Skip to ContentSkip to Navigation
Research GBB Molecular Microbiology

Billerbeck group Publications

Please find an overview of publications below.

2024

Maciá Valero , A., Prins, R. C., de Vroet, T., & Billerbeck, S. (2024). Combining oligo pools and Golden Gate cloning to create protein variant libraries or guide RNA libraries for CRISPR applications. APA Press.
Lu, M., & Billerbeck, S. (2024). Improving homology-directed repair by small molecule agents for genetic engineering in unconventional yeast?-Learning from the engineering of mammalian systems. Microbial Biotechnology, 17(2), Article e14398. https://doi.org/10.1111/1751-7915.14398

2023

Billerbeck, S., Prins, R. C., & Marquardt, M. (2023). A Modular Cloning Toolkit Including CRISPRi for the Engineering of the Human Fungal Pathogen and Biotechnology Host Candida glabrata. ACS Synthetic Biology, 12, 1358-1363. Article 00560. https://doi.org/10.1021/acssynbio.2c00560
Matragrano, J., Cornish, V. W., & Billerbeck, S. (2023). A Multiplex GPCR-Mediated Peptide Tagging System for a Growing Yeast Synthetic Biology Toolbox. Helvetica Chimica Acta, 106(2), Article e202300094. https://doi.org/10.1002/hlca.202300094
Aldulijan, I., Beal, J., Billerbeck, S., Bouffard, J., Chambonnier, G., Ntelkis, N., Guerreiro, I., Holub, M., Ross, P., Selvarajah, V., Sprent, N., Vidal, G., & Vignoni, A. (2023). Functional Synthetic Biology. Synthetic biology (Oxford, England), 8(1), Article ysad006. https://doi.org/10.1093/synbio/ysad006
Widodo, W. S., & Billerbeck, S. (2023). Natural and engineered cyclodipeptides: Biosynthesis, chemical diversity, and engineering strategies for diversification and high-yield bioproduction. Engineering Microbiology, 3(1), Article 100067. https://doi.org/10.1016/j.engmic.2022.100067
Berezin, C.-T., Aguilera, L. U., Billerbeck, S., Bourne, P. E., Densmore, D., Freemont, P., Gorochowski, T. E., Hernandez, S. I., Hillson, N. J., King, C. R., Köpke, M., Ma, S., Miller, K. M., Moon, T. S., Moore, J. H., Munsky, B., Myers, C. J., Nicholas, D. A., Peccoud, S. J., ... Peccoud, J. (2023). Ten simple rules for managing laboratory information. PLoS Computational Biology, 19(12), Article e1011652. https://doi.org/10.1371/journal.pcbi.1011652

2022

Bhatt, D., Crooijmans, M. E., Coenradij, J., Macia Valero, A., Lubbers, M. J., Asin-Garcia, E., Amy Yewdall, N., D'Adamo, S., Claassens, N. J., & Billerbeck, S. (2022). A SynBio community comes of age: Political, academical, industrial, and societal developments in the Netherlands. Biotechnology notes, 3, 62-69. https://doi.org/10.1016/j.biotno.2022.07.004
Billerbeck, S., Oliveira, A. G., & Gonçalves, A. P. (2022). Editorial: Fungi as cell factories: Genetic engineering and applications. Frontiers in Bioengineering and Biotechnology, 10, Article 1109992. https://doi.org/10.3389/fbioe.2022.1109992
Beal, J., Telmer, C. A., Vignoni, A., Boada, Y., Baldwin, G. S., Hallett, L., Lee, T., Selvarajah, V., Billerbeck, S., Brown, B., Cai, G. N., Cai, L., Eisenstein, E., Kiga, D., Ross, D., Alperovich, N., Sprent, N., Thompson, J., Young, E. M., ... Haddock-Angelli, T. (2022). Multicolor plate reader fluorescence calibration. Synthetic Biology, 7(1), 1-9. https://doi.org/10.1093/synbio/ysac010
Billerbeck, S. (2022). Self-growing environmentally responsive houses made from agricultural waste and fungal mycelia. Synthetic biology (Oxford, England), 7(1), Article ysac003. https://doi.org/10.1093/synbio/ysac003

2021

Kuiper, B. P., Prins, R. C., & Billerbeck, S. (2022). Oligo pools as an affordable source of synthetic DNA for cost-effective library construction in protein- and metabolic pathway engineering. ChemBioChem, 23(7), Article 202100507. https://doi.org/10.1002/cbic.202100507
Billerbeck, S., & Cornish, V. W. (2022). Peptide-Dependent Growth in Yeast via Fine-Tuned Peptide/GPCR-Activated Essential Gene Expression. Biochemistry, 61(3), 150-159. Article 00661. https://doi.org/10.1021/acs.biochem.1c00661
Prins, R. C., & Billerbeck, S. (2021). A buffered media system for yeast batch culture growth. BMC Microbiology, 21(1), Article 127. https://doi.org/10.1186/s12866-021-02191-5
Billerbeck, S. (2021). A computational walk to the hidden peaks of protein performance. Synthetic biology (Oxford, England), 6(1), Article ysab011. https://doi.org/10.1093/synbio/ysab011
Billerbeck, S. (2021). Moving towards chemical-free agriculture, 37 kb at a time. Synthetic biology (Oxford, England), 6(1), Article ysab009. https://doi.org/10.1093/synbio/ysab009
Billerbeck, S. (2021). Synthetic biological toggle circuits that respond within seconds and teach us new biology. Synthetic biology (Oxford, England), 6(1). https://doi.org/10.1093/synbio/ysab027

2020

Billerbeck, S. (2020). Directed evolution of synthetic coexistence: A new path towards ecosystem design? Synthetic biology (Oxford, England), 5(1), Article ysaa025. https://doi.org/10.1093/synbio/ysaa025

2019

Billerbeck, S., Brisbois, J., Agmon, N., Jimenez, M., Temple, J., Shen, M., Boeke, J. D., & Cornish, V. W. (2019). Author correction: A scalable peptide-GPCR language for engineering multicellular communication (vol 9, 5057, 2018). Nature Communications, 10, Article 554. https://doi.org/10.1038/s41467-019-08545-y

2018

Billerbeck, S., Brisbois, J., Agmon, N., Jimenez, M., Temple, J., Shen, M., Boeke, J. D., & Cornish, V. W. (2018). A scalable peptide-GPCR language for engineering multicellular communication. Nature Communications, 9, Article 5057. https://doi.org/10.1038/s41467-018-07610-2
Billerbeck, S. (2018). Small Functional Peptides and Their Application in Superfunctionalizing Proteins. In C. Smolke, S. Y. Lee, J. Nielsen, & G. Stephanopoulos (Eds.), Synthetic Biology: Parts, Devices and Applications (Vol. 8, pp. 217-235). Wiley Online Library. https://doi.org/10.1002/9783527688104.ch11

2017

Ostrov, N., Jimenez, M., Billerbeck, S., Brisbois, J., Matragrano, J., Ager, A., & Cornish, V. W. (2017). A modular yeast biosensor for low-cost point-of-care pathogen detection. Science Advances, 3(6), Article e1603221. https://doi.org/10.1126/sciadv.1603221
Oesterle, S., Roberts, T. M., Widmer, L. A., Mustafa, H., Panke, S., & Billerbeck, S. (2017). Sequence-based prediction of permissive stretches for internal protein tagging and knockdown. BMC Biology, 15, Article 100. https://doi.org/10.1186/s12915-017-0440-0

2016

Hold, C., Billerbeck, S., & Panke, S. (2016). Forward design of a complex enzyme cascade reaction. Nature Communications, 7, Article 12971. https://doi.org/10.1038/ncomms12971

2013

Billerbeck, S., Haerle, J., & Panke, S. (2013). The good of two worlds: increasing complexity in cell-free systems. Current Opinion in Biotechnology, 24(6), 1037-1043. https://doi.org/10.1016/j.copbio.2013.03.007
Billerbeck, S., Calles, B., Mueller, C. L., de Lorenzo, V., & Panke, S. (2013). Towards functional orthogonalisation of protein complexes: individualisation of GroEL monomers leads to distinct quasihomogeneous single rings. ChemBioChem, 25(14), 2310-2312. https://doi.org/10.1002/cbic.201300332

2012

Billerbeck, S., & Panke, S. (2012). A genetic replacement system for selection-based engineering of essential proteins. Microbial Cell Factories, 11, Article 110. https://doi.org/10.1186/1475-2859-11-110
Billerbeck, S., & Panke, S. (2012). Synthetische Biologie – Biotechnologie als eine Ingenieurwissenschaft. In J. Boldt, O. Mueller, & G. Maio (Eds.), Leben schaffen?: Philosophische und ethische Reflexionen zur Synthetischen Biologie (Vol. 1, pp. 19-41). Mentis Verlag GmbH.
Billerbeck, S., Dietz, S., Morgado, G., & Panke, S. (2012). Technologies for Biosystems Engineering. In C. Wittmann, & S. Y. Lee (Eds.), Systems Metabolic Engineering (Vol. 1, pp. 83-108). Springer.

2011

Bujara, M., Billerbeck, S., & Panke, S. (2011). Multienzymnetzwerke für die Feinchemie. BIOspektrum, 17(4), 399-401. https://doi.org/10.1007/s12268-011-0061-z

2010

Bujara, M., Schümperli, M., Billerbeck, S., Heinemann, M., & Panke, S. (2010). Exploiting Cell-Free Systems: Implementation and Debugging of a System of Biotransformations. Biotechnology and Bioengineering, 106(3), 376-389. https://doi.org/10.1002/bit.22666
Bujara, M., Billerbeck, S., Greve, F., & Panke, S. (2010). Synthetic biology for biocatalysis. In K. N. Timmis, T. J. McGenity, J. R. van der Meer, & V. de Lorenzo (Eds.), Handbook of Hydrocarbon and Lipid Microbiology (1 ed., pp. 2939-2950). Springer.
Last modified:09 June 2023 8.36 p.m.