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Research GBB Molecular Microbiology

Billerbeck group Publications

Please find an overview of publications below.


Billerbeck, S., Prins, R. C., & Marquardt, M. (2023). A Modular Cloning Toolkit Including CRISPRi for the Engineering of the Human Fungal Pathogen and Biotechnology Host Candida glabrata. ACS Synthetic Biology, 12, 1358-1363. [00560].
Aldulijan, I., Beal, J., Billerbeck, S., Bouffard, J., Chambonnier, G., Ntelkis, N., Guerreiro, I., Holub, M., Ross, P., Selvarajah, V., Sprent, N., Vidal, G., & Vignoni, A. (2023). Functional Synthetic Biology. Synthetic biology (Oxford, England), 8(1), [ysad006].
Widodo, W. S., & Billerbeck, S. (2023). Natural and engineered cyclodipeptides: Biosynthesis, chemical diversity, and engineering strategies for diversification and high-yield bioproduction. Engineering Microbiology, 3(1), [100067].


Bhatt, D., Coenradij, J., Macia Valero, A., & Billerbeck, S. (2022). A SynBio community comes of age: Political, academical, industrial, and societal developments in the Netherlands. Biotechnology notes, 3, 62-69.
Billerbeck, S., Oliveira, A. G., & Gonçalves, A. P. (2022). Editorial: Fungi as cell factories: Genetic engineering and applications. Frontiers in Bioengineering and Biotechnology, 10, [1109992].
Beal, J., Telmer, C. A., Vignoni, A., Boada, Y., Baldwin, G. S., Hallett, L., Lee, T., Selvarajah, V., Billerbeck, S., Brown, B., Cai, G. N., Cai, L., Eisenstein, E., Kiga, D., Ross, D., Alperovich, N., Sprent, N., Thompson, J., Young, E. M., ... Haddock-Angelli, T. (2022). Multicolor plate reader fluorescence calibration. Synthetic Biology, 7(1), 1-9.
Billerbeck, S. (2022). Self-growing environmentally responsive houses made from agricultural waste and fungal mycelia. Synthetic biology (Oxford, England), 7(1), [ysac003].


Kuiper, B. P., Prins, R. C., & Billerbeck, S. (2022). Oligo pools as an affordable source of synthetic DNA for cost-effective library construction in protein- and metabolic pathway engineering. ChemBioChem, 23(7), [202100507].
Billerbeck, S., & Cornish, V. W. (2022). Peptide-Dependent Growth in Yeast via Fine-Tuned Peptide/GPCR-Activated Essential Gene Expression. Biochemistry, 61(3), 150-159. [00661].
Prins, R. C., & Billerbeck, S. (2021). A buffered media system for yeast batch culture growth. BMC Microbiology, 21(1), [127].
Billerbeck, S. (2021). A computational walk to the hidden peaks of protein performance. Synthetic biology (Oxford, England), 6(1), [ysab011].
Billerbeck, S. (2021). Moving towards chemical-free agriculture, 37 kb at a time. Synthetic biology (Oxford, England), 6(1), [ysab009].
Billerbeck, S. (2021). Synthetic biological toggle circuits that respond within seconds and teach us new biology. Synthetic biology (Oxford, England), 6(1).


Billerbeck, S. (2020). Directed evolution of synthetic coexistence: A new path towards ecosystem design? Synthetic biology (Oxford, England), 5(1), [ysaa025].


Billerbeck, S., Brisbois, J., Agmon, N., Jimenez, M., Temple, J., Shen, M., Boeke, J. D., & Cornish, V. W. (2019). Author correction: A scalable peptide-GPCR language for engineering multicellular communication (vol 9, 5057, 2018). Nature Communications, 10, [554].


Billerbeck, S., Brisbois, J., Agmon, N., Jimenez, M., Temple, J., Shen, M., Boeke, J. D., & Cornish, V. W. (2018). A scalable peptide-GPCR language for engineering multicellular communication. Nature Communications, 9, [5057].
Billerbeck, S. (2018). Small Functional Peptides and Their Application in Superfunctionalizing Proteins. In C. Smolke, S. Y. Lee, J. Nielsen, & G. Stephanopoulos (Eds.), Synthetic Biology: Parts, Devices and Applications (Vol. 8, pp. 217-235). Wiley Online Library.


Ostrov, N., Jimenez, M., Billerbeck, S., Brisbois, J., Matragrano, J., Ager, A., & Cornish, V. W. (2017). A modular yeast biosensor for low-cost point-of-care pathogen detection. Science Advances, 3(6), [e1603221].
Oesterle, S., Roberts, T. M., Widmer, L. A., Mustafa, H., Panke, S., & Billerbeck, S. (2017). Sequence-based prediction of permissive stretches for internal protein tagging and knockdown. BMC Biology, 15, [100].


Hold, C., Billerbeck, S., & Panke, S. (2016). Forward design of a complex enzyme cascade reaction. Nature Communications, 7, [12971].


Billerbeck, S., Haerle, J., & Panke, S. (2013). The good of two worlds: increasing complexity in cell-free systems. Current Opinion in Biotechnology, 24(6), 1037-1043.
Billerbeck, S., Calles, B., Mueller, C. L., de Lorenzo, V., & Panke, S. (2013). Towards functional orthogonalisation of protein complexes: individualisation of GroEL monomers leads to distinct quasihomogeneous single rings. ChemBioChem, 25(14), 2310-2312.


Billerbeck, S., & Panke, S. (2012). A genetic replacement system for selection-based engineering of essential proteins. Microbial Cell Factories, 11, [110].
Billerbeck, S., & Panke, S. (2012). Synthetische Biologie – Biotechnologie als eine Ingenieurwissenschaft. In J. Boldt, O. Mueller, & G. Maio (Eds.), Leben schaffen?: Philosophische und ethische Reflexionen zur Synthetischen Biologie (Vol. 1, pp. 19-41). Mentis Verlag GmbH.
Billerbeck, S., Dietz, S., Morgado, G., & Panke, S. (2012). Technologies for Biosystems Engineering. In C. Wittmann, & S. Y. Lee (Eds.), Systems Metabolic Engineering (Vol. 1, pp. 83-108). Springer.


Bujara, M., Billerbeck, S., & Panke, S. (2011). Multienzymnetzwerke für die Feinchemie. BIOspektrum, 17(4), 399-401.


Bujara, M., Schümperli, M., Billerbeck, S., Heinemann, M., & Panke, S. (2010). Exploiting Cell-Free Systems: Implementation and Debugging of a System of Biotransformations. Biotechnology and Bioengineering, 106(3), 376-389.
Bujara, M., Billerbeck, S., Greve, F., & Panke, S. (2010). Synthetic biology for biocatalysis. In K. N. Timmis, T. J. McGenity, J. R. van der Meer, & V. de Lorenzo (Eds.), Handbook of Hydrocarbon and Lipid Microbiology (1 ed., pp. 2939-2950). SPRINGER.
Last modified:06 December 2021 3.56 p.m.