Publications

2025 - Publications

• Aaldijk AS, Struik D, Driessen S, Verzijl CRC, Verheij J, Nieuwdorp M, Eilers R, Wolters JC, Holleboom AG, Jonker JW. 2025. Beta-Klotho protein expression in healthy human tissues and liver biopsies from patients with MASLD or MASH. Gastro Hep Advances 4(10): 100745. https://doi.org/10.1016/j.gastha.2025.100745

• De Vos K, Mols R, Chatterjee S, Huang MC, Augustijns P, Wolters JC, Annaert P. 2025. In vitro-in silico models to elucidate mechanisms of bile acid disposition and cellular aerobics in human hepatocytes. The AAPS Journal 27(2): 51. https://doi.org/10.1208/s12248-024-01010-9

• Fang J, Wolters JC, Rafie K, Wang C, Bartel S, van den Berge M, Hylkema MN. 2025. Extracellular vesicles from bronchoalveolar lavage fluid provide insights into the inhaled corticosteroids treatment response in COPD. Respiratory Research 26(1): 254. https://doi.org/10.1186/s12931-025-03330-6

• Geng Y, Luo K, Stam J, Oosterhuis D, Gorter AR, van den Heuvel M, Crescitelli R, de Meijer VE, Wolters JC, Olinga P. 2025. Characterization of extracellular vesicles derived from human precision-cut liver slices in metabolic dysfunction-associated steatotic liver disease. Journal of Extracellular Biology 4(5): e70043. https://doi.org/10.1002/jex2.70043

• Gładysz MZ, Fernandes M, Li X, Koch M, Marchena F, Hofman A, de Graaf M, Wolters JC, Kamperman M, Nagelkerke A, Włodarczyk-Biegun MK. 2025. Multilayered trabecular meshwork for dynamic in vitro studies in glaucoma research. Acta Biomaterialia 202: 262-275. https://doi.org/10.1016/j.actbio.2025.06.035

• Grievink HW, Breedveld C, Öhd J, Schoonderwoerd M, Permentier HP, Foks AC, Bot I, Neubert E, Moerland M. 2025. In vitro and in vivo lipopolysaccharide-driven activation of human neutrophils in healthy volunteers as a tool for clinical drug development. Journal of Immunological Methods 544:113968. https://doi.org/10.1016/j.jim.2025.113968

• Horcas-Nieto JM, Rios-Ocampo WA, Langelaar-Makkinje M, de Boer R, Gerding A, Chornyi S, Martini IA, Wolters JC, Wanders RJA, Waterham HR, Van der Klei IJ, Bandsma RHJ, Jonker JW, Bakker BM. 2025. Docosahexaenoic acid prevents peroxisomal and mitochondrial protein loss in a murine hepatic organoid model of severe malnutrition. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1871(6): 167849. https://doi.org/10.1016/j.bbadis.2025.167849

• Karsten REH, Gier K, de Meijer VE, Huibers WHC, Permentier HP, Verpoorte E, Olinga P. 2025. Studying the intracellular bile acid concentration and toxicity in drug-induced cholestasis: comprehensive LC-MS/MS analysis with human liver slices. Toxicology in Vitro 104: 106011. https://doi.org/10.1016/j.tiv.2025.106011

• Katsavelis D, van der Hart MGC, Wolters JC, Permentier HP, Horvatovich P, Cremers TIFH. 2025. Impact of sample preparation strategies on the quantitative accuracy of low-abundance serum proteins in shotgun proteomics. Journal of Proteome Research 24(9): 4792-4803. https://doi.org/10.1021/acs.jproteome.5c00572

• van der Koog L, Woest ME, Gorter IC, Verschut V, Elferink RAB, Zuidhof AB, Nugraha DF, Koloko Ngassie ML, Bos SIT, Dhakad D, Wolters JC, Horvatovich PL, Prakash YS, Timens W, Yildirim ÖA, Brandsma CA, Frijlink HW, Nagelkerke A, Gosens R. 2025. Fibroblast-derived osteoglycin promotes epithelial cell repair. npj Regenerative Medicine 10(1): 16. https://doi.org/10.1038/s41536-025-00404-3

• van der Koog L, Wu X, Nugraha DF, Ravi A, Wolters JC, Verhamme FM, Horvatovich PL, Bracke KR, van der Does AM, Hiemstra PS, Johnson JR, Harmsen MC, Nagelkerke A, Gosens R. 2025. Pulmonary microvascular endothelial cells Support alveolar epithelial growth via bone morphogenetic protein 6 secretion. American Journal of Respiratory Cell and Molecular Biology 73(6): 920-937. https://doi.org/10.1165/rcmb.2024-0409OC

• Kovacs A, Henning RH, Permentier H, Wolters JC, Herwig A, Bouma HR. 2025. Mitochondrial proteomic adaptations to daily torpor in the Djungarian hamster (Phodopus sungorus). Journal of Comparative Physiology B. 195(4): 481-491. https://doi.org/10.1007/s00360-025-01625-0

• Li Y, Son KCV, Serna-Salas S, Wolters JC, Wassenaar NPM, Driessen S, Mak AL, Dijk AV, Houttu VAT, Witjes JJ, Zwirs D, Doukas M, Verheij J, Dullaart RPF, Blokzijl H, Holleboom AG, Moshage H. 2025. Plasma extracellular vesicles contain protein biomarkers for capturing stages of metabolic dysfunction-associated steatotic liver disease: a preliminary exploratory study. Biomolecules 15(11): 1596. https://doi.org/10.3390/biom15111596

• Lin Y, Wang B, Huang M, Wolters JC, Demaria M. 2025. Integrative omics reveal female-specific benefits of p16+ cell clearance in aging mice. Advanced Science e09444. https://doi.org/10.1002/advs.202509444

• Nielsen MI, Wolters JC, Bringas OGR, Jiang H, Di Stefano LH, Oghbaie M, Hozeifi S, Nitert MJ, van Pijkeren A, Smit M, Ter Morsche L, Mourtzinos A, Deshpande V, Taylor MS, Chait BT, LaCava J. 2025. Targeted detection of endogenous LINE-1 proteins and ORF2p interactions. Mobile DNA 16(1): 3. https://doi.org/10.1186/s13100-024-00339-4

• Sokoliova S, Sardaru IR, Franciszek FP, Hermans JH, Permentier HP, Horvatovich PL, Witte MD. 2025. Identification of methylglyoxal reactive proteins with photocaged glycating agents. ChemBioChem 26(21): e202500275. https://doi.org/10.1002/cbic.202500275

• Thorne AM, Geng Y, Lantinga VA, Smit M, Kuivenhoven JA, Porte RJ, Kuipers F, Olinga P, Wolters JC, de Meijer VE. 2025. Therapeutic hyperthermia promotes lipid export and HSP70/90 during machine perfusion of human livers. Physiological Reports 13: e70348. https://doi.org/10.14814/phy2.70348

• Wedman JJ, de Vries L, van Lingen B, van der Zwaag M, Gómez-Sánchez R, Hardenberg R, Huibers W, Permentier H, Strauss E, Chang M, Reggiori F, de Kroon AI, Sibon OCM, Schepers H. 2025. Opt1 imports CoA precursors as glutathione mixed disulfides. Journal of Biological Chemistry 301(9): 110503. https://doi.org/10.1016/j.jbc.2025.110503

• Zhang B, Loaiza N, Rimbert A, Oldoni F, Blauw LL, Rensen PCN, Martinez LO, Robert J, von Eckardstein A, Wolters JC, Huijkman N, Kloosterhuis N, Smit M, van de Sluis B, Kuivenhoven JA, Tharehalli U. 2025. Loss of GPR146 decreases plasma levels of HDL cholesterol via post-translational upregulation of SR-B1 protein levels. Cardiovascular Research in press. https://doi.org/10.1093/cvr/cvaf254

2025 - Acknowledged contributions

• Cong Y Verlhac P, Green BB, de Vries-Idema J, Moesgaard Strauss L, Río-Bergé C, Etzerodt A, Nejsum LN, Huckriede ALW, Reggiori F. 2025. Influenza A virus subverts the LC3-pericentrin dynein adaptor complex for host cytoplasm entry. Science Advances 11(24): eadu7602. https://doi.org/10.1126/sciadv.adu7602

• Wang C, Tervoort S, Kuipers OP, Broos J. 2025. Synthesis and Antimicrobial Specificities of Halogenated Tryptophan-Containing Nisin Variants. ACS Chemical Biology 20(10): 2503-2511. https://doi.org/10.1021/acschembio.5c00632

2024 - Publications

• Bartel S, Wolters JC, Noor H, Rafie K, Fang J, Kirchner B, Nolte-′t Hoen E, Pfaffl MW, Rutgers S, Timens W, van den Berge M, Hylkema MN. 2024. Altered extracellular vesicle-derived protein and microRNA signatures in bronchoalveolar lavage fluid from patients with chronic obstructive pulmonary disease. Cells 13(11): 945. https://doi.org/10.3390/cells13110945

• De Vos K, Mavrogiannis A, Wolters JC, Schlenner S, Wierda K, Cortés Calabuig Á, Chinnaraj R, Dermesrobian V, Armoudjian Y, Jacquemyn M, Corthout N, Daelemans D, Annaert P. 2024. Tankyrase1/2 inhibitor XAV-939 reverts EMT and suggests that PARylation partially regulates aerobic activities in human hepatocytes and HepG2 cells. Biochemical Pharmacology 227: 116445. https://doi.org/10.1016/j.bcp.2024.116445

• Guan Z, Song Y, de Vries M, Permentier P, Tepper P, van Merkerk R, Setroikromo R, Quax WJ. 2024. The promiscuity of squalene synthase-like enzyme: dehydrosqualene synthase, a natural squalene hyperproducer? Journal of Agricultural and Food Chemistry 2(6): 3017-3024. https://doi.org/10.1021/acs.jafc.3c05770

• Heida A, van Dijk T, Smit M, Koehorst M, Koster M, Kloosterhuis N, Havinga R, Bloks VW, Wolters JC, de Bruin A, Kuivenhoven JA, de Boer JF, Kuipers F, van de Sluis B. 2024. Changes in bile acid composition are correlated with reduced intestinal cholesterol uptake in intestine-specific WASH-deficient mice. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 1869(2):159445. https://doi.org/10.1016/j.bbalip.2023.159445

• Krishnamurthy KA, Rutten MGS, Hoogerland JA, van Dijk TH, Bos T, Koehorst M, de Vries MP, Kloosterhuis NJ, Havinga H, Schomakers BV, van Weeghel M, Wolters JC, Bakker BM, Oosterveer MH. 2024. Hepatic ChREBP orchestrates intrahepatic carbohydrate metabolism to limit hepatic glucose 6-phosphate and glycogen accumulation in a mouse model for acute Glycogen Storage Disease type Ib. Molecular Metabolism 79: 101838. https://10.1016/j.molmet.2023.101838

• Majerníková N, Marmolejo-Garza A, Salinas CS, Luu MDA, Zhang Y, Trombetta-Lima M, Tomin T, Birner-Gruenberger R, Lehtonen Š, Koistinaho J, Wolters JC, Ayton S, den Dunnen WFA, Dolga AM. 2024. The link between amyloid β and ferroptosis pathway in Alzheimer's disease progression. Cell Death & Disease 15(10): 782. https://doi.org/10.1038/s41419-024-07152-0

• Martínez-Aguilar M, Trillos-Almanza MC, Wolters JC, Buist-Homan M, TransplantLines Investigators, van Vilsteren F, Blokzijl H, Moshage H. 2024. Optimization of protocols for blood-derived extracellular vesicles for studies in liver diseases. Exploration of Digestive Diseases 3(2): 143-162. https://doi.org/10.37349/edd.2024.00044

• Moadab F, Sohrabi S, Wang X, Najjar R, Wolters JC, Jiang H, Miao W, Romero D, Zaller DM, Tran M, Bays A, Taylor MS, Kapeller R, LaCava J, Mustelin T. 2024. Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes. Mobile DNA 15(1):14. https://doi.org/10.1186/s13100-024-00324-x

• Otto TA, Bergsma T, Dekker M, Mouton SN, Gallardo P, Wolters JC, Steen A, Onck PR, Veenhoff LM. 2024. Nucleoporin Nsp1 surveils the phase state of FG-Nups. Cell Reports 43(10): 114793. https://doi.org/10.1016/j.celrep.2024.114793

• Pedersen MP, Wolters JC, de Boer R, Krikken AM, van der Klei IJ. 2024. The Hansenula polymorpha mitochondrial carrier family protein Mir1 is dually localized at peroxisomes and mitochondria. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1871(5): 119742. https://doi.org/10.1016/j.bbamcr.2024.119742

• Russo S, Kwiatkowski M, Wolters JC, Gerding A, Hermans J, Govorukhina N, Bischoff R, Melgert BN. 2024. Effects of lysine deacetylase inhibitor treatment on LPS responses of alveolar-like macrophages. Journal of Leukocyte Biology 115(3): 435-449. https://doi.org/10.1093/jleuko/qiad121

• Thorne AM, Hoekzema M, Porte RJ, Kuipers F, de Meijer VE, Wolters JC. 2024. Comparative analysis of digestion methods for bile proteomics: the key to unlocking biliary biomarker potential. Analytical Chemistry. 96(36): 14393-14404. https://pubs.acs.org/doi/10.1021/acs.analchem.4c01766

• Wang J, Zhao F, Brouwer LA, Buist-Homan M, Wolters JC, Moshage H, Harmsen MC. 2024. Collagen-rich liver-derived extracellular matrix hydrogels augment survival and function of primary rat liver sinusoidal endothelial cells and hepatocytes. International Journal of Biological Macromolecules 278: 134717. https://doi.org/10.1016/j.ijbiomac.2024.134717

2024 - Acknowledged contributions

• Fu Y, Pateri E, Kuipers OP. 2024. Discovery, biosynthesis, and characterization of rodencin, a two-component lanthipeptide, harboring D-amino acids introduced by the unusual dehydrogenase RodJA. Journal of Natural Products 87(10): 2344-2354. https://doi.org/10.1021/acs.jnatprod.4c00170

• Iacovelli R, He S, Sokolova N, Lokhorst I, Borg M, Fodran P, Haslinger K. 2024. Discovery and heterologous expression of functional 4-O-dimethylallyl-L-tyrosine synthases from lichen-forming fungi. Journal of Natural Products 87(9): 2243-2254. https://doi.org/10.1021/acs.jnatprod.4c00619

• Iacovelli R, Poon F, Haslinger K. 2024. Identification and reconstitution of the first two enzymatic steps for the biosynthesis of bioactive meroterpenoids from Hericium erinaceus (lion’s mane mushroom). Molecules 29(23), 5576. https://doi.org/10.3390/molecules29235576

• Osipyan A, Bulai RG, Wu Z, de Witte J, van der Velde JJH, Kader M, van der Wouden PE, Poelarends GJ, Dekker FJ. 2024. The synthesis of 1,2,3-triazoles as binders of D-dopachrome tautomerase (D-DT) for the development of dual-targeting inhibitors. European Journal of Medicinal Chemistry 276: 116665. https://doi.org/10.1016/j.ejmech.2024.116665

• Pinheiro-Machado E, Faas MM, de Haan BJ, Moers C, Smink AM. 2024. Culturing conditions dictate the composition and pathways enrichment of human and rat perirenal adipose-derived stromal cells' secretomes. Stem Cell Reviews and Reports 20(7): 1869-1888. https://doi.org/10.1007/s12015-024-10748-w

• Soto-Gamez A, van Es M, Hageman E, Serna-Salas SA, Moshage H, Demaria M, Pringle S, Coppes RP. 2024. Mesenchymal stem cell-derived HGF attenuates radiation-induced senescence in salivary glands via compensatory proliferation. Radiotherapy and Oncology 190: 109984. https://doi.org/10.1016/j.radonc.2023.109984

• Tabb DL, Kaniyar MH, Bringas OGR, Shin H, Di Stefano L, Taylor MS, Xie S, Yilmaz OH, LaCava J. 2024. Interrogating data-independent acquisition LC-MS/MS for affinity proteomics. Journal of Proteins and Proteomics 15(3): 281-298. https://doi.org/10.1007/s42485-024-00166-4

• Zhao C, Zhang J, Knol CWJ, Osipyan A, Majerníková N, Chen T, Xiao Z, Adriana J, Griffith AJ, Gamez AS, van der Wouden PE, Coppes RP, Dolga AM, Haisma HJ, Dekker FJ. 2024. Small molecule MIF modulation enhances ferroptosis by impairing DNA repair mechanisms. Advanced Science 11(32): e2403963. https://doi.org/10.1002/advs.202403963

2023 - Publications

• Bekker NJ, van Pijkeren A, Wolters JC, Sánchez Brotons A, Guryev V, Woldhuis RR, Bischoff R, Alkema W, Horvatovich P, Van Nijnatten JLL, van den Berge M, Timens W, Brandsma CA. 2023. A proteomics approach to identify COPD-related changes in lung fibroblasts. American Journal of Physiology - Lung Cellular and Molecular Physiology 324(4): L521-L535. https://doi.org/10.1152/ajplung.00105.2022

• Deprince A, Hennuyer N, Kooijman S, Pronk ACM, Baugé E, Lienard V, Verrijken A, Dirinck E, Vonghia L, Woitrain E, Kloosterhuis NJ, Marez E, Jacquemain P, Wolters JC, Lalloyer F, Eberlé D, Quemener S, Vallez E, Tailleux A, Kouach M, Goossens JF, Raverdy V, Derudas B, Kuivenhoven JA, Croyal M, van de Sluis B, Francque S, Pattou F, Rensen PCN, Staels B, Haas JT. 2023. Apolipoprotein F is reduced in humans with steatosis and controls plasma triglyceride-rich lipoprotein metabolism. Hepatology 77(4): 1287-1302. https://doi.org/10.1002/hep.32631

• Hermans J, Alipour Najmi A, Permentier H, Bischoff R. 2023. Online coupling of a catalytic continuous microflow reactor to mass spectrometry. Talanta 266: 124928. https://doi.org/10.1016/j.talanta.2023.124928

• Lin C, Mostafa A, Jans A, Wolters JC, Mohamed MR, Van der Vorst EPC, Trautwein C, Bartneck M. 2023. Targeting ligand independent tropism of siRNA-LNP by small molecules for directed therapy of liver or myeloid immune cells. Advanced Healthcare Materials 2202670. https://doi.org/10.1002/adhm.202202670

• Nijholt KT, Sánchez-Aguilera PI, Mahmoud B, Gerding A, Wolters JC, Wolters AHG, Giepmans BNG, Silljé HHW, de Boer RA, Bakker BM, Westenbrink BD. 2023. A Kinase Interacting Protein 1 regulates mitochondrial protein levels in energy metabolism and promotes mitochondrial turnover after exercise. Scientific Reports 13(1): 18822. https://doi.org/10.1038/s41598-023-45961-z

• Odendaal C, Jager EA, Martines AMF, Vieira-Lara MA, Huijkman NCA, Kiyuna LA, Gerding A, Wolters JC, Heiner-Fokkema R, van Eunen K, Derks TGJ, Bakker BM. 2023. Personalised modelling of clinical heterogeneity between medium-chain acyl-CoA dehydrogenase patients. BMC Biology 21(1): 184. https://doi.org/10.1186/s12915-023-01652-9

• Rutten MGS, Lei Y, Hoogerland JH, Bloks VW, Yang H, Bos T, Krishnamurthy KA, Bleeker A, Koster MH, Thomas RE, Wolters JC, van den Bos H, Mithieux G, Rajas F, Mardinoglu A, Spierings DCJ, de Bruin A, van de Sluis B, Oosterveer MH. 2023. Normalization of hepatic ChREBP activity does not protect against liver disease progression in a mouse model for Glycogen Storage Disease type Ia. Cancer & Metabolism 11: 5. https://doi.org/10.1186/s40170-023-00305-3

• Sabogal-Guáqueta AM, Marmolejo-Garza A, Trombetta-Lima M, Oun A, Hunneman J, Chen T, Koistinaho J, Lehtonen S, Kortholt A, Wolters JC, Bakker BM, Eggen BJL, Boddeke E, Dolga A. 2023. Species-specific metabolic reprogramming in human and mouse microglia during inflammatory pathway induction. Nature Communications 14(1): 6454. https://doi.org/10.1038/s41467-023-42096-7

• Taylor MS, Wu C, Fridy PC, Zhang SJ, Senussi Y, Wolters JC, Cajuso T, Cheng WC, Heaps JD, Miller BD, Mori K, Cohen L, Jiang H, Molloy KR, Chait BT, Goggins MG, Bhan I, Franses JW, Yang X, Taplin ME, Wang X, Christiani DC, Johnson BE, Meyerson M, Uppaluri R, Egloff AM, Denault EN, Spring LM, Wang TL, Shih IM, Fairman JE, Jung E, Arora KS, Yilmaz OH, Cohen S, Sharova T, Chi G, Norden BL, Song Y, Nieman LT, Pappas L, Parikh AR, Strickland MR, Corcoran RB, Mustelin T, Eng G, Yilmaz ÖH, Matulonis UA, Chan AT, Skates SJ, Rueda BR, Drapkin R, Klempner SJ, Deshpande V, Ting DT, Rout MP, LaCava J, Walt DR, Burns KH. 2023. Ultrasensitive detection of circulating LINE-1 ORF1p as a specific multicancer biomarker. Cancer Discovery 13(12): 2532-2547. https://doi.org/10.1158/2159-8290.CD-23-0313

• Thorne AM, Wolters JC, Lascaris B, Bodewes SB, Lantinga VA, van Leeuwen OB, de Jong IEM, Ustyantsev K, Berezikov E, Lisman T, Kuipers F, Porte RJ, de Meijer VE. 2023. Bile proteome reveals biliary regeneration during normothermic preservation of human donor livers. Nature Communications 14(1): 7880. https://doi.org/10.1038/s41467-023-43368-y

• Tian X, Permentier HP, Bischoff R. 2023. Chemical isotope labeling for quantitative proteomics. Mass Spectrometry Reviews 42: 546-576. https://doi.org/10.1002/mas.21709

• Verzijl CRC, van de Peppel IP, Eilers RE, Bloks VW, Wolters JC, Koehorst M, Kloosterhuis NJ, Havinga R, Jalving M, Struik D, Jonker JW. 2023. Pharmacological inhibition of MEK1/2 signaling disrupts bile acid metabolism through loss of Shp and enhanced Cyp7a1 expression. Biomedicine & Pharmacotherapy 159: 114270. https://doi.org/10.1016/j.biopha.2023.114270

• Vieira-Lara MA, Reijne AC, Koshian S, Ciapaite J, Abegaz F, Talarovicova A, van Dijk TH, Versloot CJ, Bandsma RHJ, Wolters JC, Groen AK, Reijngoud DJ, van Dijk G, Bakker BM. 2023. Age and diet modulate the insulin-sensitizing effects of exercise: a tracer-based oral glucose tolerance test. Diabetes db220746. https://doi.org/10.2337/db22-0746

• Vos DY, Wijers M, Smit M, Huijkman N, Kloosterhuis NJ, Wolters JC, Tissink JJ, Pronk ACM, Kooijman S, Rensen PCN, Kuivenhoven JA, van de Sluis B. 2023. Cargo-specific role for retriever subunit VPS26C in hepatocyte lipoprotein receptor recycling to control postprandial triglyceride-rich lipoproteins. Arteriosclerosis, Thrombosis, and Vascular Biology 43(1): e29-e45. https://doi.org/10.1161/ATVBAHA.122.318169

• Zhou W, Colpa DI, Permentier H, Offringa RA, Rohrbach L, Euverink GJW, Krooneman J. 2023. Insight into polyhydroxyalkanoate (PHA) production from xylose and extracellular PHA degradation by a thermophilic Schlegelella thermodepolymerans. Resources, Conservation and Recycling 194: 107006. https://doi.org/10.1016/j.resconrec.2023.107006

• van Zwol W, Rimbert A, Wolters JC, Smit M, Bloks VW, Kloosterhuis NJ, Huijkman N, Koster MH, Tharehalli U, de Neck SM, Bournez C, Fuh MM, Kuipers J, Rajan S, de Bruin A, Ginsberg HN, van Westen GJP, Hussain MM, Scheja L, Heeren J, Zimmerman P, van de Sluis B, Kuivenhoven JA. 2023. Loss of hepatic SMLR1 causes hepatosteatosis and protects against atherosclerosis due to decreased hepatic VLDL secretion. Hepatology 78(5): 1418-1432. https://doi.org/10.1002/hep.32709

2023 - Acknowledged contributions

• Aliyandi A, Reker-Smit C, Zuhorn IS, Salvati A. 2023. Cell surface biotinylation to identify the receptors involved in nanoparticle uptake into endothelial cells. Acta Biomaterialia 155: 507-520. https://doi.org/10.1016/j.actbio.2022.11.010

• Chen D, Osipyan A, Adriana J, Kader M, Gureev M, Knol CWJ, Sigmund M-C, Xiao Z, van der Wouden PE, Cool RH, Poelarends GJ, Dekker FJ. 2023. Allosteric inhibitors of macrophage migration inhibitory factor (MIF) interfere with apoptosis-inducing factor (AIF) co-localization to prevent parthanatos. Journal of Medicinal Chemistry 66(13): 8767-8781. https://doi.org/10.1021/acs.jmedchem.3c00397

• Fu Y, Zhou L, Kuipers O. 2023. Discovery, biosynthesis, and characterization of a lanthipeptide from Bacillus subtilis EH11 with a unique lanthionine ring pattern. Cell Reports Physical Science 4(8): 101524. https://doi.org/10.1016/j.xcrp.2023.101524

• Kirkpatrick J, Stemmer PM, Searle BC, Herring LE, Martin L, Midha MK, Phinney BS, Shan B, Palmblad M, Wang Y, Jagtap PD, Neely BA. 2023. 2019 Association of Biomolecular Resource Facilities multi-laboratory data-independent acquisition proteomics study. Journal of Biomolecular Techniques 34(2): 3fc1f5fe.9b78d780. https://doi.org/10.7171/3fc1f5fe.9b78d780

2022 - Publications

• Alipour Najmi A, Bischoff R, Permentier HP. 2022. N-Dealkylation of amines. Molecules 27(10): 3293. https://doi.org/10.3390/molecules27103293

• Alipour Najmi A, Jafariyeh-Yazdi E, Hadian M, Hermans J, Bischoff R, Yue J, Dömling A, Wittstock A, Permentier HP. 2022. Nanoporous gold catalyst for the oxidative N-dealkylation of drug molecules: A method for synthesis of N-dealkylated metabolites. ChemMedChem 17(11): e202200040. https://doi.org/10.1002/cmdc.202200040

• Blankestijn M, Bloks VW, Struik D, Huijkman N, Kloosterhuis N, Wolters JC, Wanders RJA, Vaz FM, Islinger M, Kuipers F, van de Sluis B, Groen AK, Verkade HJ, Jonker JW. 2022. Mice with a deficiency in Peroxisomal Membrane Protein 4 (PXMP4) display mild changes in hepatic lipid metabolism. Scientific Reports 12(1): 2512. https://doi.org/10.1038/s41598-022-06479-y

• Boonekamp FJ, Knibbe E, Vieira-Lara MA, Wijsman M, Luttik MAH, van Eunen K, Ridder MD, Bron R, Almonacid Suarez AM, van Rijn P, Wolters JC, Pabst M, Daran JM, Bakker BM, Daran-Lapujade P. 2022. Full humanization of the glycolytic pathway in Saccharomyces cerevisiae. Cell Reports 39(13): 111010. https://doi.org/10.1016/j.celrep.2022.111010

• Estrada-Ortiz N, Starokozhko V, van Steenwijk H, van der Heide C, Permentier H, van Heemskerk L, Prins GH, Heegsma J, Faber KN, Bressers S, Steiblen G, de Groot A, Groome S, van Miert E, Groothuis G, de Graaf IAM. 2022. Disruption of vitamin A homeostasis by the biocide tetrakis(hydroxymethyl) phosphonium sulphate in pregnant rabbits. Journal of Applied Toxicology 42(12): 1921-1936. https://doi.org/10.1002/jat.4364

• Gupta A, Burgess JK, Borghuis T, de Vries MP, Kuipers J, Permentier HP, Bischoff R, Slebos DJ, Pouwels SD. 2022. Identification of damage associated molecular patterns and extracellular matrix proteins as major constituents of the surface proteome of lung implantable silicone/nitinol devices. Acta Biomaterialia 141: 209-218. https://doi.org/10.1016/j.actbio.2022.01.016

• Joshi BS, Garcia Romeu H, Aliyandi A, de Vries MP, Zuhorn IS. 2022. DNAJB6-containing extracellular vesicles as chaperone delivery systems: a proteomic analysis. Pharmaceutics 14: 2485. https://doi.org/10.3390/pharmaceutics14112485

• Karsten REH, Krijnen NJW, Maho W, Permentier H, Verpoorte E, Olinga P. 2022. Mouse precision-cut liver slices as an ex vivo model to study drug-induced cholestasis. Archives of Toxicology 96: 2523-2543. https://doi.org/10.1007/s00204-022-03321-2

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