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Research Zernike (ZIAM) Theory of Condensed Matter Knoester Group

Publications

2021

Nguyen, H. L., Do, T. N., Akhtar, P., Jansen, T. L. C., Knoester, J., Wang, W., Shen, J-R., Lambrev, P. H., & Tan, H-S. (2021). An Exciton Dynamics Model of Bryopsis corticulans Light-Harvesting Complex II. Journal of Physical Chemistry B, 125(4), 1134-1143. https://doi.org/10.1021/acs.jpcb.0c10634

2020

Bondarenko, A. S., Knoester, J., & Jansen, T. L. C. (2020). Comparison of methods to study excitation energy transfer in molecular multichromophoric systems. Chemical Physics, 529, [110478]. https://doi.org/10.1016/j.chemphys.2019.110478
Bondarenko, A. S., Jansen, T. L. C., & Knoester, J. (2020). Exciton localization in tubular molecular aggregates: Size effects and optical response. Journal of Chemical Physics, 152(19), [194302]. https://doi.org/10.1063/5.0008688
Kriete, B., Bondarenko, A. S., Alessandri, R., Patmanidis, I., Krasnikov, V. V., Jansen, T. L. C., Marrink, S. J., Knoester, J., & Pshenichnikov, M. S. (2020). Molecular versus excitonic disorder in individual artificial light-harvesting systems. Journal of the American Chemical Society, 142(42), 18073-18085. [jacs.0c07392]. https://doi.org/10.1021/jacs.0c07392
Bondarenko, A. S., Patmanidis, I., Alessandri, R., Souza, P. C. T., Jansen, T. L. C., de Vries, A. H., Marrink, S. J., & Knoester, J. (2020). Multiscale modeling of molecular structure and optical properties of complex supramolecular aggregates. Chemical Science, 11(42), 11514-11524. https://doi.org/10.1039/d0sc03110k
Kunsel, T., Loehner, A., Mayo, J. J., Koehler, J., Jansen, T. L. C., & Knoester, J. (2020). Unraveling intra-aggregate structural disorder using single-molecule spectroscopy. Journal of Chemical Physics, 153(13), [134304]. https://doi.org/10.1063/5.0023551

2019

Kriete, B., Luettig, J., Kunsel, T., Maly, P., Jansen, T. L. C., Knoester, J., Brixner, T., & Pshenichnikov, M. S. (2019). Interplay between structural hierarchy and exciton diffusion in artificial light harvesting. Nature Communications, 10, [4615]. https://doi.org/10.1038/s41467-019-12345-9
Nugroho, B. S., Iskandar, A. A., Malyshev, V. A., & Knoester, J. (2019). Plasmon-assisted two-photon Rabi oscillations in a semiconductor quantum dot - metal nanoparticle heterodimer. Physical Review B, 99(7), [075302]. https://doi.org/10.1103/PhysRevB.99.075302
Loehner, A., Kunsel, T., Roehr, M. I. S., Jansen, T. L. C., Sengupta, S., Wuerthner, F., Knoester, J., & Koehler, J. (2019). Spectral and Structural Variations of Biomimetic Light-Harvesting Nanotubes. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 10(11), 2715-2724. https://doi.org/10.1021/acs.jpclett.9b00303

2018

Thyrhaug, E., Tempelaar, R., Alcocer, M. J. P., Zidek, K., Bina, D., Knoester, J., Jansen, T. L. C., & Zigmantas, D. (2018). Identification and characterization of diverse coherences in the Fenna-Matthews-Olson complex. Nature Chemistry, 10(7), 780-786. https://doi.org/10.1038/s41557-018-0060-5
Guenther, L. M., Loehner, A., Reiher, C., Kunsel, T., Jansen, T. L. C., Tank, M., Bryant, D. A., Knoester, J., & Koehler, J. (2018). Structural Variations in Chlorosomes from Wild-Type and a bchQR Mutant of Chlorobaculum tepidum Revealed by Single-Molecule Spectroscopy. Journal of Physical Chemistry B, 122(26), 6712-6723. https://doi.org/10.1021/acs.jpcb.8b02875
Farag, M. H., Jansen, T. L. C., & Knoester, J. (2018). The origin of absorptive features in the two-dimensional electronic spectra of rhodopsin. PPCP : Physical Chemistry Chemical Physics, 20(18), 12746-12754. https://doi.org/10.1039/c8cp00638e
Compaijen, P. J., Malyshev, V. A., & Knoester, J. (2018). Time-dependent transport of a localized surface plasmon through a linear array of metal nanoparticles: Precursor and normal mode contributions. Physical Review. B: Condensed Matter and Materials Physics, 97(8), [085428]. https://doi.org/10.1103/PhysRevB.97.085428

2017

Guenther, L. M., Jendrny, M., Bloemsma, E. A., Tank, M., Oostergetel, G. T., Bryant, D. A., Knoester, J., & Kohler, J. (2017). Correction to “Structure of Light-Harvesting Aggregates in Individual Chlorosomes”. Journal of Physical Chemistry B, 121(23), 5882. https://doi.org/10.1021/acs.jpcb.7b04945
Wan, Y., Stradomska, A., Knoester, J., & Huang, L. (2017). Direct Imaging of Exciton Transport in Tubular Porphyrin Aggregates by Ultrafast Microscopy. Journal of the American Chemical Society, 139(21), 7287-7293. https://doi.org/10.1021/jacs.7b01550
Tempelaar, R., Jansen, T. L. C., & Knoester, J. (2017). Exciton-Exciton Annihilation Is Coherently Suppressed in H-Aggregates, but Not in J-Aggregates. The Journal of Physical Chemistry Letters, 8(24), 6113-6117. https://doi.org/10.1021/acs.jpclett.7b02745
Farag, M. H., Hoenders, B. J., Knoester, J., & Jansen, T. L. C. (2017). Spectral line shapes in linear absorption and two-dimensional spectroscopy with skewed frequency distributions. Journal of Chemical Physics, 146(23), [234201]. https://doi.org/10.1063/1.4985665
Kriete, B., Bondarenko, A. S., Jumde, V. R., Franken, L. E., Minnaard, A. J., Jansen, T. L. C., Knoester, J., & Pshenichnikov, M. S. (2017). Steering Self-Assembly of Amphiphilic Molecular Nanostructures via Halogen Exchange. The Journal of Physical Chemistry Letters, 8(13), 2895-2901. https://doi.org/10.1021/acs.jpclett.7b00967
Johnson, P. J. M., Farag, M. H., Halpin, A., Morizumi, T., Prokhorenko, V. I., Knoester, J., Jansen, T. L. C., Ernst, O. P., & Miller, R. J. D. (2017). The Primary Photochemistry of Vision Occurs at the Molecular Speed Limit. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 121(16), 4040-4047. https://doi.org/10.1021/acs.jpcb.7b02329

2016

Nugroho, B. S., Iskandar, A. A., Malyshev, V. A., & Knoester, J. (2017). Instabilities in the optical response of a semiconductor quantum dot-metal nanoparticle heterodimer: self-oscillations and chaos. Journal of Optics, 19(1), [015004]. https://doi.org/10.1088/2040-8986/19/1/015004
Tempelaar, R., Koster, L. J. A., Havenith, R. W. A., Knoester, J., & Jansen, T. L. C. (2016). Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials. The Journal of Physical Chemistry Letters, 7(1), 198-203. https://doi.org/10.1021/acs.jpclett.5b02580
Tempelaar, R., Koster, J. A., Havenith, R., Knoester, J., & Jansen, T. (2016). Charge recombination suppressed by destructive quantum interference in heterojunction materials. Abstracts of Papers of the American Chemical Society, 252.
Tempelaar, R., Koster, L. J. A., Havenith, R. W. A., Knoester, J., & Jansen, T. L. C. (2016). Correction to “Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials”. The Journal of Physical Chemistry Letters, 7(18), 3659-3659. https://doi.org/10.1021/acs.jpclett.6b01956
Compaijen, P. J., Malyshev, V. A., & Knoester, J. (2016). Elliptically polarized modes for the unidirectional excitation of surface plasmon polaritons. Optics Express, 24(4), 3858-3872. https://doi.org/10.1364/OE.24.003858
Dijkstra, A. G., Duan, H-G., Knoester, J., Nelson, K. A., & Cao, J. (2016). How two-dimensional brick layer J-aggregates differ from linear ones: Excitonic properties and line broadening mechanisms. Journal of Chemical Physics, 144(13), [134310]. https://doi.org/10.1063/1.4944980
Tempelaar, R., Halpin, A., Johnson, P. J. M., Cai, J., Murphy, R. S., Knoester, J., Miller, R. J. D., & Jansen, T. L. C. (2016). Laser-Limited Signatures of Quantum Coherence. The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory, 120(19), 3042-3048. https://doi.org/10.1021/acs.jpca.5b10312
Farag, M. H., Jansen, T. L. C., & Knoester, J. (2016). Probing the Interstate Coupling near a Conical Intersection by Optical Spectroscopy. The Journal of Physical Chemistry Letters, 7(17), 3328-3334. https://doi.org/10.1021/acs.jpclett.6b01463
Chuang, C., Lee, C. K., Moix, J. M., Knoester, J., & Cao, J. (2016). Quantum Diffusion on Molecular Tubes: Universal Scaling of the 1D to 2D Transition. Physical Review Letters, 116(19), [196803]. https://doi.org/10.1103/PhysRevLett.116.196803
Guenther, L. M., Jendrny, M., Bloemsma, E. A., Tank, M., Oostergetel, G. T., Bryant, D. A., Knoester, J., & Koehler, J. (2016). Structure of Light-Harvesting Aggregates in Individual Chlorosomes. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 120(24), 5367-5376. https://doi.org/10.1021/acs.jpcb.6b03718
Bloemsma, E. A., Silvis, M. H., Stradomska, A., & Knoester, J. (2016). Vibronic effects and destruction of exciton coherence in optical spectra of J-aggregates: A variational polaron transformation approach. Chemical Physics, 481, 250-261. https://doi.org/10.1016/j.chemphys.2016.06.018

2015

van der Vegte, N., Prajapati, J., Kleinekathoefer, U., Knoester, J., & Jansen, T. (2015). Atomistic Modeling of Two-Dimensional Electronic Spectra and Excited State Dynamics for a Light Harvesting 2 Complex. The Journal of Physical Chemistry B, 119(4), 1302–1313. https://doi.org/10.1021/jp509247p
Compaijen, P. J., Malyshev, V. A., & Knoester, J. (2015). Engineering plasmon dispersion relations: hybrid nanoparticle chain - substrate plasmon polaritons. Optics Express, 23(3), 2280-2292. https://doi.org/10.1364/OE.23.002280
Hestand, N. J., Tempelaar, R., Knoester, J., Jansen, T. L. C., & Spano, F. C. (2015). Exciton mobility control through sub-angstrom packing modifications in molecular crystals. Physical Review. B: Condensed Matter and Materials Physics, 91(19), [195315]. https://doi.org/10.1103/PhysRevB.91.195315
Broer, W., Waalkens, H., Svetovoy, V., Knoester, J., & Palasantzas, G. (2015). Nonlinear Actuation Dynamics of Driven Casimir Oscillators with Rough Surfaces. Physical Review Applied, 4(5), [054016]. https://doi.org/10.1103/PhysRevApplied.4.054016
Bloemsma, E. A., Vlaming, S. M., Malyshev, V. A., & Knoester, J. (2015). Signature of Anomalous Exciton Localization in the Optical Response of Self-Assembled Organic Nanotubes. Physical Review Letters, 114(15), [156804]. https://doi.org/10.1103/PhysRevLett.114.156804
Nugroho, B. S., Malyshev, V. A., & Knoester, J. (2015). Tailoring optical response of a hybrid comprising a quantum dimer emitter strongly coupled to a metallic nanoparticle. Physical Review B, 92(16), [165432]. https://doi.org/10.1103/PhysRevB.92.165432

2014

Wan, Y., Stradomska, A., Fong, S., Guo, Z., Schaller, R. D., Wiederrecht, G. P., Knoester, J., & Huang, L. (2014). Exciton Level Structure and Dynamics in Tubular Porphyrin Aggregates. The Journal of Physical Chemistry. C: Nanomaterials and Interfaces, 118(43), 24854-24865. https://doi.org/10.1021/jp507435a
Haverkort, F., Stradomska, A., Vries, A. H. D., & Knoester, J. (2014). First-Principles Calculation of the Optical Properties of an Amphiphilic Cyanine Dye Aggregate. The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory, 118(6), 1012-1023. https://doi.org/10.1021/jp4112487
Haverkort, F., Stradomska, A., & Knoester, J. (2014). First-Principles Simulations of the Initial Phase of Self-Aggregation of a Cyanine Dye: Structure and Optical Spectra. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 118(29), 8877-8890. https://doi.org/10.1021/jp5049277
Jumper, C. C., Anna, J. M., Stradomska, A., Schins, J., Myahkostupov, M., Prusakova, V., Oblinsky, D. G., Castellano, F. N., Knoester, J., & Scholes, G. D. (2014). Intramolecular radiationless transitions dominate exciton relaxation dynamics. Chemical Physics Letters, 599, 23-33. https://doi.org/10.1016/j.cplett.2014.03.007
Tempelaar, R., Spano, F. C., Knoester, J., & Jansen, T. L. C. (2014). Mapping the Evolution of Spatial Exciton Coherence through Time-Resolved Fluorescence. The Journal of Physical Chemistry Letters, 5(9), 1505-1510. https://doi.org/10.1021/jz500488u
van der Vegte, C. P., Knop, S., Voehringer, P., Knoester, J., & Jansen, T. L. C. (2014). OH-Stretching in Synthetic Hydrogen-Bonded Chains. The Journal of Physical Chemistry B, 118(23), 6256-6264. https://doi.org/10.1021/jp504267h
Eisele, D. M., Arias, D. H., Fu, X., Bloemsma, E. A., Steiner, C. P., Jensen, R. A., Rebentrost, P., Eisele, H., Tokmakoff, A., Lloyd, S., Nelson, K. A., Nicastro, D., Knoester, J., & Bawendi, M. G. (2014). Robust excitons inhabit soft supramolecular nanotubes. Proceedings of the National Academy of Science of the United States of America, 111(33), E3367-E3375. https://doi.org/10.1073/pnas.1408342111
Chuang, C., Knoester, J., & Cao, J. (2014). Scaling Relations and Optimization of Excitonic Energy Transfer Rates between One-Dimensional Molecular Aggregates. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 118(28), 7827-7834. https://doi.org/10.1021/jp4124502
Halpin, A., Johnson, P. J. M., Tempelaar, R., Murphy, R. S., Knoester, J., Jansen, T. L. C., & Miller, R. J. D. (2014). Two-dimensional spectroscopy of a molecular dimer unveils the effects of vibronic coupling on exciton coherences. Nature Chemistry, 6(3), 196-201. https://doi.org/10.1038/NCHEM.1834
Tempelaar, R., Jansen, T. L. C., & Knoester, J. (2014). Vibrational Beatings Conceal Evidence of Electronic Coherence in the FMO Light-Harvesting Complex. The Journal of Physical Chemistry B, 118(45), 12865-12872. https://doi.org/10.1021/jp510074q

2013

Tempelaar, R., Stradomska, A., Knoester, J., & Spano, F. C. (2013). Anatomy of an Exciton: Vibrational Distortion and Exciton Coherence in H- and J-Aggregates. Journal of Physical Chemistry B, 117(1), 457-466. https://doi.org/10.1021/jp310298n
Nugroho, B., Iskandar, A., Malyshev, V. A., & Knoester, J. (2013). Bistable optical response of a nanoparticle heterodimer: Mechanism, phase diagram, and switching time. Journal of Chemical Physics, 139(1), 014303-1-014303-8. [014303]. https://doi.org/10.1063/1.4811181
van der Vegte, C. P., Dijkstra, A. G., Knoester, J., & Jansen, T. L. C. (2013). Calculating Two-Dimensional Spectra with the Mixed Quantum-Classical Ehrenfest Method. The Journal of Physical Chemistry A, 117(29), 5970-5980. https://doi.org/10.1021/jp311668r
Haverkort, F., Stradomska, A., de Vries, A. H., & Knoester, J. (2013). Investigating the Structure of Aggregates of an Amphiphilic Cyanine Dye with Molecular Dynamics Simulations. Journal of Physical Chemistry B, 117(19), 5857-5867. https://doi.org/10.1021/jp4005696
Munarriz, J., Malyshev, A. V., Malyshev, V. A., & Knoester, J. (2013). Optical Nanoantennas with Tunable Radiation Patterns. Nano Letters, 13(2), 444-450. https://doi.org/10.1021/nl303815a
Broer, W., Palasantzas, G., Knoester, J., & Svetovoy, V. B. (2013). Significance of the Casimir force and surface roughness for actuation dynamics of MEMS. Physical Review. B: Condensed Matter and Materials Physics, 87(12), 125413-1-125413-7. https://doi.org/10.1103/PhysRevB.87.125413
Vlaming, S. M., Malyshev, V. A., Eisfeld, A., & Knoester, J. (2013). Subdiffusive exciton motion in systems with heavy-tailed disorder. Journal of Chemical Physics, 138(21), 214316-1-214316-10. [214316]. https://doi.org/10.1063/1.4808155
Compaijen, P. J., Malyshev, V. A., & Knoester, J. (2013). Substrate-mediated sub-diffraction guiding of optical signals through a linear chain of metal nanoparticles: Polarization dependence and the role of the dispersion relation. In Advanced Electromagnetic Materials in Microwaves and Optics (METAMATERIALS), 2013 7th International Congress on (pp. 247-249). IEEE (The Institute of Electrical and Electronics Engineers). https://doi.org/10.1109/MetaMaterials.2013.6809015
Tempelaar, R., van der Vegte, C. P., Knoester, J., & Jansen, T. L. C. (2013). Surface hopping modeling of two-dimensional spectra. Journal of Chemical Physics, 138(16), 164106-1-164106-10. [164106]. https://doi.org/10.1063/1.4801519
Compaijen, P. J., Malyshev, V. A., & Knoester, J. (2013). Surface-mediated light transmission in metal nanoparticle chains. Physical Review. B: Condensed Matter and Materials Physics, 87(20), 205437-1-205437-7. [205437]. https://doi.org/10.1103/PhysRevB.87.205437
Liang, C., Louhivuori, M., Marrink, S. J., Jansen, T. L. C., & Knoester, J. (2013). Vibrational Spectra of a Mechanosensitive Channel. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 4(3), 448-452. https://doi.org/10.1021/jz3019258

2012

Eisfeld, A., Vlaming, S. M., Moebius, S., Malyshev, V. A., & Knoester, J. (2012). Comment on "Excitons in Molecular Aggregates with Levy-Type Disorder: Anomalous Localization and Exchange Broadening of Optical Spectra" Reply. Physical Review Letters, 109(25), 259702-1-259702-1. [259702]. https://doi.org/10.1103/PhysRevLett.109.259702
Jansen, T. L. C., Dijkstra, A. G., Watson, T. M., Hirst, J. D., & Knoester, J. (2012). Erratum: “Modeling the amide I bands of small peptides” [J. Chem. Phys. 125, 044312 (2006)]. Journal of Chemical Physics, 136(20), [209901]. https://doi.org/10.1063/1.4722584
Lessing, J., Roy, S., Reppert, M., Baer, M., Marx, D., Jansen, T. L. C., Knoester, J., & Tokmakoff, A. (2012). Identifying Residual Structure in Intrinsically Disordered Systems: A 2D IR Spectroscopic Study of the GVGXPGVG Peptide. Journal of the American Chemical Society, 134(11), 5032-5035. https://doi.org/10.1021/ja2114135
Bloemsma, E. A., & Knoester, J. (2012). Photon emission statistics and photon tracking in single-molecule spectroscopy of molecular aggregates: Dimers and trimers. Journal of Chemical Physics, 136(22), 224507-1-224507-14. [224507]. https://doi.org/10.1063/1.4719210
Liang, C., Knoester, J., & Jansen, T. L. C. (2012). Proton Transport in a Membrane Protein Channel: Two-Dimensional Infrared Spectrum Modeling. Journal of Physical Chemistry B, 116(22), 6336-6345. https://doi.org/10.1021/jp3019827
Broer, W., Palasantzas, G., Knoester, J., & Svetovoy, V. B. (2012). Roughness correction to the Casimir force at short separations: Contact distance and extreme value statistics. Physical Review. B: Condensed Matter and Materials Physics, 85(15), [155410]. https://doi.org/10.1103/PhysRevB.85.155410
Eisele, D. M., Cone, C. W., Bloemsma, E. A., Vlaming, S. M., van der Kwaak, C. G. F., Silbey, R. J., Bawendi, M. G., Knoester, J., Rabe, J. P., & Vanden Bout, D. A. (2012). Utilizing redox-chemistry to elucidate the nature of exciton transitions in supramolecular dye nanotubes. Nature Chemistry, 4(8), 655-662. https://doi.org/10.1038/NCHEM.1380

2011

Tempelaar, R., Stradomska, A., Knoester, J., & Spano, F. C. (2011). Circularly Polarized Luminescence as a Probe for Long-Range Interactions in Molecular Aggregates. Journal of Physical Chemistry B, 115(36), 10592-10603. https://doi.org/10.1021/jp2053019
Vlaming, S. M., Bloemsma, E. A., Nietiadi, M. L., & Knoester, J. (2011). Disorder-induced exciton localization and violation of optical selection rules in supramolecular nanotubes. Journal of Chemical Physics, 134(11), 114507-1-114507-11. [114507]. https://doi.org/10.1063/1.3528993
Marocico, C. A., & Knoester, J. (2011). Effect of surface-plasmon polaritons on spontaneous emission and intermolecular energy-transfer rates in multilayered geometries. Physical Review A, 84(5), 053824-1-053824-11. [053824]. https://doi.org/10.1103/PhysRevA.84.053824
Olbrich, C., Jansen, T. L. C., Liebers, J., Aghtar, M., Struempfer, J., Schulten, K., Knoester, J., Kleinekathoefer, U., & Strümpfer, J. (2011). From Atomistic Modeling to Excitation Transfer and Two-Dimensional Spectra of the FMO Light-Harvesting Complex. Journal of Physical Chemistry B, 115(26), 8609-8621. https://doi.org/10.1021/jp202619a
Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2011). Modeling the Vibrational Dynamics and Nonlinear Infrared Spectra of Coupled Amide I and II Modes in Peptides. Journal of Physical Chemistry B, 115(18), 5392-5401. https://doi.org/10.1021/jp109431a
Liang, C., Jansen, T. L. C., & Knoester, J. (2011). Proton transport in biological systems can be probed by two-dimensional infrared spectroscopy. Journal of Chemical Physics, 134(4), 044502-1-044502-8. [044502]. https://doi.org/10.1063/1.3522770
Broer, W., Palasantzas, G., Knoester, J., & Svetovoy, V. B. (2011). Roughness correction to the Casimir force beyond perturbation theory. Europhysics Letters, 95(3), 30001-p1-30001-p6. [30001]. https://doi.org/10.1209/0295-5075/95/30001
Roy, S., Lessing, J., Meisl, G., Ganim, Z., Tokmakoff, A., Knoester, J., & Jansen, T. L. C. (2011). Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline. Journal of Chemical Physics, 135(23), 234507-1-234507-11. [234507]. https://doi.org/10.1063/1.3665417
Chernyak, V. Y., Knoester, J., & Tretiak, S. (2011). Tribute to Shaul Mukamel. Journal of Physical Chemistry B, 115(18), 5037-5038. https://doi.org/10.1021/jp202931j

2010

Malyshev, A. V., Malyshev, V. A., & Knoester, J. (2010). CONTROLLING OPTICAL SIGNALS AT THE SUB-WAVELENGTH SCALE: BENT AND Y-SHAPED ARRAYS OF METAL NANO-PARTICLES. In L. Vina, C. Tejedor, & JM. Calleja (Eds.), 11TH INTERNATIONAL CONFERENCE ON OPTICS OF EXCITONS IN CONFINED SYSTEMS (OECS11) (Journal of Physics Conference Series; Vol. 210). IOP PUBLISHING LTD.
Eisfeld, A., Vlaming, S. M., Malyshev, V. A., & Knoester, J. (2010). Excitons in Molecular Aggregates with Lévy-Type Disorder: Anomalous Localization and Exchange Broadening of Optical Spectra. Physical Review Letters, 105(13), 137402-1-137402-4. [137402]. https://doi.org/10.1103/PhysRevLett.105.137402
Smith, A. W., Lessing, J., Ganim, Z., Peng, C. S., Tokmakoff, A., Roy, S., Jansen, T. L. C., & Knoester, J. (2010). Melting of a beta-Hairpin Peptide Using Isotope-Edited 2D IR Spectroscopy and Simulations. Journal of Physical Chemistry B, 114(34), 10913-10924. https://doi.org/10.1021/jp104017h
Augulis, R., Malyshev, A. V., Malyshev, V. A., Pugzlys, A., Knoester, J., & van Loosdrecht, P. H. M. (2010). Quest for Order in Chaos: Hidden Repulsive Level Statistics in Disordered Quantum Nanoaggregates. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 1(19), 2911-2916. https://doi.org/10.1021/jz101003j
Stradomska, A., & Knoester, J. (2010). Shape of the Q band in the absorption spectra of porphyrin nanotubes: Vibronic coupling or exciton effects? Journal of Chemical Physics, 133(9), 094701-1-094701-10. [094701]. https://doi.org/10.1063/1.3481654
Roy, S., Jansen, T. L. C., & Knoester, J. (2010). Structural classification of the amide I sites of a beta-hairpin with isotope label 2DIR spectroscopy. Physical Chemistry Chemical Physics, 12(32), 9347-9357. https://doi.org/10.1039/b925645h
Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2010). Two-Dimensional Spectroscopy of Extended Molecular Systems: Applications to Energy Transport and Relaxation in an alpha-Helix. The Journal of Physical Chemistry A, 114(27), 7315-7320. https://doi.org/10.1021/jp9111124

2009

Dykstra, T. E., Hennebicq, E., Beljonne, D., Gierschner, J., Claudio, G., Bittner, E. R., Knoester, J., & Scholes, G. D. (2009). Conformational Disorder and Ultrafast Exciton Relaxation in PPV-family Conjugated Polymers. Journal of Physical Chemistry B, 113(3), 656-667. https://doi.org/10.1021/jp807249b
Vlaming, S. M., Augulis, R., Stuart, M. C. A., Knoester, J., & van Loosdrecht, P. H. M. (2009). Exciton spectra and the microscopic structure of self-assembled porphyrin nanotubes. Journal of Physical Chemistry B, 113(8), 2273-2283. https://doi.org/10.1021/jp808235c
Marocico, C. A., & Knoester, J. (2009). Intermolecular resonance energy transfer in the presence of a dielectric cylinder. Physical Review A, 79(5), 053816-1-053816-15. [053816]. https://doi.org/10.1103/PhysRevA.79.053816
Vlaming, S., Malyshev, V. A., & Knoester, J. (2009). Localization properties of one-dimensional Frenkel excitons: Gaussian versus Lorentzian diagonal disorder. Physical Review. B: Condensed Matter and Materials Physics, 79(20), 205121-1-205121-8. [205121]. https://doi.org/10.1103/PhysRevB.79.205121
Eisele, D. M., Knoester, J., Kirstein, S., Rabe, J. P., Vanden Bout, D. A., & Rabe, J. P. (2009). Uniform exciton fluorescence from individual molecular nanotubes immobilized on solid substrates. Nature Nanotechnology, 4(10), 658-663. https://doi.org/10.1038/nnano.2009.227
Jansen, T. L. C., & Knoester, J. (2009). Waiting Time Dynamics in Two-Dimensional Infrared Spectroscopy. Accounts of Chemical Research, 42(9), 1405-1411. https://doi.org/10.1021/ar900025a

2008

Malyshev, A., Malyshev, V., & Knoester, J. (2008). Frequency-controlled localization of optical signals in graded plasmonic chains. Nano Letters, 8(8), 2369-2372. https://doi.org/10.1021/nl8011962
Klugkist, J., Malyshev, V., & Knoester, J. (2008). Intrinsic optical bistability of thin films of linear molecular aggregates: The two-exciton approximation. Journal of Chemical Physics, 128(8), [084706]. https://doi.org/10.1063/1.2832312
Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2008). Localization and coherent dynamics of excitons in the two-dimensional optical spectrum of molecular J-aggregates. Journal of Chemical Physics, 128(16), [164511]. https://doi.org/10.1063/1.2897753
Klugkist, J., Malyshev, V. A., & Knoester, J. (2008). Scaling and universality in the optics of disordered exciton chains. Physical Review Letters, 100(21), 1-4. [216403]. https://doi.org/10.1103/PhysRevLett.100.216403
Klugkist, J. A., Malyshev, V. A., & Knoester, J. (2008). Selection of dominant multi-exciton transitions in disordered linear J-aggregates. Journal of Luminescence, 128(5-6), 945-947. https://doi.org/10.1016/j.jlumin.2007.11.052
Bloem, R., Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2008). Simulation of vibrational energy transfer in two-dimensional infrared spectroscopy of amide I and amide II modes in solution. Journal of Chemical Physics, 129(5), [055101]. https://doi.org/10.1063/1.2961020
Vlaming, S. M., Malyshev, V. A., & Knoester, J. (2008). Thermal effects in exciton harvesting in biased one-dimensional systems. Journal of Luminescence, 128(5-6), 956-959. https://doi.org/10.1016/j.jlumin.2007.11.038
Jansen, T. L. C., & Knoester, J. (2008). Two-dimensional infrared population transfer spectroscopy for enhancing structural markers of proteins. Biophysical Journal, 94(5), 1818-1825. https://doi.org/10.1529/biophysj.107.118851

2007

Jansen, T. L. C., & Knoester, J. (2007). Calculation of two-dimensional infrared spectra of ultrafast chemical exchange with numerical Langevin simulations. Journal of Chemical Physics, 127(23), [234502]. https://doi.org/10.1063/1.2806179
Klugkist, J. A., Malyshev, V. A., & Knoester, J. (2007). Intrinsic optical bistability of thin films of linear molecular aggregates: The one-exciton approximation. Journal of Chemical Physics, 127(16), [164705]. https://doi.org/10.1063/1.2789416
Vlaming, S. M., Malyshev, V. A., & Knoester, J. (2007). Nonmonotonic energy harvesting efficiency in biased exciton chains. Journal of Chemical Physics, 127(15), 154719: 1-8. [154719]. https://doi.org/10.1063/1.2784556
Malyshev, A. V., Malyshev, V. A., & Knoester, J. (2007). Probing quantum-mechanical level repulsion in disordered systems by means of time-resolved selectively excited resonance fluorescence. Physical Review Letters, 98(8), [087401]. https://doi.org/10.1103/PhysRevLett.98.087401
Heijs, D-J., Dijkstra, A. G., & Knoester, J. (2007). Ultrafast pump-probe spectroscopy of linear molecular aggregates: Effects of exciton coherence and thermal dephasing. Chemical Physics, 341(1-3), 230-239. https://doi.org/10.1016/j.chemphys.2007.06.050
Dijkstra, A. G., Jansen, T. L. C., Bloem, R., & Knoester, J. (2007). Vibrational relaxation in simulated two-dimensional infrared spectra of two amide modes in solution. Journal of Chemical Physics, 127(19), [194505]. https://doi.org/10.1063/1.2786455
Last modified:13 October 2015 3.54 p.m.