different bivalve suspension feeders, Crassostrea gigas, Mytilus edulis and Cerastoderma edule, in relation to food competition. Marine Biology 156: 355-372 - pdf
Weinbauer, M.G., Arrieta, J.M., Griebler, C., Herndl, G.J., 2009. Enhanced viral production and infection of bacterioplankton during an iron-induced phytoplankton bloom in the Southern Ocean. Limnology and oceanography 54: 774-784 - pdf
Wilhartitz, I., Kirschner, A.K.T., Stadler, H., Herndl, G.J., Dietzel, M., Latal, C., Mach, R.L., Farnleiter, A.H., 2009. Heterotrophic prokaryotic production in ultraoligotrophic alpine karst aquifers and ecological implications. FEMS microbiology ecology 68: 287-299 - pdf
Zemmelink, H.J., Slagter, H.A., Slooten, C. van, Snoek, J., Heusinkveld, B., Elbers, J., Brink, N.J., Klaassen, W., Philippart, C.J. M., Baar, H.J.W. de, 2009. Primary production and eddy correlation measurements of CO2 exchange over an intertidal estuary. Geophysical research letters 36: L19606 - pdf
Zhang, Y., Sintes, E., Chen, M.N., Zhang, Y., Dai, M., Jiao, N., Herndl, G.J., 2009. Role of mesoscale cyclonic eddies in the distribution and activity of Archaea and Bacteria in the South China Sea. Aquatic Microbial Ecology 56: 65-79 - pdf
2008
Doctorate granted by the institution, prepared within the institution
Hoving, H.J.T., 2008. Reproductive biology of oceanic decapodiform cephalopods. Promotor: Prof.dr. J.J. Videler, co-promotor: Dr. M.R. Lipinkski, University of Groningen - abstract
Publications in journals
Agogué, H., Brink, M., Dinasquet, J., Herndl, G.J., 2008. Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456: 788-791 - pdf
Baar, H.J.W. de, Gerringa, L.J.A., Laan, P., Timmermans, K.R., 2008. Efficiency of carbon removal per added iron in ocean iron fertilization. Marine Ecology Progress Series 364 : 269-282 - pdf
Baar, H.J.W. de, Timmermans, K.R., Laan, P., de Porto, H.H., Ober, S., Blom, J.J., Bakker, M.C., Schilling, J., Sarthou, G., Smit, M.G., Klunder, M., 2008. Titan: A new facility for ultraclean sampling of trace elements and isotopes in the deep oceans in the international Geotraces program. Marine Chemistry 111 : 4-21 - pdf
Bakker, D.C.E., Hoppema, M., Schroder, M., Geibert, W., Baar, H.J.W. de, 2008. A rapid transition from ice covered CO2-rich waters to a biologically mediated CO2 sink in the eastern Weddell Gyre. Biogeosciences 5 : 1373-1386 - pdf
Buesseler, K.O., Doney, S.C., Karl, D.M., Boyd, P.W., Caldeira, K., Chai, F., Coale, K.H., Baar, H.J.W. de, Falkowski, P.G., Johnson, K.S., Lampitt, R.S., Michaels, A.F., Naqvi, S.W.A., Smetacek, V., Takeda, S., Watson, A.J., 2008. Ocean iron fertilization - Moving forward in a sea of uncertainty. Science 319 : 162-162 - pdf
Gasol, J.M., J. Pinhassi, L. Alonso-Sáez, H. Ducklow, G.J. Herndl, M. Koblizek, M. Labrenz, Y. Luo, X.A.G. Moran, T. Reinthaler, M. Simon, 2008. Towards a better understanding of the microbial carbon flux in the sea. Aquatic Microbial Ecology 53: 21-38
Grote, J., Jost, G., Labrenz, M., Herndl, G.J., Jürgens, K., 2008. Epsilonproteobacteria represent the major portion of chemoautotrophic bacteria in sulfidic waters of pelagic redoxclines of the Baltic and Black Seas. Applied and Environmental Microbiology 74: 7546-7551
Helbling, E.W., Buma, A.G.J., Poll, W. van de, Zenoff, M.V.F., Villafañe, V.E., (2008). UVR-induced photosynthetic inhibition dominates over DNA damage in marine dinoflagellates exposed to fluctuating solar radiation regimes. Journal of Experimental Marine Biology and Ecology 365: 96-102 - pdf
Heredia, A., Van der Strate, H.J., Delgadillo, I., Basiuk, V.A., Vrieling, E.G., 2008. Analysis of organo–silica interactions during valve formation in synchronously growing cells of the diatom Navicula pelliculosa. ChemBioChem 9: 573-584 - pdf
Herndl, G.J., H. Agogué, F. Baltar, T. Reinthaler, E. Sintes, M.M. Varela, 2008. Regulation of aquatic microbial processes: the ‘microbial loop of the sunlit surface waters and the dark ocean dissected. Aquatic Microbial Ecology 53: 59-68 - pdf
Hoving, H.J.T., Lipinski, M.R., Videler, J.J., 2008. Reproductive system and the spermatophoric reaction of the mesopelagic squid Octopoteuthis sicula (Rüppell 1844) (Cephalopoda: Octopoteuthidae) from southern African waters. African Journal of Marine Science 30: 603-612 - pdf
Hoving,H. J. T., Laptikhovsky,V., Piatkowski, U., Önsoy, B., 2008. Reproduction in Heteroteuthis dispar (Rüppell, 1844) (Mollusca: Cephalopoda): a sepiolid reproductive adaptation to an oceanic lifestyle. Marine Biology 154: 219–230 - pdf
Iglesias-Rodriguez, M.D., Buitenhuis, E.T., Raven, J.A., Schofield, O., Poulton, A.J., Gibbs, S., Halloran, P.R., Baar, H.J.W. de, 2008. Response to Comment on "Phytoplankton Calcification in a High-CO2 World". Science 322 : 1466
Janknegt, P.J., Poll, W. H. van de, Visser, R.J.W., Rijstenbil, J.W., Buma, A.G.J., 2008. Oxidative stress responses in the marine Antarctic diatom Chaetoceros brevis (Bacillariophyceae) during photoacclimation. Journal of Phycology 44: 957-966
Laptikhovsky, V.V., Nigmatullin, Ch. M., Hoving, H.J.T., Onsoy, B., Salman, A., Zumholz, K., Shevtsov, G.A., 2008. Reproductive strategies in female polar and deep-sea bobtail squid genera Rossia and Neorossia (Cephalopoda: Sepiolidae). Polar Biology 31:1499–1507 - pdf
Leeuwe, M.A. van, Brotas, V., Consalvey, M., Forster, R.M., Gillespie, D., Jesus, B., Roggeveld, J., Gieskes, W.W.C., 2008. Photoacclimation in microphytobenthos and the role of xanthophyll pigments. European Journal of Phycology 43: 123-132
Parada, V., A.-C. Baudoux, E. Sintes, M.G. Weinbauer, G.J. Herndl, 2008. Dynamics and diversity of newly produced virioplankton in the North Sea. ISME Journal 2 : 924-936 - pdf
Piquet, A. M.-T., Bolhuis, H., Davidson, A. T., Thomson, P.G., Buma, A.G.J., 2008. Diversity and dynamics of Antarctic marine microbial eukaryotes under manipulated environmental UV radiation. FEMS microbiology ecology 66: 352-366 - pdf
Reinthaler,T., Sintes, E., Herndl, G.J., 2008. Dissolved organic matter and bacterial production and respiration in the sea-surface microlayer of the open Atlantic and the western Mediterranean Sea. Limnology and Oceanography 53: 122-136
Rijkenberg, M. J. A., Gerringa, L. J. A., Timmermans, K. R., Fischer, A. C., Kroon, K. J., Buma, A. G. J., Wolterbeek, B. T., Baar, H. J. W. de. 2008. Enhancement of the reactive iron pool by marine diatoms. Marine Chemistry 109: 29-44
Rijssel, M. van, Boer, M.K.de, Tyl, M.R., Gieskes, W.W.C., 2008. Evidence for inhibition of bacterial luminescence by allelochemicals from Fibrocapsa japonica (Raphidophyceae), and the role of light and microalgal growth rate. Hydrobiologia 596: 289 - 299 - pdf
Timmermans, K.R., Woerd, H.J. van der, Wernand, M.R., Sligting, M., Uitz, J., Baar, H.J.W. de, 2008. In situ and remote-sensed chlorophyll fluorescence as indicator of the physiological state of phytoplankton near the Isles Kerguelen (Southern Ocean). Polar Biology 31: 617-628 - pdf
Troost, K., Veldhuizen, R., Stamhuis, E J & Wolff, W.J., 2008. Can bivalve veligers escape feeding currents of adult bivalves? Journal of Experimental Marine Biology and Ecology 358: 185-196 - pdf
Varela, M.M., H.M. van Aken, G.J. Herndl, 2008. Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub)tropical Atlantic. Environmental Microbiology 10: 1903-1911 - pdf
Varela, M.M., Aken, H.M., van, Sintes, E., Herndl, G.J., 2008. Latitudinal trends of Crenarchaeota and Bacteria in the meso- and bathypelagic water masses of the Eastern North Atlantic. Environmental Microbiology 10 : 110-124 - pdf
Villafañe, V.E., Janknegt, P.J., Graaff, M. de, Visser, R.J.W., Poll, W.H. van de, Buma, A.G. J., Helbling, E.W., 2008. UVR-induced photoinhibition of summer marine phytoplankton communities from Patagonia. Marine Biology 154:1021–1029 - pdf
Winter, C., M.M. Moeseneder, G.J. Herndl, M.G. Weinbauer, 2008. Relationship of geographic distance, depth, temperature, and viruses with prokaryotic communities in the eastern tropical Atlantic Ocean. Microbial Ecology 56: 383-389 -
Wong, G.T.F., Anderson, R.F., Bacon, M.P., de Baar, H.J.W., Murray, J.W., Scranton, M.I., 2008. A tribute to Peter George Brewer in celebration of his 65th birthday. Marine Chemistry 111: 1-3 - pdf
Yeloff, D., Blokker, P., Boelen, P., Rozema, J., 2008. Is pollen morphology of Salix polaris affected by enhanced UV-B irradiation? Results from a field experiment in high Arctic tundra. Arctic, Antarctic and Alpine Research 40: 770-774
2007
Doctorate granted by the institution, prepared at another institution
Baudoux, C.A., 2007. The role of viruses in marine phytoplankton mortality. Promotor: Prof. dr. G.J. Herndl, co-promotor: Dr. C. Brussaard, University of Groningen - electric version
Publications in journals
Alderkamp, A.-C., Rijssel, M. van, Bolhuis, H., 2007. Characterization of marine bacteria and the activity of their enzyme systems involved in degradation of the algal storage glucan laminarin. FEMS Microbiology Ecology 59: 108-117 - pdf
Alderkamp, A.-C., Buma, A.G.J., Rijssel, M. van, 2007. The carbohydrates of Phaeocystis and their degradation in the microbial food web. Biogeochemistry 83: 99 -118
Arrieta , J.M., Weinbauer, M.G., Herndl, G.J., 2007. Response to “Interpreting the results of oceanic mesoscale enrichment experiments: caveats and lessons from limnology and coastal ecology” by M.S. Hale and R.B. Rivkin. Limnology and Oceanography 52: 916 -118
Baltar, F., Aristegui, J., Gasol, J.M., Hernandez-Leon, S., Herndl, G.J., 2007. Strong coast – ocean and surface – depth gradients in prokaryotic assemblage structure and activity in a coastal transition zone region. Aquatic Microbial Ecology 50: 63-74 - pdf
Boyd, P.W., Jickells, S., Law, C.S., Blain, S., Boyle, E. A., Buesseler, K.O., Coale, K.H., Cullen, J.J., Baar, H.J.W. de, Follows, M., Harvey, M., Lancelot, C., Levasseur, M., Owens, N.P.J., Pollard, R., Rivkin, R.B., Sarmiento, J., Schoemann, V., Smetacek, V., Takeda, S., Tsuda, A., Turner, S., Watson, A. J., 2007. Mesoscale iron enrichment experiments 1993-2005: Synthesis and future directions. Science 315: 612-617 - pdf
Brauer, V.S, Schärer, L., Michiels, N.K., 2007. Phenotypically flexible sex allocation in a simultaneous hermaphrodite. Evolution 61: 216-222 - pdf
Carlson , C.A. , Del Giorgio, P.A., Herndl, G.J., 2007. Microbes and dissipation of energy and repiration: from cells to ecosystems. Oceanography 20: 89-100
Gerringa, L.J.A., Rijkenberg. M.J.A., Wolterbeek, H. Th., Verburg, T.G., Boye, M., Baar, H.J.W. de, 2007. Kinetic study reveals weak Fe-binding ligand, which affects the solubility of Fe in the Scheldt estuary. Marine Chemistry 103: 30-45
Gieskes, W.W.C., Leterme, S.C., Peletier, H., Edwards, M., Reid, P.C., 2007. Phaeocystis colony distribution in the North Atlantic Ocean since 1948, and interpretation of long-term changes in the Phaeocystis hotspot in the North Sea. Biogeochemistry 83: 49-60 - pdf
Herfort, L., Schouten, S., Abbas, B., Veldhuis, M.J.W., Coolen, M.J.L., Wuchter, J.P., Boon, G.J., Herndl, G.J., Sinninghe Damsté, J.S., 2007. Variations in spatial and temporal distribution of Archaea in the North Sea in relation to environmental variables. FEMS Microbiology Ecology 62: 242 - 257 - pdf
Hoppema, M., Middag, R., Baar, H.J.W.de, Fahrbach, E., Weerle, E.M. van, Thomas, H., 2007. Whole season net community production in the Weddle Sea. Polar Biology 31: 101- 111 - pdf
Hoving, H.J.T., Laptikhovsky, V., 2007. Getting under the skin: autonomous implantation of squid spermatophores. Biological Bulletin 212: 177-179 - pdf
Hoving, H.J.T., Lipinski, M.R., Roeleveld, M.A.C., Durholtz, M.D., 2007. Growth and mating of southern African Lycoteuthis lorigera (Steenstrup, 1875) (Cephalopoda; Lycoteuthidae). Rev Fish Biol Fisheries 17: 259-270 -
Janknegt, P.J., Rijstenbil, J.W., Poll, W.H. van de, Gechev, T.S., Buma, A.G.J., 2007. Comparison of quantitative and qualitative Superoxide dismutase assays for application to low temperature micoalgae. Journal of Photochemistry and Photobiology B. Biology 87: 218-226 - pdf
Jong, J.T.M. de, Boyé, M., Gelado-Caballero, M.D., Timmermans, K.R., Veldhuis, M.J.W., Nolting, R.F., Berg, C.M.G. van den, Baar, H.J.W. de, 2007. Inputs of iron, manganese and aluminium to surface waters of the Northeast Atlantic Ocean and the European continental shelf. Marine Chemistry 107:120–142 -
Laë s, A., Blain, S., Laan, P., Ussher, S. J., Achterberg, E. P., Tr´eguer, P., Baar, H. J. W. de, 2007. Sources and transport of dissolved iron and manganese along the continental margin of the Bay of Biscay. Biogeosciences 4:181-194 - pdf
Laptikhovsky, V., Arkhipkin, A.I., H.J.T.Hoving, 2007. Reproductive biology in two deep-sea squids. Marine Biology 152: 981-990 - pdf
Leeuwe, M.A. van, Stefels, J., 2007. Photosynthetic responses in Phaeocystis antarctica towards varying light and iron conditions. Biogeochemistry 83: 61-70 - pdf
Lentink, D., Muller, U. K., Stamhuis, E. J., de Kat, R., van Gestel, W., Veldhuis, L. L. M., Henningsson, P., Hedenstrom, A., Videler, J. J., van Leeuwen, J. L.,2007. How swifts control their glide performance with morphing wings. Nature 446 (7139): 1082-1085 - pdf
Parada, V., Sintes, E., Aken, H.M. van, Weinbauer, M.G., Herndl, G.J., 2007. Viral abundance, decay and diversity in the meso-and bathypelagic waters in the North Atlantic. Appl. Environ. Microbiol. 73: 4429- 4438 - pdf
Pinnegar, J.K., Polunin, N.V.C., Videler, J.J., Wiljes, J.J. de, 2007. Daily carbon, nitrogen and phosphorus budgets for the mediterranean damselfish Chromis chromis. Journal of Experimental Marine Biology and Ecology 352: 378-391 - pdf
Poll, W.H. van de, Visser, R.J.W., Buma, A.G.J., 2007. Acclimation to a dynamic irradiance regime changes excessive irradiance sensitivity of Emiliania huxleyi and Thalassiosira weissflogii. Limnology and Oceanography 52:1430-1438
Rijssel, M. van, Alderkamp, A.-C., Nejstgaard, J.C., Sazhin, A.F., Verity, P.G., 2007. Haemolytic activity of live Phaeocystis pouchetii during mesocosm blooms. Biogeochemistry 83: 189-200 - pdf
Sarthou, G., Baker, A .R., Kramer, J., Laan, P., Laës, A ., Ussher, S., Achterberg, E. P., Baar, H. J.W. de, Timmermans, K.R., Blain, S., 2007. Influence of atmospheric inputs on the iron distribution in the subtropical North-East Atlantic Ocean. Marine Chemistry 104: 186-202 - pdf
Stoica, E., Herndl, G.J., 2007. Bakterioplankton community composition in nearshore waters of the NW Black Sea coast during condecutive diatom and coccolithophorid blooms. Aquatic Sciences 69: 413-418 - pdf
Stoica, E., Herndl, G.J., 2007. Contribution of Crenarchaeota and Euryarchaeota to the prokaryotic plankton in the coastal northwestern Black Sea. J. Plankton Res. 29: 699-706
Ussher, S.J., Worsfold, P.J., Achterberg , E.P., Laës, A., Blain, S., Laan, P., Baar, H.J.W. de, 2007. Distribution and redox speciaton of dissolved iron on the European continental margin. Limnology and Oceanography 52: 2530-259
Verity, P.G., Brussaard, C.P., Nejstgaard, J,C., Leeuwe, M.A. van, Lancelot, C., Medlin, L.K., 2007. Current understanding of Phaeocystis ecology and biogeochemistry, and perspectives for future research. Biogeochemistry 83:311-330 - pdf
Verity, P.G., Whipple, S.J., Nejstgaard, J.C., Alderkamp, A.-C., 2007. Colony size, cell number, carbon and nitrogen contents of Phaeocystis pouchetii from western Norway. Journal of Plankton Research 29: 359-367
Vrieling, E.G., Sun, Q., Tian, M.,Kooyman, P.J., Gieskes , W.W.C., Santen, R.A. van, Sommerdijk, N.A.J.M., 2007. Salinity-dependent diatom biosilification implies an important role of external ionic strength. Proceedings of the National Academy of Sciences 104: 10441-10446
Wilhartitz, I., Mach, R., Teira, E., Reinthaler, T., Herndl, G.J., Farnleiter, A., 2007. Prokaryotic community analysis with CARD-FISH in comparison to FISH in ultra-oligotrophic ground – and drinking water. J. Appl. Microbiol. 103: 871-881 - pdf
2006
Doctorate granted by the institution, prepared within the institution
Alderkamp, A.-C., 2006. Carbohydrate production by phytoplankton and degradation in the marine microbial food web. Promotores: Prof.dr. W.J. Wolff, prof.dr. G.J. Herndl, prof.dr. W.W.C. Gieskes, University of Groningen - electronic version
Boer, M.K. de, 2006. Maze of toxicity: Fibrocapsa japonica (Raphidophyceae) in Dutch coastal waters. Promotores: Prof.dr. W.J. Wolff, prof.dr. W.W.C. Gieskes; copromotores: Dr. M. van Rijssel, dr. E.G. Vrieling, University of Groningen - abstract
Hazelaar, S., 2006. Nanoscale architecture: The role of proteins in diatom silicon biomineralization. Promotores: Prof.dr. W.W.C. Gieskes, prof.dr.ir. H.J.W. de Baar; co-promotor dr.ing. E.G. Vrieling, University of Groningen - electronic version
Doctorate granted by the institution, prepared at another institution
Reinthaler, T., 2006. Prokaryotic respiration and production in the open ocean. Promotor: Prof.dr. G.J. Herndl, University of Groningen
Publications in journals
Alderkamp, A.-C., Sintes, E., Herndl, G.J., 2006. Abundance and activity of major groups of prokaryotic plankton in the coastal North Seaduring spring and summer. Aquat.Microb. Ecol. 45: 237-246 - pdf
Alderkamp, A.-C., Nejstgaard, J.C., Verity, P.G., Zirbel, M.J., Sazhin, A.F., Rijssel, M. van, 2006. Dynamics in carbohydrate compositionof Phaeocystis pouchettii colonies during spring blooms in mesocosms. Journal of Sea Research 55: 169-181 - pdf
Boelen, P ., de Boer, M. K., de Bakker, N., Rozema. J., 2006. Outdoor studies on the effects of solar UV-B on bryophytes: overview and methodology. Plant Ecology 182: 137-152
Blokker, P., Boelen, P., Broekman, R., Rozema, J., 2006. The Occurrence of p-coumaric Acid and Ferulic Acid in Fossil Plant Materials and their Use as UV-proxy. Plant Ecology 182: 197-207 - pdf
Blokker, P., Yeloff, D., Boelen, P., Broekman, R. A., Rozema, J., 2006. The development of a proxy for historic surface UV-B radiation: A THM-py–GC/MS method for the analysis of pollen and spores. Analytical Chemistry77: 6026-6031
Bowie, A.R., Achterberg, E.P., Croot, P.L., Baar, H.J.W. de, Laan, P., Moffett, J.W., Ussher, S., Worsfold, P.J., 2006. A community-wide intercomparison exercise for the determination of dissolved iron in seawater. Marine Chemistry 98: 81-99 - pdf
Buma, A.G.J., Wright, S.W., Enden, R.van den, Poll, W.H. van den, Davidson, A.T., 2006. PAR acclimation and UVBR-induced DNA damage in Antarctic marine microalgae. Marine Ecology Progress Series 315: 33-42 - pdf
Cartaxana, P., Mendes, C.R., Leeuwe, M.A. van, Brotas, V., 2006. Comparative study on microphytobenthic pigments of muddy and sandy intertidal sediments of the Tagus estuary. Estuarine, Coastal and Shelf Science 66: 225-230 - pdf
Hoving, H.J.T., Goud, J., Gittenberger,E., Videler, J.J., 2006. A male squid, Architeuhtis spec. (Cephalopoda, Architeuthidae) from the Fladen Ground in the northern North Sea. Basteria 70: 153-160 - pdf
Hoving, H.J.T., Roeleveld, M.A.C., Lipinski, M.R., Videler, J.J., 2006. Nidamental glands in males of the oceanic squid Ancistrocheirus lesueurii (Cephalopoda: Acistrocheiridae) – sex change or intersexuality? Journal of Zoology 269: 341-348 - pdf
Jonge, V.N. de, Elliot, M., Brauer, V.S., 2006. Marine monitoring: Its shortcomings and mismatch with the EU Water Framework Directive’s objectives. Marine Pollution Bulletin 53: 5-19 - pdf
Joux, F., Agogu é , H., Obernosterer, I. , Dupuy, C., Reinthaler, T., Herndl, G.J., Lebaron, P., 2006. Microbial community structure in the sea surface microlayer at two contrasting coastal sites in the northwest Mediterranean Sea . Aquatic Microbial Ecology 42: 91-104 - pdf
Klaassen, W., Sogachev, A., 2006. Flux footprint simulation downwind of a forest edge. Boundary-Layer Meteorology 121: 459-473 - pdf
Van Leeuwe , M.A., L.A. Villerius, J. Roggeveld, R.J.W. Visser and J. Stefels, 2006. An optimized method for automated analysis of algal pigments by HPLC. Marine Chemistry 102: 267-275 - pdf
Müller W.E.G., Belikov, S.I., Tremel, W., Perry, C.C., Gieskes, W.W.C, Boreiko, A., Schroeder, H.C., 2006. Siliceous spicules in marine demosponges (example Suberites domuncula). Micron 37: 107-120 - pdf
Parada, V., G.J. Herndl & M.G. Weinbauer, 2006. Viral burst size of heterotrophic prokaryotes in aquatic systems. J. Mar. Biol. Ass. UK 86: 613-621 - pdf
Poll, W.H. van de, Alderkamp, A.-C., Janknegt, P.J., Roggeveld, J., Buma, A.G.J., 2006. Photoacclimation modulates excessive photosynthetically active and ultraviolet radiation effects in a temperate and an Antarctic marine diatom. Limnology and Oceanography 51: 1239-1248 - pdf
Reinthaler, T., Bakker, K., Manuels, R., Ooijen, J. van, Herndl, G.J., 2006. Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis. Limnol. Oceanogr.: Methods 4: 358-366 - pdf
Reinthaler, T., Aken, H. van, Veth, C., Aristegui, J., Robinson, C., Williams, P.J.l.B., Lebaron, P., Herndl, G.J., 2006. Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic Ocean. Limnology and Oceanography 51: 1262-1273 - pdf
Rijkenberg M.J.A., L.J.A. Gerringa, I. Velzeboer, K.R. Timmermans, A.G.J. Buma and H.J.W. de Baar. 2006. Iron-binding ligands in Dutch estuaries are not affected by UV induced photochemical degradation. Marine Chemistry 100: 11-23 - pdf
Rozema, J., P. Boelen, M. Doorenbosch, S. Bohncke, P. Blokker, C. Boekel, R. A. Broekman and M. Konert, 2006. A Vegetation, Climate and Environment Reconstruction Based on Palynological Analyses of High Arctic Tundra Peat Cores (5000–6000 years BP) from Svalbard . Plant Ecology 182(1-2): 155-173 - pdf
Rozema, J., Peter Boelen, Bjørn Solheim, Matthias Zielke, Alwin Buskens, Marieke Doorenbosch, Ruben Fijn, Jelger Herder, Terry Callaghan, Lars Olof Björn, Dylan Gwynn Jones, Rob Broekman, Peter Blokker and Willem van de Poll, 2006. Stratospheric Ozone Depletion: High Arctic Tundra Plant Growth on Svalbard is not Affected by Enhanced UV-B after 7 years of UV-B Supplementation in the Field. Plant Ecology 182(1-2): 121-135 - pdf
Sintes, E. & G.J. Herndl, 2006. Quantifying substrate uptake of individual cells of marine bacterioplankton by catalyzed reporter deposition fluorescence in situ hybridization combined with microautoradiography. Appl. Environ. Microbiol. 72: 7022-7028
Sogin, M.L., H.G. Morrison, J.A. Huber, D.M. Welch, S.M. Huse, J.M. Arrieta & G.J. Herndl, 2006. Microbial diversity in the deep sea and the under-explored “rare biosphere”. Proc. Natl. Acad. Sci. USA, 103: 12115-12120 - pdf
Stamhuis, E.J., 2006. Basics and principles of particle image velocimetry (PIV) for mapping biogenic and biologically relevant flows. Aquatic Ecology 40: 463-479 - pdf
Steinke, M., Stefels, J., Stamhuis, E., 2006. Dimethyl sulfide triggers search behavior in copepods. Limnology and Oceanography 51: 1925-1930 - pdf
Teira, E., H.M. v. Aken, C. Veth & G.J. Herndl, 2006. Archaeal uptake of enantiomeric amino acids in the meso- and bathypelagic waters of the North Atlantic . Limnol. Oceanogr. 51: 60-69 - pdf
Teira, E., P. Lebaron, H.M. v. Aken & G.J. Herndl, 2006. Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic . Limnol. Oceanogr. 51: 2131-2144 - pdf
Wuchter, C., B. Abbas, M.J.L. Coolen, L. Herfort, J. van Bleijswijk, P. Timmers, M. Strous, E. Teira, G.J. Herndl, J.J. Middelburg, S. Schouten & J.S. Sinninghe Damsté, 2006. Archaeal nitrification in the ocean. Proc. Natl. Acad. Sci.USA , 103: 12317-12322 - pdf
Zekeria, Z.A., Weertman, S., Samuel, B., Kale-ab, T., Videler, J.J., 2006. Growth of Chaetodon larvatus (Chaetotontidae: Pisces) in the southern Red Sea . Marine Biology 148: 1113-1122 - pdf
2005
Doctorate granted by the institution, prepared at another institution
Arrieta López de Uralde, J.M., 2005. Diversity and activity in marine prokaryotes. Promotor: prof.dr. G.J. Herndl, University of Groningen
Bozec, Y., 2005. Process studies of the biological pump of carbon dioxide in the North Sea and Southern Ocean. Promotores: prof.dr.ir. H.J.W. de Baar and prof.dr. H. Thomas, University of Groningen
Rijkenberg, M.J.A., 2005. Photochemistry and organic complexation of iron: Interactions in the Southern Ocean. Promotor : prof.dr.ir. H.J.W. de Baar, University of Groningen
Publications in journals
Baar, H.J.W. de, Boyd, P.W., Coale, Kenneth H., Landry, Michael R., Atsuhsi Tsuda, Assmy, Philip, Bakker, D.C.E., Bozec, Y., Barber, R.T., Brzezinski, M.A., Buesseler, K.O., Boyé, M., Croot, P. L., Gervais, F., Gorbunov, M.Y., Harrison, P. J., Hiscock, W.T., Laan, P., Lancelot, C., Law, C., Levasseur, M., Marchetti, A., Millero, F. J., Nishioka, J., Nojiri, Y., Oijen, T. van, Riebesell, U., Rijkenberg, M.J.A., Saito, H., Takeda, S., Timmermans, K.R., Veldhuis, M. J.W., Waite, A., Wong, C.S., 2005. Synthesis of Iron Fertilization Experiments: From the Iron Age in the Age of Enlightenment. In: Orr, J. C., S. Pantoja, and H.-O. Pörtner (eds.) The Oceans in a High-CO2 World. Special Issue of Journal of Geophysical Research C (Oceans) 110: 1-24.
Bakker D.C.E, Bozec, Y., Nightingale, P.D., Goldson, L., Messias, M.-J., Baar, H.J.W. de, Liddicoat, M., Skjelvan, I. , Strass, V., Watson, A.J., 2005. Iron and mixing affect biological carbon uptake in SOIREE and EisenEx, two Southern Ocean iron fertilisation experiments. Deep Sea Research Part I 52: 1001-19
Besemer, K., Moeseneder, M.M., Arrieta, J.M., Herndl, G.J., Peduzzi, P., 2005. Complexity of bacterial communities in a river-floodplain system (Danube , Austria ). Applied Environmental Microbiology 71: 609-620
Boer, M.K. de, Koolmees, E.M. , Vrieling, E.G., Breeman, A.M., Rijssel, M. van, 2005. Temperature responses of three Fibrocapsa japonica strains (Rhaphidophyceae) from different climate regions. Journal of Plankton Research 27: 47-60
Boyé, M., Nishioka, J., Croot, P.L., Laan, P., Timmermans, K.R., Baar, H.J.W. de, 2005. Major deviations of iron organic complexation during 22 days of a mescoscale iron enrichment in the open Southern Ocean. Marine Chemistry 96: 257-271 pdf
Bozec Y., Bakker, D.C.E., Hartman, Thomas, C. H., Bellerby, R., Riebesell, U., Baar, H.J.W. de, Watson, A.J., 2005. The CO2 system in a Redfield context during an iron enrichment experiment in the Southern Ocean. Marine Chemistry 95:89-105 pdf
Bozec, Y., Thomas, H., Elkalay, K., Baar, H.J.W. de, 2005.The continental shelf pump for CO2 in the North Sea - Evidence from summer observation. Marine Chemistry 93: 131-147 pdf
Croot, P.L., Laan, P., Nishioka, J., Strass, V., Cisewski, B., Boye, M., Timmermans, K.R., Bellerby, R.G., Goldson, L., Nightingale, P., Baar, H.J.W. de, 2005. Spatial and temporal distribution of Fe(II) and H2O2 during EisenEx, an open ocean mescoscale iron enrichment. Marine chemistry 95: 65-88 pdf
Dachs, J., M.L. Calleja, C.M. Duarte, S. de Vento, B. Turpin, A. Polidori, G.J. Herndl & S. Agusti, 2005. High atmosphere-ocean exchange of organic carbon in the NE subtropical Atlantic . Geophysical Research Letters: 32, L21807
Ellwood, M.J., Berg, C.M.G. van den, Boye, M., Veldhuis, M., Jong, J.T.M. de, Baar, H.J.W. de, Croot, P.L., Kattner, G., 2005. Organic complexation of cobalt across the Antarctic Polar Front. Marine and Freshwater Research 56: 1069-1075
Farnleitner, A.H., Wilhartitz, I., Ryzinska, G., Kirschner, A.K.T., Stadler, H., Burtscher, M.M.R., Szewzyk, Hornek, U., Herndl, G.J., Mach, R.L., 2005. Bacterial dynamics in spring water of alpine karst aquifers indicates the presence of stable autochthonous microbial endokarst communities. Environmental Microbiology 7: 1248-1259 pdf
Hazelaar, S., Strate, H.J. van der, Gieskes, W.W.C., Vrieling, E.G., 2005. Monitoring rapid valve formation in the pennate diatom Navicula salinarum (Bacillariophyceae). Journal of Phycology 41: 354-358 pdf
Herndl, G.J., Reinthaler, T., Teira, E., Aken, H.M. van, Veth, C., Pernthaler, A., Pernthaler, J., 2005. Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean . Applied and Environmental Microbiology 71: 2303-2309 pdf
Hoving, H.J.T., Venter, J.D., Worst, D.E., Lipinski, M.R., 2005. Adaptation of an immunodot assay for multiple prey identification of squid paralarvae in field trials. Journal of the Marine Biological Association of the United Kingdom 85: 1499-1501
Kramer, G.D., Pausz, C., Herndl, G.J., 2005. Elemental composition of dissolved organic matter and bacterioplankton production in the Faroe-Shetland Channal ( North Atlantic ). Deep-Sea Research I, 52: 85-97
Leeuwe, M.A. van, Sikkelerus, B. van, Gieskes, W.W.C., Stefels, J., 2005. Taxon-specific differences in photoacclimation to fluctuating irradiance in an Antarctic diatom and a green flagellate. Marine Ecology Progress Series 288: 9-19 full text
Moeseneder, M.M., Arrieta, J.M., Herndl, G.J., 2005. A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community. FEMS Microbiology Ecology 51: 341-352 pdf
Nauwelaerts, S., Stamhuis, E.J., Aerts, P., 2005. Propulsive force calculations in swimming frogs I: A momentum-impulse approach. Journal of Experimental Biology 208: 1435-1443 pdf
Nauwelaerts, S., Stamhuis, E.J., Aerts, P., 2005. Swimming and jumping in a semi-aquatic frog. Animal Biology 55: 3-15 pdf
Nishioka, J., Takeda, S., Baar, H.J.W. de, Croot, P.L., Boye, M., Laan, P., Timmermans, K.R., 2005. Changes in the concentration of iron in different size fractions during an iron enrichment experience in the open Southern Ocean. Marine Chemistry 95: 51-64
Obernosterer, I. , Catala, P., Reinthaler, T., Herndl, G.J., Lebaron, P., 2005. Enhanced heterotrophic activity in the surface microlayer of the Mediterranean Sea . Aquatic Microbial Ecology 39: 293-302 pdf
Oijen, T. van, Veldhuis, M.J.W., Gorbunov, M.Y., Nishioka, J., Leeuwe, M.A. van, Baar, H.J.W. de, 2005. Enchanced carbohydrate production by Southern Ocean phytoplankton in response to in situ iron fertilization. Marine Chemistry 93: 33-52
Pirker, H., Pausz, C., Stoderegger, K.E., Herndl, G.J., 2005. Simultaneous measurement of metabolic activity and membrane integrity in marine bacterioplankton determined by confocal laser-scanning microscopy. Aquatic Microbial Ecology 39: 225-233 pdf
Poll, W.H. van de, M.A. van Leeuwe, J. Roggeveld, A.G.J.Buma. 2005 Nutrient limitation and high irradiance acclimation reduce PAR and UV induced viability loss in the Antarctic diatom Chaetoceros brevis, J. Phycol. 41: 840 - 850
Reinthaler, T., Herndl, G.J., 2005. Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the southern North Sea. Aquatic Microbial Ecology 39: 7-16 pdf
Reinthaler, T., Winter, C., Herndl, G.J., 2005. Relationship between bacterioplankton richness, respiration, and production in the southern North Sea. Applied and Environmental Microbiology 71: 2260-2266
Rijkenberg, M.J.A., Fischer, A.C., Kroon, J.J., Gerringa, L.J.A., Timmermans, K.R., Verbeek, T., Baar, H.J.W. de, 2005. The influence of UV irradiation on the photoreduction of iron in the Southern Ocean. Marine Chemistry 93: 119-129
Schoemann, V., Becquevort, S., Stefels, J., Rousseau, V., Lancelot, C., 2005. Phaeocystis blooms in the global ocean and their controlling mechanisms: a review. Journal of Sea Research 53: 43-66 pdf
Stamhuis, E.J., Nauwelaerts, S., 2005. Propulsive force calculations in swimming frogs II: Application of a vortex ring model to DPIV data. Journal of Experimental Biology 208: 1445-1451
Stoderegger, K.E., Herndl, G.J., 2005. Dynamics in bacterial surface properties of a natural bacterial community in the coastal North Sea during a spring phytoplankton bloom. FEMS Microbiology Ecology 53: 285-294 pdf
Thomas H., Bozec, Y., Baar, H.J.W. de, Elkalay, K., Frankignoulle, M., Schiettecatte, L.-S., Borges, A.V., 2005. The Carbon budget of the North Sea . Biogeosciences 2: 82-96 pdf
Timmermans, K.R., Wagt, B. van der, Veldhuis, M.J.W., Maatman, A., Baar, H.J.W. de, 2005. Physiological responses of three species of marine picophytoplankton to ammonium, phosphate, iron and light limitation. Journal of Sea Research 53: 109-120
Veldhuis, M., Baar, H.J.W. de, 2005. Iron resources and oceanic nutrients: advancement of global environment simulations. Journal of Sea Research 53: 1-6
Videler, J.J., 2005. How Archaeopteryx could run over water. Archaeopteryx 23: 23-32
Vrieling, E.G., Sun, Q., Beelen, T.P.M., Hazelaar, S., Gieskes, Santen, R.A. van, Sommerdijk, N.A.J.M., 2005. Controlled silica synthesis inspired by diatom silicon biomineralization. Journal of Nanoscience and Nanotechnology 5: 68-78
Vroom, P., L.J. Walters, K.S. Beach , J.A. Coyer, J.E. Smith. M.J. Abgralle, D.Byron,K. DeAngelis, B. Konar, J. Liss, R. Okano, C.A. Roberts, L. Wick,M. Wo, S. Miller, and C.M. Smith. 2005. Hurricane induced propagation and rapid regrowth of the weedy brown algae Dictyota in the Florida Keys . Florida Scientist 68: 161-174
Winter, C., Smit, A ., Herndl, G.J., Weinbauer, M.G., 2005. Linking prokaryotic richness with viral abundance and prokaryotic activity. Limnology and Oceanography 50: 968-977 pdf
Winter, C., Smit, A ., Szöke-Dénes, T., Herndl,G.J., Weinbauer, M.G., 2005. Modeling viral impact on bacterioplankton in the North Sea using artificial neural networks. Environmental Microbiology 7: 881-893
Zekeria, Z.A., Afeworki, Y., Videler, J.J., 2005. The distribution patterns of Red Sea chaetodontid assemblages. Aquatic Conservation 15: 571-576
Chapter in book
Boer, M K de, Rijssel, M van, Vrieling, E G, 2004 (appeared 2005). Morphology of Fibrocapsa japonica cysts formed under laboratory conditions, In: Steidinger, K.A. , Landsberg, J.H. , Tomas, C.R. , Vargo, G.A. (red.), Harmful algae 2002, Florida Marine Research Institute [etc.] , Florida , USA , 2004, pp. 455-457
Fu, M. , Rijssel, M van, Liebezeit, G., 2004 (appeared 2005). Hemolytic compounds from Fibrocapsa japonica (Rhaphidophyceae), In: Steidinger, K.A. , Landsberg, J.H. , Tomas, C.R. , Vargo, G.A. (red.), Harmful algae 2002, Florida Marine Research Institute [etc.] , Florida , USA , pp. 207- 209
Shen, P. , Rijssel, M van, Wang, Y. , Songhui, L. , Jufang, C. , Qi, Y., 2004 (appeared 2005). Toxic Phaeocystis globosa strains from China grow at remarkably high temperatures, In: Steidinger, K.A. , Landsberg, J.H. , Tomas, C.R. , Vargo, G.A. (red.), Harmful algae 2002, Florida Marine Research Institute [etc.] , Florida , USA , pp. 396-398
2004
Doctorate granted by the institution, prepared within the institution
Ateweberhan, M., 2004. Seasonal dynamics of coral reef algae in the southern Red Sea, Functional group and population ecology. Promotores: Wolff, W.J., Videler, J.J., Bruggemann, J.H., Rijksuniversiteit Groningen, pp. 187
Gondwe, M., 2004. Quantifying the role of marine phytoplankton in the present day climate system. Promotor: Baar, H.J.W. de, Rijksuniversiteit Groningen, pp. 135
Hoarau, G.G., 2004. Population genetics of plaice (Pleuronectes platessa L.) in Northern Europe. Promotores: Olsen, J.l., Rijnsdorp, A.D., Stam, W.T., Rijksuniversiteit Groningen, pp. 136
Oijen, T. van, 2004. Iron and light limitation of carbohydrate production by phytoplankton in the Southern Ocean. Promotor: Baar, H.J.W. de, Rijksuniversiteit Groningen, pp. 172
Doctorate granted by the institution, prepared at another institution
Villafane, V.E., 2004. Ultraviolet radiation and primary productivity in temperate aquatic environments of Patagonia (Argentina). Promotor: Baar, H.J.W. de; co-promotor: Buma, A.G.J., Rijksuniversiteit Groningen, pp. 133
Winter, C., 2004. Ecological role of planktonic bacteriophages in the North Sea and the tropical Atlantic Ocean. Promotor: Herndl, G.J., Rijksuniversiteit Groningen, pp. 71
Publications in journals
Agogue, H., E. Casamayor, F. Joux, I. Obernosterer, C. Dupuy, F. Lantoine, P. Catala, M.G. Weinbauer, T. Reinthaler, G.J. Herndl, P. Lebaron, 2004. Comparison of samplers for the biological characterization of the sea surface microlayer. Limnology and Oceanography: Methods, 2, pp. 213-225 pdf
Arrieta, J.M., Weinbauer, M.G., Lute, C., Herndl, G.J., 2004. Response of bacterioplankton to iron fertilization in Southern Ocean. Limnology and oceanography, 49, pp. 799-808 pdf
Belviso, S., Moulin, C., Bopp, L., Stefels, J., 2004. Assessment of a global climatology of oceanic dimethylsulfide (DMS) concentrations based on SeaWiFS imagery (1998-2001). Canadian Journal of Fisheries and Aquatic Sciences, 61, pp. 804-816
Boer, M.K.de, Tyl, M.R., Vrieling, E.G., Rijssel, M. van, 2004. Effects of salinity and nutrient conditions on growth and haemolytic activity of Fibrocapsa japonica (Raphidophyceae). Aquatic Microbial Ecology, 37, pp. 171-181 pdf
Fu, M. , Koulman, A. , Rijssel, M van, Lutzen, A. , Boer, M K de, Tyl, M.R. , Liebezeit, G., 2004. Chemical characterisation of three haemolytic compounds from the microalgal species Fibrocapsa japonica (Raphidophyceae). Toxicon, 43, pp. 355-363 pdf
Geertjes, G.J., Postema, J., Kamping, A., van Delden W., Videler, J.J., van de Zande, L., 2004. Allozymes and RAPDs detect little genetic population substructering in the Caribbean stoplight parrotfish Sparisoma viride. Marine Ecology Progress Series, 279, pp. 225-235 pdf
Gerringa, L.J. A., Rijkenberg, M.J.A., Timmermans, R., Buma, A.G.J., 2004. The influence of solar ultraviolet radiation on the photochemical production of H2O2 in the equatorial Atlantic Ocean. Journal of Sea Research, 51, pp. 3-10 pdf
Himbergen-Gondwe, P.M. van, Krol, M., Klaassen, W., Gieskes, W.W.C., Baar, H.J.W. de, 2004. Comparison of modeled versus measured MSA:nns SO4= ratios: A global analysis. Global Biogeochemical Cycles, 18, pp. 2006-2023
Kramer, G.D., G.J. Herndl, 2004. Photo- and bioreactivity of chromophoric dissolved organic matter produced by marine bacterioplankton. Aquatic Microbial Ecology, 36, pp. 239-246 pdf
Kramer, J., Laan, P., Sathou, G., Timmermans, K.R., Baar, H.J.W. de, 2004. Distribution of dissolved aluminium in the high atmospheric input region of the subtropical waters of the North Atlantic Ocean. Marine Chemistry, 88, pp. 85-101 pdf
Oijen, T. van, Leeuwe, M.A. van, Gieskes, W.W.C., Baar, H.J.W. de, 2004. Effects of iron limitations on photosynthesis and carbohydrate metabolism in the Antarctic diatom Chaetoceros brevis (Bacillariophyceae). European Journal of Phycology, 39, 2004 pp. 161-171
Oijen, T. van, Leeuwe, M.A. van, Granum, E., Weissing, F.J., Bellerby, R.G.J., Gieskes, W,W.C., Baar, H.J. W. de, 2004. Light rather than iron controls photosynthate production and allocation in Southern Ocean phytoplankton populations during austral autumn. Journal of Plankton Research, 26, pp. 885-900 pdf
Poll, W.H. van de, A.G.J.Buma, A.M. Breeman. 2004 UVB induced DNA damage and its repair in marine macroalgae from Kongsfjorden ( Svalbard ). Ber. Zur Polar- und Meeresforsch. 492: 167-175
Raaphorst, W. van, Jonge, V.N. de, 2004. Reconstruction of the total N and P inputs from the IJsselmeer into the western Wadden Sea between 1935 - 1998. Journal of Sea Research, 51, pp. 109-131
Rijkenberg, M.J.A., Gerringa, L.J.A., Neale, P.J., Timmermans, K.R., Buma, A.G.J., Baar, H.J.W. de, 2004. UVA variability overrules UVB ozone depletion effects on the photoreduction of iron in the Southern Ocean. Geophysical Research Letters 31: L24310
Stelfox-Widdicombe, C.E., Archer, S.D., Burkill, P.H., Stefels, J., 2004. Microzooplankton grazing in Phaeocystis and diatom-dominated waters in the southern North Sea in spring. Journal of Sea Research, 51, pp. 37-51
Stoderegger, K.E. , Herndl, G.J., 2004. Dynamics in bacterial cell surface properties assessed by fluorescent stains and confocal laser scanning microscopy. Aquatic Microbial Ecology, 36, pp. 29-40
Sun, Q., Vrieling, E.G., Santen, R.A. van, Sommerdijk, N.A.J.M., 2004. Bioinspired synthesis of mesoporous silicas. Current Opinion in Solid State & Materials Science, 8, pp. 111-120
Teira, E. , Reinthaler, T. , Pernthaler, A. , Pernthaler, J. , Herndl, G.J., 2004. Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean. Applied and Environmental Microbiology, 70, pp. 4411-4414 pdf
Thomas, H., Bozec, Y., Elkalay, K., Baar, H.J.W. de, 2004. Enhanced open storage of CO2 from shelf sea pumping. Science, 304, pp. 1005 - 1008 pdf
Videler, J.J., Stamhuis, E.J., Povel, G.D.E., 2004. Leading-Edge Vortex lifts swifts. Science, 306, pp. 1960-1962 full text
Villafañe, V. E., A. G. J. Buma, P. Boelen & E. W. Helbling. 2004 Solar UVR-induced DNA damage and inhibition of photosynthesis in phytoplankton from Andean lakes of Argentina . Archiv fur Hydrobiologie.
Vrieling, E.G., Beelen, T.P.M., Sun, Q., Hazelaar, S., Santen, R.A. van, Gieskes, W.W.C., 2004. Ultrasmall, small, and wide-angle X-ray scattering analysis of diatom biosilica: interspecific differences in fractal properties. Journal of Materials Chemistry, 14, pp. 1970-1975 pdf
Winter, C., Smit, A., Herndl, G.J., Weinbauer, M.G., 2004. Impact of virioplankton on archaeal and bacterial community richness as assessed in seawater batch cultures. Applied Environmental Microbiology, 70, pp. 804-813
Zemmelink, H.J., Gieskes, W.W.C., Klaassen, W., Beukema, W.J., Groot, H.W. de, Baar, H.J.W. de, Hintsa, E.J., Mcgillis, W.R., Dacelv, J.W.H., 2004. Relaxed eddy accumulation measurements of the sea-to-air transfer of dimethylsulfide over the northeastern Pacific. Journal of geophysical research, C, Oceans, 109,1/ CO1025, pp. 1-10
Zemmelink, H J , Dacey, J W , Hintsa, E.J. , Mcgillis, W.R. , Gieskes, W W C , Klaassen, W , Groot, H.W. de, Baar, H J W de, 2004. Fluxes and gas transfer rates of the biogenic trace gas DMS derived from atmospheric gradients. Journal of geophysical research, C, Oceans, 109, 8/ (C08S10), pp. 1-8
Professional publications
Videler,J.J., 2004. A.A. Biewener, 2003, Animal locomotion. Crustaceana, 77 pp. 253-754
2003
Publications in journals
Bischof, K., Janknegt, P.J., Buma, A.G.J., Rijstenbil, J.W., Peralta, G., Breeman, A.M., 2003. Oxidative stress and enzymatic scavenging of superoxide radicals induced by solar UV-B radiation in Ulva canopies from southern Spain . Scientia Marina 67: 353-359
Bowie , A.R., Achterberg, E., Blain, S., Boye, M., Croot, P.L., Baar, H.J.W. de, Laan, P., Sarthou, G., Worsfold, P.J., 2003. Shipboard analytical intercomparison of dissolved iron in surface waters along a north-south transect of the Atlantic Ocean . Marine Chemistry 84: 19-34
Boyé, M., Aldrich, A.P., Berg, C.M.G. van den, Jong, J.T.M. de, Veldhuis, M., Baar, H.J.W. de, 2003. Horizontal gradients of the chemical speciation of iron in the surface water of the norteast Atlantic Ocean . Marine chemistry 80: 129-143
Buitenhuis, E., Timmermans, K.R., Baar, H.J.W. de, 2003. Zinc-bicarbonate colimitation of Emiliania hyxleyi. Limnology and oceanography 48: 1575-1582
Duren , L.A. van, Videler, J.J., 2003. Escape from viscosity: the kinematics and hydrodynamics of copepod foraging and escape swimming. Journal of Experimental Biology 206: 269-279
Duren , L.A. van, Stamhuis, E.J., Videler, J.J., 2003. Copepod feeding currents: flow patterns, filtration rates and energetics. Journal of Experimental Biology 206: 255-267
Edelaar, P., Drent, J., Goeij, P. de, 2003. A double test of the parasite manipulation hypothesis in a burrowing Hazelaar, S., Strate, H.J. van der, Gieskes, W.W.C., Vrieling, E.G., 2003. Possible role of ubiquitin in silica biomineralization in diatoms: identification of a homologue with high silica affinity. Biomolecular Engineering 20: 163-170
Hein, T., Baranyi, C., Herndl, G.J., 2003. Allochthonous and autochthonous particulate organic matter in floodplains of the River Danube: the importance of hydrological connectivity. Freshwater Biology 48: 220-232
Himbergen-Gondwe, P.M. van, Krol, M., Gieskes, W.W.C., Klaassen, W., Baar, H.J.W. de, 2003. The contribution of ocean-leaving DMS to the global atmospheric burdens of DMS, MSA, SO2, and NSS SO4=. Global Biogeochemical Cycles 17/2: 1-18
Hoppema, M., Baar, H.J.W. de, Fahrbach, E., Hellmer, H.H., Klei, B., 2003. Substantial advective iron loss diminishes phytoplankton production in the Antarctic Zone. Global Biogeochemical Cycles 17: 1-9
Laës, A., Blain, S., Laan, P., Achterberg, E.P., Sarthou, G., Baar, H.J.W. de., 2003. Deep dissolved iron profiles in the eastern North Atlantic in relation to water masses. Geophysical research letters 30 (17): pp. OCE 8 (1-4)
Muia, W.A., Bretschko, G., Herndl, G.J., 2003. A study of biofilm in a second order tropical stream, Njoro River , Kenya : first results. International Review of Hydrobiology 88: 372-384
Neat, F.C., Lengkeek, W., Westerbeek, P., Laarhoven, B., Videler, J.J., 2003. Behavioural and morphological differences between lake and river populations of Salaria fluviatilis. Journal of Fish Biology 63: 374-387
Oijen, T. van, Leeuwe, M.A. van, Gieskes, W.W.C., 2003. Variation of particulate carbohydrate pools over time and depth ina diatom-dominated plankton community at the Antarctic Polar Front. Polar Biology 26:195-201
Peperzak, L., Colijn, F., Koeman, R., Gieskes, W.W.C., Joordens, J., 2003. Phytoplankton sinking rates in the Rhine region of freshwater influence. Journal of Plankton Research 25: 365-384
Perez, M.T., Pausz, C., Herndl, G.J., 2003. Major shift in bacterioplankton utilization of enantiometric amino acids between surface waters and the ocean 's interior. Limnology and oceanography 48: 755-763
Poll, W.H. van de, Bischof, K., Buma, A.G.J., Breeman, A.M., 2003. Habitat related variation in UV tolerance of tropical marine red macrophytes is not temperature dependent. Physiologia Plantarum 118: 74-83
Sarthou, G., Baker, A.R., Blain, S.,Achterberg, E.P, Boye, M., Bowie, A.R., Croot, P., Laan, P., Baar, H.J.W. de, Jickells, T.D., Worsfold, P.J., 2003. Atmospheric iron deposition and sea-surface dissolved iron concentrations in the eastern Atlantic Ocean . Deep-Sea Research I 50: 1339-1352.
Slezak, D., Herndl, G.J., 2003. Role of UV-radiation on the cell content and concentration of dimethylsulfoniopropionate in Emiliania huxleyi (Strain L). Marine Ecology Progress Series 246: 61-71
Visser, F., Gerringa, L.J.A., Van der Gaast, S.J., Baar, H.J.W. de, Timmermans, K.R., 2003. The role of the reactivity and content of iron of aerosol dust on growth rates of two Antarctic diatom species. Journal of Phycology 39: 1085-1094
Vrieling, E.G., Hazelaar, S., Gieskes, W.W.C., Sun, Q., Beelen, T.P.M., Santen, R.A. van, 2003. Silicon biomineralisation: towards mimicking biogenic silica formation in diatoms. Progress in Molecular and Subcellular Biology 33: 301-334
Vries, A.C. de, Ritchie, J.C., Klaassen, W., Menenti, M., Kustas, W.P., Rango, A., Prueger, J.H., 2003. Effective aerodynamic roughness estimated from airborne laser altimeter measurements of surface features.International Journal of Remote Sensing 24: 1545-1558
Books
Huiskes, A.H.L., Gieskes, W.W.C., Rozema, J., Schorno, R.M.L., Vies, S.M. van der, Wolff, W.J. (red.), 2003. Antarctic biology in a global context. Proceedings of the VIIIth SCAR International Biology Symposium, 27 August - 1 September 2001 . Leiden : Backhuys Publishers
Wolff, W.J., Essink, K., Kellerman, A., Leeuwe, M.A. van (red.), 2003. Challenges to the Wadden Sea area : proceedings of the 10th international scientific Wadden Sea symposium, 31 October - 3 November 2000 . Groningen : Ministry of Agriculture, Nature Management and Fisheries, Department of Marine Biology, University of Groningen
Book chapters
Antia, A.N., Burkill, P., Balzer, W., Baar, H.J.W. de, Mantoura, F., Simo, R., Wallace, D., 2003. Couped biogeochemical cycling and controling factors. In: Wefer, G., Lamy, F., Mantoura, F. (red.), Marine science frontiers for Europe . Springer Verlag, Berlin - New York [etc.]: 147-162
Baar, H.J.W. de, La Roche, J., 2003. Trace metals in the oceans: evolution, biology and global change. In: Wefer, G., Lamy, F., Mantoura, F. (red.), Marine science frontiers for Europe . Springer Verlag, Berlin - New York [etc.]: 79-105
Buma, A.G.J., Boelen, P., Jeffrey, W.A., 2003. UVR-induced DNA damage in aquatic organisms. In: Helbling, E.W., Zagarese, H.E. (red.), UV effects in aquatic organisms and ecosystems. Elsevier, Amsterdam : 291-327
Herndl, G.J., Weinbauer, M.G., Marine microbial food web structure and function. In: Wefer, G., Lamy, F., Mantoura, F. (red.), 2003. Marine science frontiers for Europe, Springer Verlag, Berlin - New York [etc.]: 265-277
Lud,D., Anita G.J. Buma, Tanja C.W. Moerdijk, and Ad H.L. Huiskes 2003. DNA damage and photosynthesis in Prasiola crispa ssp. antarctica and Sanionia uncinata in response to manipulated UV-B radiation. In: Antarctic Biology in a global context (Eds. Huiskes, Gieskes, Rozema, Schorno, van der Vries and W. Wolff), 2003. Backhuys publishers
Publications in proceedings
Creuwels, J.C.S., Franeker, J.A. van, 2003. Do two closely related petrel species have a different breeding strategy in Antarctica ? In: Huiskes, A.H.L., Gieskes, W.W.C., Rozema, J., Schorno, R.M.L., Vies, S.M. van der, Wolff, W.J. (red.), Antarctic biology in a global context. Proceedings of the VIIIth SCAR International Biology Symposium, 27 August - 1 September 2001 . Backhuys Publishers, Leiden : 144-147
Jonge, V.N. de, Kolkman, M.J., Ruijgrok, E.C.M., Vries, M.B. de, 2003. The need for new paradigms in integrated socio-economic and ecological coastal policy making. Proceedings of 10th International Wadden Sea Symposium, 31 October - 3 November 2000 . Ministry of Agriculture, Nature Management and Fisheries, Department North, Department of Marine Biology, University of Groningen , Groningen : 247-270
Lud, D., Buma, A.G.J., Moerdijk, T.C.W., Huiskes, A.H.L., 2003. DNA damage and photosynthesis in Prasiola crispa ssp. antarctica and Sanionia uncinata in response to manipulated UV-B radiation. In: Huiskes, A.H.L., Gieskes, W.W.C., Rozema, J., Schorno, R.M.L., Vies, S.M. van der, Wolff, W.J. (red.), Antarctic biology in a global context. Proceedings of the VIIIth SCAR International Biology Symposium, 27 August - 1 September 2001 . Backhuys Publishers, Leiden : 69-73
2002
Journals
Bergh, J C J M van den, Nunes, P A L D, Dotinga, H M, Kooistra, W H C F, Vrieling, E G, Peperzak, L, Exotic harmful algae in marine ecosystems: an integrated biological-economic-legal analysis of impacts and policies, Marine Policy, 26, 2002, pp. 59-74
Boelen, P. A.F. Post, M.J.W. Veldhuis, A.G.J.Buma. Diel patterns of UVBR induced DNA damage in picoplankton size fractions from the Gulf of Aqaba, Red Sea. Microbial Ecology 44, 2002, 164-174.
George A.L. , H. Peat, A.G.J. Buma. Evaluation of DNA dosimetry to assess ozone-mediated variability of biologically harmful ultraviolet radiation in Antarctica Photochem. Photobiol. 76(3), 2002, 274 - 286
Hoarau, G.G. , Rijnsdorp, A D , Veer, H W van der, Stam, W T , Olsen, J L , Population structure of plaice (Pleuronectes platessa L.) in northern Europe: microsatellites revealed large-scale spatial and temporal homogeneity, In: Molecular Ecology, 11, 2002, pp. 1165-1176
van de Poll, W.H., A. Eggert, A.G.J.Buma, A.M. Breeman. Temperature dependence of UV radiation effects in Arctic and temperate isolates of three red macrophytes. Eur. J. Phycol. 37, 2002, 59-68
van de Poll, W.H., D. Hanelt, K. Hoyer, A.G.J.Buma, A.M. Breeman. 2002. Ultraviolet-B induced cyclobutane pyrimidine dimer formation and repair in Arctic marine macrophytes. Photochem. Photobiol. 76: 493-501
van Rijssel M., A.G.J. Buma. UV-B induced stress does not affect DMSP synthesis in the marine alga Emiliania huxleyi. In: Aquatic Microb. Ecol. 28, 2002, 167-174
2001
Book Chapters
Baar, H J W de, Jong, J.T.M. de, Distributions, sources and sinks of iron in seawater, In: Turner, D , Hunter, K A (red.), Biogeochemistry of Iron in Seawater, IUPAC Book Series on Analytical and Physical Chemistry of Environmental Systems, 7, Wiley, New York, 2001, pp. 123-253
Dacey, J W, Zemmelink, H J, Air-sea transfer - Dimethyl sulphide, COS, CS2, NH4, non-methane hydrocarbons, organo-halogens , In: Steele, J, Thorpe, S, Turekian, K (red), Encyclopedia of Ocean Sciences, Academic Press UK, London, 2001, pp. 131-137
Hunter, K A , Boyd, P W , Bruland, K W , Buffle, J , Buat-Menard, P , Baar, H J W de, Duce, R A , Sunda, W J , Jickells, T D , Moffett, J W , Rue, E L , Spokes, L J , Sulzberger, B , Turner, D R , Waite, T D , Watson, A J , Whitfield, M , Summary and recommendations, In: Turner, D , Hunter, K A (red.), Biogeochemistry of Iron in Seawater, IUPAC Book Series on Analytical and Physical Chemistry of Environmental Systems, 7, Wiley, New York, 2001, pp. 373-388
Jonge, V N de, Elliott, M, Eutrophication, In: Steele, J, Thorpe, S, Turekian, K (red), Encyclopedia of Ocean Sciences, Academic Press UK, London, 2001
Turner, D R , Hunter, K A , Baar, H J W de, Introduction, In: Turner, D , Hunter, K A (red.), Biogeochemistry of Iron in Seawater, IUPAC Book Series on Analytical and Physical Chemistry of Environmental Systems, 7, Wiley, New York, 2001, pp. 1-8
Videler, J J , Fish locomotion, In: Steele, J , Thorpe, S , Turekian, K (red.), Encyclopedia of Ocean Sciences, Academic Press UK, London, 2001, pp. 938-946
External Reports
Baar, H J W de, Stoll, M H C , Zemmelink, H J , Klaassen, W , Gieskes, W W C , Micrometeorology of air/sea fluxes of carbon dioxide and dimethylsuphide , Dutch National Research Programme on Global Air Pollution and Climate Change, Second phase, report no. 410 200 085, National Institute of Public Health and the Environment, Bilthoven, 2001
Kooijman, S.A.L.M. , Zonneveld, C , Riegman, R , Stolte, W , Slezak, D , Noordeloos, A A M , Gieskes, W W C , Rijssel, M van, Faber, F , Corstjens, P L A M , Westbroek, P , Kuile, B ter, A model approach to biological climate forcing: the example of Emiliania huxleyi, Dutch National Research Programme on Global Air Pollution and Climate Change, Second phase; report no.: 410 200 082, National Institute of Public Health and the Environment, Bilthoven, 2001
Read, S, Elliott, M, Jonge, V N de, Rogers, S, Parker, R, Strategic framework for assessing the risks of ecological impact from nutrient enrichment in the nearshore marine environment of the UK , Report Z 117-F-2001, Institute of Estuarine and Coastal Studies, University of Hull, Hull, 2001, 68 pp.
Journals
Arrieta, J M, Herndl, G J, Assessing the diversity of marine bacterial ß-glucosidases by capillary electrophoresis zymography, Applied Environmental Microbiology, 67, nr. 10, 2001, pp. 4896-4900
Boelen, P, Veldhuis, M J W, Buma, A G J, Accumulation and removal of UVBR-induced DNA damage in marine tropical plankton subjected to mixed and simulated non-mixed conditions , Aquatic Microbial Ecology, 24, 2001, pp. 265-274
Boye, M , Berg, C M G van den, Jong, J.T.M. de, Leach, P , Croot, P , Baar, H J W de, Organic complexation of iron in the Southern Ocean, In: Deep-Sea Research I, 48, 2001, pp. 1477-1497
Buitenhuis, E T , Wal, P van der, Baar, H J W de, Blooms of Emiliania huxleyi are sinks of atmospheric carbon dioxide; a field and mesocosm study derived simulation , In: Global Biogeochemical Cycles, 15, nr. 3, 2001, pp. 577-587
Buma, A G J, Helbling, E W, Boer, M K de, Villafane, V, Patterns of DNA damage and photoinhibition in temperate South-Atlantic picophytoplankton exposed to solar ultraviolet radiation, Journal of Photochemistry and Photobiology B: Biology, 62, 2001, pp. 9-18
Buma, A G J, Boer, M K de, Boelen, P, Depth distributions of DNA damage in antarctic marine phyto- and bacterioplankton exposed to summertime UV radiation, Journal of Phycology, 37, 2001, pp. 200-208
Geertjes, G J, Kamping, A, Delden, W van, Videler, J J, Genetic relationships among one non-endemic and two endemic Mediterranean Triplefin Blennies (Pisces, Blennioidei) , Marine Ecology, 22, nr. 3, 2001, pp. 255-265
Gerringa, L J A , Baar, H J W de, Nolting, R.F. , Paucot, H , The influence of salinity on the solubility of Zn and Cd sulphides in the Scheldt estuary, In: Journal of Sea Research, 46, 2001, pp. 201-211
Helbling, E W , Villafane, V , Buma, A G J , Andrade, M , Zaratti, F , DNA damage and photosynthetic inhibition induced by solar UVR in tropical phytoplankton (Lake Titicaca, Bolivia), In: European Journal of Phycology, 36, 2001, pp. 157-166
Helbling, E W, Buma, A G J, Boer, M K de, Villafane, V, In situ impact of solar ultraviolet radiation on photosynthesis and DNA in temperate marine phytoplankton , Marine Ecology Progress Series, 211, 2001, pp. 43-49
Himbergen-Gondwe, P M van, Klaassen, W, Gieskes, W W C, Baar, H J W de, Negligible direct radiative forcing of basin-scale climate by coccolithophore blooms, Geophysical research letters, 28, nr. 20, 2001, pp. 3911-3914
Hoppema, M , Roether, W , Bellerby, R G J , Baar, H J W de, Direct measurement reveal insignificant storage of anthropogenetic CO2 in the abyssal Weddell Sea, In: Geophysical research letters, 28, nr. 9, 2001, pp. 1747-1750
Klaassen, W , Evaporation from rain-wetted forest in relation to canopy wetness, canopy cover, and net radiation, In: Water Resources Research, 37, nr. 12, 2001, pp. 3227-3236
Lud, D , Buma, A G J , Poll, W H van de, Moerdijk, T C W , Huiskes, A H L , DNA-damage and photosynthetic performance in the Antarctic terrestrial alga P. crispa ssp. antarctica (Chlorophyta) under manipulated UV-B radiation, In: Journal of Phycology, 37, nr. 4, 2001, pp. 459-467
Moeseneder, M M, Winter, C, Herndl, G J, Horizontal and vertical complexity of attached and free-living bacteria of the eastern Mediterranean Sea, determined by 16S rDNA and 16S rRNA fingerprints, Limnology and oceanography, 46, nr. 1, 2001, pp. 95-107
Moeseneder, M M, Winter, C, Arrieta, J M, Herndl, G J, Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypesl , Journal of microbiological methods, 44, nr. 2, 2001, pp. 159-172
Mueller, U K, Smit, J, Stamhuis, E J, Videler, J J, How the body contributes to the wake in undulatory fish swimming: flow fields of a swimming eel (Anguilla anguilla), The Journal of Experimental Biology, 204, 2001, pp. 2751-2762
Obernosterer, I, Ruardij, P, Herndl, G J, Spatial and diurnal dynamics of dissolved organic matter (DOM) fluorescence and H2O2 and the photochemical oxygen demand of surface water DOM across the subtropical Atlantic Ocean, Limnology and oceanography, 46, nr. 3, 2001, pp. 632-643
Obernosterer, I, Sempéré, R, Herndl, G J, Ultraviolet radiation induces reversal of the bioavailability of DOM to marine bacterioplankton , Aquatic Microbial Ecology, 24, 2001, pp. 61-68
Poll, W H van de, Eggert, A, Buma, A G J, Breeman, A M, Effects of UV-B-induced damage and photoinhibition on growth of temperate marine red Macrophytes: habitat-related differences in UV-B tolerance, Journal of Phycology, 37, 2001, pp. 30-37
Slezak, D, Brugger, A, Herndl, G J, Impact of solar radiation on the biological removal of dimethylsulfoniopropionate and dimethylsulfide in marine surface waters , Aquatic Microbial Ecology, 25, 2001, pp. 87-97
Timmermans, K R , Snoek, J , Gerringa, L J A , Zondervan, I , Baar, H J W de, Not all eukaryotic algae can replace zinc with cobalt: Chaetoceros calcitrans (Bacillariophyceae) versus Emiliania huxleyi (Prymnesiophyceae), In: Limnology and oceanography, 46, nr. 3, 2001, pp. 699-703
Timmermans, K R , Gerringa, L J A , Baar, H J W de, Wagt, B van der, Veldhuis, M J W , Jong, J.T.M. de, Croot, P , Growth rates of large and small Southern Ocean diatoms in relation to availibility of iron in natural seawater, In: Limnology and oceanography, 46, nr. 2, 2001, pp. 260-266
Timmermans, K R , Davey, M S , Wagt, B van der, Snoek, J , Geider, R J , Veldhuis, M J W , Gerringa, L J A , Baar, H J W de, Co-limitation by iron and light of Chaetoceros brevis, C. dichaeta and C. calcitrans (Bacillariophyceae), In: Marine Ecology Progress Series, 217, 2001, pp. 287-298
Winter, C, Moeseneder, M M, Herndl, G J, Impact of UV radiation on bacterioplankton community composition, Applied Environmental Microbiology, 67, nr. 2, 2001, pp. 665-672
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