Links

ClustalW – Multiple sequence alignment

http://www.ebi.ac.uk/Tools/msa/clustalw2/

Tcoffee – Multiple sequence alignment

http://tcoffee.vital-it.ch/apps/tcoffee/do:regular

S. Cerevisiae Ubiquitination Database

http://scud.kaist.ac.kr/

GGbase – Human Ubiquitination database

https://gygi.med.harvard.edu/ggbase/

Uniprot – Protein knowledgebase

http://www.uniprot.org/

ExPASy – Bioinformatics Resource portal

http://www.expasy.org/tools/

Protparam – Protein parameter prediction tool

http://web.expasy.org/protparam/

DNA to Protein translation program

http://web.expasy.org/translate/

Lalign – DNA and protein alignment program

http://www.ch.embnet.org/software/LALIGN_form.html

Secondary structure prediction programs

http://www.biogem.org/tool/chou-fasman/

http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html

Tertiary structure prediction programs

http://swissmodel.expasy.org/

http://bmm.cancerresearchuk.org/~3djigsaw/

http://bmm.cancerresearchuk.org/~populus/

http://clsb.ices.utexas.edu/loopp/web/

SMART – Protein domain prediction tool

http://smart.embl-heidelberg.de/

Pubmed – scientific literature database

http://www.ncbi.nlm.nih.gov/pubmed/

S. cerevisiae genome database

http://www.yeastgenome.org/

H. polymorpha genome database

http://genome.jgi-psf.org/Hanpo2/Hanpo2.home.html

Boxshade – Publication quality sequence alignments

http://www.ch.embnet.org/software/BOX_form.html

PDB – Protein structure databank

http://www.pdb.org/pdb/home/home.do

Analysing gels and western blots with ImageJ

http://lukemiller.org/index.php/2010/11/analyzing-gels-and-western-blots-with-image-j/

Cyclebase – Database of cell cycle regulation

http://cyclebase.org/

Prediction of transmembrane domains in proteins

http://www.ch.embnet.org/software/TMPRED_form.html

http://mobyle.pasteur.fr/cgi-bin/portal.py?#forms::toppred

Book Chemidoc

http://www.molgenrug.nl/index.php/liform#Chemidoc

Journal citation reports

http://admin-apps.webofknowledge.com/JCR/JCR?PointOfEntry=Home&SID=P1quQQMqvAY9vFpZR6K