A. (Arkajyoti) Bhattacharya

Senior researcher, Translational Bioinformatics team, Department of Medical Oncology

Telephone:

E-mail:

a.bhattacharya umcg.nl

2024	Antigoni Papadhima; University of Groningen, Biomedical Sciences, Summer internship; Supervisors: A. Bhattacharya; Title: Preprocessing and quality control of spatial transcriptomic samples
2024	Jesper Post; University of Groningen, Biomedical Sciences, Research Project Biomedical Sciences; Supervisors: A. Bhattacharya, R.S.N. Fehrmann; Title: Differential expression patterns between predicted cell types in spatial transcriptomics of cancer subtypes.
2024	Peter te Velde; University of Groningen, Biomedical Sciences, Research Project Biomedical Sciences; Supervisors: A. Bhattacharya, R.S.N. Fehrmann; Title: Differential expression patterns between predicted cell types: The analysis of spatial cancer transcriptomes.
2024	Argyro Anagnostopoulou; University of Groningen, MSc Biomedical Sciences: Biology of Cancer and Immune System, Masters thesis; Supervisors: A Bhattacharya, R.S.N. Fehrmann; Title: Investigating the relation between copy number alterations and immune transcriptional footprints in the context of spatial transcriptomics in cancer
2024	Feija Somefun; University of Groningen, Medicine, Masters thesis; Supervisors: R.S.N. Fehrmann, M. de Bruyn, A Bhattacharya; Title: Unravelling specific copy number alterations in cancer using independent transcriptional components and spatial transcriptomics.
2023	Samaneh Shahpouri, Hooman Hanaei, Roya Yousefi, Raheleh Yousefi; Department of Data science, Hanze University of Applied Sciences Groningen, Masters project; Supervisors: A. Bhattacharya, Setareh Rezaee. Title: Improving Gene-set Enrichment Analysis: A Novel Method to Mitigate the Impact of Knowledge Gaps.
2023	Shubhayan Pan & Deepam Saha; Indian Statistical Institute, Bachelors in Statistics, Summer internship; Supervisors: A. Bhattacharya, Soudeep Deb. Title: Mathematical base to a divide and conquer strategy for conducting independent component analysis on large-scale data.
2023	Tomas Vogels; University of Groningen, Biomedical Sciences, colloquium Biomedical Sciences; Supervisors: R.S.N. Fehrmann, A Bhattacharya; Title: The promise of synthetic data.
2023	Dennis Wiersma; Hanze University of Applied Sciences, Bioinformatics, internship project; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Machine learning driven tissue prediction.
2023	Feija Somefun; University of Groningen, Medicine, Pilot project Junior Scientific Masterclass; Supervisors: R.S.N. Fehrmann, M. de Bruyn, A Bhattacharya; Title: Unraveling the biological mechanisms behind TLS in EC using independent transcriptional components and spatial transcriptomics.
2022	Alexandra Kolle; University of Groningen, Biomedical Sciences, Research Project Biomedical Sciences; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Classifying cancer patients based on survival information and expression levels of oncogene-induced replication stress signature genes.
2022	Kieron Mayle; University of Groningen, Biomedical Sciences, Research Project Biomedical Sciences; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Classifying cancer patients based on survival information and expression levels of oncogene-induced replication stress signature genes.
2021	Zoë Verstappen; Hanze University of Applied Sciences, Bioinformatics, internship project; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Gene set enrichment drive batch correction.
2021	Mark Frederiks; Hanze University of Applied Sciences, Data Science for Life Sciences, Master thesis; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Harmonize and infer missing values in large-scale gene-expression datasets.
2021	Thanh Pham; University of Groningen, Biomedical Sciences, Research Project Biomedical Sciences; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Exploring association between tumor-microenvironment and clinic pathological information of patients with breast cancer.
2021	Malou Oude Vrielink; University of Groningen, Biomedical Sciences, Research Project Biomedical Sciences; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Exploring association between tumor-microenvironment and clinic pathological information of patients with breast cancer.
2021	Liesje Bloembergen; Hanze University of Applied Sciences, Bioinformatics, Bachelor thesis; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Inferring and harmonizing expression profiles with consensus independent components.
2020	Shanlin Tong, Medicine, Touch-Try-Teach (TTT) project, Junior Scientific Masterclass, Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Removing batch effects in survival data.
2020	Liesje Bloembergen; Hanze University of Applied Sciences, Bioinformatics, internship project; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Exploring the immunosuppressive effect of SCNAs.
2020	Dylan Mezach, University of Groningen, Faculty of Science and Engineering, internship; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Extracting a biological relevant latent space from a large number of transcriptomes using a generative adversarial network (GAN).
2019	Jeffry Shu, University of Groningen, The International Master in Innovative Medicine (IMIM), MSc-thesis; Supervisor: R.S.N. Fehrmann, A. Bhattacharya; Title: A machine learning approach to predict anticancer drug sensitivity.
2019	Willemijn F Oudijk; Hanze University of Applied Sciences, Bioinformatics, internship project; Supervisors: R.S.N. Fehrmann, A. Bhattacharya; Title: Using gene expression data to gain insight into genes involved in Microsatellite Instability.
2019	Dylan Mezach, Hanze University of Applied Sciences, Life Science and Technology, Bachelor thesis; Supervisors: R.S.N. Fehrmann, S. de Jong, A. Bhattacharya; Title: Improving immunotherapy by altering glucose metabolism and target discovery using gene expression profiles of cutaneous melanoma samples.

Last modified:26 July 2024 11.12 a.m.