Publications

2010

Heinemann, M. and Sauer, U. (2010) Systems biology of microbial metabolism. Current Opinion in Microbiology, In press.
Kotte, O., Zaugg, J. B., and Heinemann M. (2010) Bacterial adaptation through distributed sensing of metabolic fluxes. Molecular Systems Biology, 6, 355.
Kümmel, A., Ewald, J. C., Fendt, S.M., Jol, S., Picotti, P., Aebersold, R., Sauer, U., Zamboni, N., and Heinemann M. (2010) Differential glucose repression in common yeast strains in response to a HXK2 deletion. FEMS Yeast Research, In press.

2009

de Graaf, A. A., Freidig, A.P., de Roos, B., Jamsheedi, N., Heinemann, M., Rullmann, J.A.C., Hall, K., Adiels, M., and van Ommen, B. (2009) Nutritional systems biology modeling: from molecular mechanisms to physiology (Review). PLoS Computational Biology, 5, e1000554.
Cook, G. M., Berney, M., Gebhard, S., Heinemann, M., Cox, R. A., Danilchanka, O., and Niederweis, M. (2009) Physiology of mycobacteria (Review). Advances in Microbial Physiology, 55, 81-184.
Kotte, O., and Heinemann, M. (2009) A divide–and–conquer approach to analyze underdetermined biochemical models. Bioinformatics, 25, 519-525.

2008

Herrgård, M.J., Swainston, N., Dobson, P., Dunn, W.B., Arga, K.Y., Arvas, M., Blüthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., le Novère, N., Li, P., Liebermeister, W., Mo, M.L., Oliveira, A.P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasić, I., Weichart, D., Brent, R., Broomhead, D.S., Westerhoff, H.V., Kırdar, B., Penttilä, M., Klipp, E., Palsson, B.Ø., Sauer, U., Oliver, S.G., Mendes, P., Nielsen, J., and Kell, D.B. (2008) A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nature Biotechnology, 26, 1155-1160.
Amantonico, A., Oh, J.Y., Sobek, J., Heinemann, M., and Zenobi, R. (2008) Mass spectrometric method for analyzing metabolites in yeast with single cell sensitivity. Angewandte Chemie Int. Ed., 120,5462-5465.
Zamboni, N., Kümmel, A., and Heinemann, M. (2008) anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data. BMC Bioinformatics, 9, 199.

2007

Hübscher, J., Jansen, A., Kotte, O., Schaefer, J., Majcherczyk, P.A., Harris, L.G., Bierbaum, G., Heinemann, M., and Berger-Bächi, B. (2007) Living with an imperfect cell wall: Compensation of femAB inactivation in Staphylococcus aureus . BMC Genomics, 8, 307.
Sauer, U., Heinemann, M., and Zamboni, N. (2007) Getting closer to the whole picture. Science, 316, 550-551.

2006

Kümmel, A., Panke, S., and Heinemann, M. (2006) Systematic assignment of thermodynamic constraints in metabolic network models. BMC Bioinformatics, 7, 512.
Heinemann, M., and Panke, S. (2006) Synthetic biology – putting engineering into biology. Bioinformatics, 22, 2790-2799.
Seggewiß, J., Becker, K., Kotte, O., Eisenacher, M., Khoschkhoi Yazdi, M.R., Fischer, A., McNamara, P., Al Naham, N., Proctor, R., Peters, G., Heinemann, M., and von Eiff, C. (2006) Reporter metabolite analysis of transcriptional profiles of a Staphylococcus aureus strain with normal phenotype and its isogenic hemB mutant displaying the small colony variant phenotype. J. Bacteriol., 188, 7765-7777.
Kümmel, A., Panke, S., and Heinemann, M. (2006) Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data. Mol. Syst. Biol., 2, 2006.0034.

2005

Last modified:

10 October 2012 11.36 a.m.