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ResearchZernike (ZIAM)Molecular BiophysicsVlijm group

Publications

Peer reviewed

  • Vlijm, R., et al., STED nanoscopy of the centrosome linker reveals a CEP68-organized, periodic rootletin network anchored to a C-Nap1 ring at centrioles . Proc Natl Acad Sci U S A , 2018. 115(10): p. E2246 E2253.
  • Vlijm, R., et al., The supercoiling state of DNA determines the handedness of both H3 and CENP-A nucleosomes. Nanoscale, 2017. 9(5): p. 1862-1870.
  • Butkevich, A.N., et al., Hydroxylated Fluorescent Dyes for Live-Cell Labeling: Synthesis, Spectra and Super-Resolution STED. Chemistry, 2017. 23(50): p. 12114-12119.
  • Kim, S.H., et al., CENP-A and H3 Nucleosomes Display a Similar Stability to Force-Mediated Disassembly. PLoS One, 2016. 11(11): p. e0165078.
  • Vlijm, R., et al., Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence. Nanoscale, 2015. 7(7): p. 3205-16.
  • Vlijm, R., et al., Comparing the Assembly and Handedness Dynamics of (H3.3-H4)2 Tetrasomes to Canonical Tetrasomes. PLoS One, 2015. 10(10): p. e0141267.
  • Vlijm, R., et al., Nucleosome assembly dynamics involve spontaneous fluctuations in the handedness of tetrasomes. Cell Rep, 2015. 10(2): p. 216-25.
  • Vlijm, R., V.D.T. J, and C. Dekker, Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting. PLoS One, 2015. 10(10): p. e0141576.
  • Katan, A.J., et al., Dynamics of nucleosomal structures measured by high-speed atomic force microscopy. Small, 2015. 11(8): p. 976-84.
  • Vlijm, R., et al., NAP1-assisted nucleosome assembly on DNA measured in real time by single-molecule magnetic tweezers. PLoS One, 2012. 7(9): p. e46306.
  • Patil, A.V., et al., Fabrication and characterization of polymer insulated carbon nanotube modified electrochemical nanoprobes. Nanoscale, 2010. 2(5): p. 734-8.

Other

  • Thesis: Vlijm, R., Assembling a single-molecule view on nucleosome dynamics, in Bionanoscience. 2014, Delft University of Technology: Delft. p. 164.
  • Vlijm, R., et al., STED Nanoscopy of the Centrosome Linker Reveals a CEP68-Organized, Periodic Rootletin Network Anchored to a C-Nap1 Ring at Centrioles. Biophysical Journal, 2018. 114(3): p. 535a.
  • Ordu, O., et al., Investigating the Handedness Dynamics of Tetrasomes. Biophysical Journal, 2016. 110(3): p. 562a.
  • Hyun Kim, S., et al., The Handedness of Nucleosomes is Governed by the Supercoiling of DNA. Biophysical Journal, 2016. 110(3): p. 70a.
  • Vlijm, R., et al., Nucleosome Assembly Dynamics Involve Spontaneous Fluctuations in the Handedness of Tetrasomes. Biophysical Journal, 2015. 108(2): p. 205a.
  • Vlijm, R., Y. Dalal, and C. Dekker, Torque Mediated Kinetics of CENP-A Nucleosomes Reveals Resilience to Tension. Biophysical Journal, 2015. 108(2): p. 539a.
  • Vlijm, R., et al., Nucleosome Dynamics Involve Spontaneous Fluctuations in the Handedness of Tetrasomes. Biophysical Journal, 2014. 106(2): p. 74a.
  • Katan, A., et al., Dynamics of NAP1-Assisted Nucleosome Assembly Imaged with High-Speed Atomic Force Microscopy. Biophysical Journal, 2014. 106(2): p. 429a.
  • Vlijm, R., et al., NAP1-Assisted Nucleosome Assembly on DNA Measured in Real Time by Single-Molecule Magnetic Tweezers. Biophysical Journal, 2013. 104(2): p. 38a-39a.
  • Vlijm, R., et al., Real Time Visualization of hRPA Binding to Torsionally Controlled Double-Stranded DNA. Biophysical Journal, 2013. 104(2): p. 73a.
  • Soni, G., et al., Nucleosome Detection using Solid State Nanopores. Biophysical Journal, 2012. 102(3): p. 730a.
Last modified:30 September 2019 09.05 a.m.