Billerbeck group Publications

Billerbeck, S., Prins, R. C., & Marquardt, M. (2023). A Modular Cloning Toolkit Including CRISPRi for the Engineering of the Human Fungal Pathogen and Biotechnology Host Candida glabrata. ACS Synthetic Biology, 12, 1358-1363. [00560]. https://doi.org/10.1021/acssynbio.2c00560

Aldulijan, I., Beal, J., Billerbeck, S., Bouffard, J., Chambonnier, G., Ntelkis, N., Guerreiro, I., Holub, M., Ross, P., Selvarajah, V., Sprent, N., Vidal, G., & Vignoni, A. (2023). Functional Synthetic Biology. Synthetic biology (Oxford, England), 8(1), [ysad006]. https://doi.org/10.1093/synbio/ysad006

Widodo, W. S., & Billerbeck, S. (2023). Natural and engineered cyclodipeptides: Biosynthesis, chemical diversity, and engineering strategies for diversification and high-yield bioproduction. Engineering Microbiology, 3(1), [100067]. https://doi.org/10.1016/j.engmic.2022.100067

Bhatt, D., Coenradij, J., Macia Valero, A., & Billerbeck, S. (2022). A SynBio community comes of age: Political, academical, industrial, and societal developments in the Netherlands. Biotechnology notes, 3, 62-69. https://doi.org/10.1016/j.biotno.2022.07.004

Billerbeck, S., Oliveira, A. G., & Gonçalves, A. P. (2022). Editorial: Fungi as cell factories: Genetic engineering and applications. Frontiers in Bioengineering and Biotechnology, 10, [1109992]. https://doi.org/10.3389/fbioe.2022.1109992

Beal, J., Telmer, C. A., Vignoni, A., Boada, Y., Baldwin, G. S., Hallett, L., Lee, T., Selvarajah, V., Billerbeck, S., Brown, B., Cai, G. N., Cai, L., Eisenstein, E., Kiga, D., Ross, D., Alperovich, N., Sprent, N., Thompson, J., Young, E. M., ... Haddock-Angelli, T. (2022). Multicolor plate reader fluorescence calibration. Synthetic Biology, 7(1), 1-9. https://doi.org/10.1093/synbio/ysac010

Billerbeck, S. (2022). Self-growing environmentally responsive houses made from agricultural waste and fungal mycelia. Synthetic biology (Oxford, England), 7(1), [ysac003]. https://doi.org/10.1093/synbio/ysac003

Kuiper, B. P., Prins, R. C., & Billerbeck, S. (2022). Oligo pools as an affordable source of synthetic DNA for cost-effective library construction in protein- and metabolic pathway engineering. ChemBioChem, 23(7), [202100507]. https://doi.org/10.1002/cbic.202100507

Billerbeck, S., & Cornish, V. W. (2022). Peptide-Dependent Growth in Yeast via Fine-Tuned Peptide/GPCR-Activated Essential Gene Expression. Biochemistry, 61(3), 150-159. [00661]. https://doi.org/10.1021/acs.biochem.1c00661

Prins, R. C., & Billerbeck, S. (2021). A buffered media system for yeast batch culture growth. BMC Microbiology, 21(1), [127]. https://doi.org/10.1186/s12866-021-02191-5

Billerbeck, S. (2021). A computational walk to the hidden peaks of protein performance. Synthetic biology (Oxford, England), 6(1), [ysab011]. https://doi.org/10.1093/synbio/ysab011

Billerbeck, S. (2021). Moving towards chemical-free agriculture, 37 kb at a time. Synthetic biology (Oxford, England), 6(1), [ysab009]. https://doi.org/10.1093/synbio/ysab009

Billerbeck, S. (2021). Synthetic biological toggle circuits that respond within seconds and teach us new biology. Synthetic biology (Oxford, England), 6(1). https://doi.org/10.1093/synbio/ysab027

Billerbeck, S. (2020). Directed evolution of synthetic coexistence: A new path towards ecosystem design? Synthetic biology (Oxford, England), 5(1), [ysaa025]. https://doi.org/10.1093/synbio/ysaa025

Billerbeck, S., Brisbois, J., Agmon, N., Jimenez, M., Temple, J., Shen, M., Boeke, J. D., & Cornish, V. W. (2019). Author correction: A scalable peptide-GPCR language for engineering multicellular communication (vol 9, 5057, 2018). Nature Communications, 10, [554]. https://doi.org/10.1038/s41467-019-08545-y

Billerbeck, S., Brisbois, J., Agmon, N., Jimenez, M., Temple, J., Shen, M., Boeke, J. D., & Cornish, V. W. (2018). A scalable peptide-GPCR language for engineering multicellular communication. Nature Communications, 9, [5057]. https://doi.org/10.1038/s41467-018-07610-2

Ostrov, N., Jimenez, M., Billerbeck, S., Brisbois, J., Matragrano, J., Ager, A., & Cornish, V. W. (2017). A modular yeast biosensor for low-cost point-of-care pathogen detection. Science Advances, 3(6), [e1603221]. https://doi.org/10.1126/sciadv.1603221

Oesterle, S., Roberts, T. M., Widmer, L. A., Mustafa, H., Panke, S., & Billerbeck, S. (2017). Sequence-based prediction of permissive stretches for internal protein tagging and knockdown. BMC Biology, 15, [100]. https://doi.org/10.1186/s12915-017-0440-0

Hold, C., Billerbeck, S., & Panke, S. (2016). Forward design of a complex enzyme cascade reaction. Nature Communications, 7, [12971]. https://doi.org/10.1038/ncomms12971

Billerbeck, S., Haerle, J., & Panke, S. (2013). The good of two worlds: increasing complexity in cell-free systems. Current Opinion in Biotechnology, 24(6), 1037-1043. https://doi.org/10.1016/j.copbio.2013.03.007

Billerbeck, S., Calles, B., Mueller, C. L., de Lorenzo, V., & Panke, S. (2013). Towards functional orthogonalisation of protein complexes: individualisation of GroEL monomers leads to distinct quasihomogeneous single rings. ChemBioChem, 25(14), 2310-2312. https://doi.org/10.1002/cbic.201300332

Billerbeck, S., & Panke, S. (2012). A genetic replacement system for selection-based engineering of essential proteins. Microbial Cell Factories, 11, [110]. https://doi.org/10.1186/1475-2859-11-110

Bujara, M., Billerbeck, S., & Panke, S. (2011). Multienzymnetzwerke für die Feinchemie. BIOspektrum, 17(4), 399-401. https://doi.org/10.1007/s12268-011-0061-z

Bujara, M., Schümperli, M., Billerbeck, S., Heinemann, M., & Panke, S. (2010). Exploiting Cell-Free Systems: Implementation and Debugging of a System of Biotransformations. Biotechnology and Bioengineering, 106(3), 376-389. https://doi.org/10.1002/bit.22666