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Research GELIFES GREEN Lequime Lab

Publications

2020

Faye, O., de Lourdes Monteiro, M., Vrancken, B., Prot, M., Lequime, S., Diarra, M., ... Simon-Loriere, E. (2020). Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde. Emerging Infectious Diseases, 26(6), 1084-1090. https://doi.org/10.3201/eid2606.190928
Düx, A., Lequime, S., Patrono, L. V., Vrancken, B., Boral, S., Gogarten, J. F., ... Calvignac-Spencer, S. (2020). Measles virus and rinderpest virus divergence dated to the sixth century BCE. Science, 368(6497), 1367-1370. https://doi.org/10.1126/science.aba9411
Suzuki, Y., Baidaliuk, A., Miesen, P., Frangeul, L., Crist, A. B., Merkling, S. H., ... Saleh, M-C. (2020). Non-retroviral Endogenous Viral Element Limits Cognate Virus Replication in Aedes aegypti Ovaries. Current Biology. https://doi.org/10.1016/j.cub.2020.06.057
Lequime, S., Paul, B., Dellicour, S., Lemey, P., & Baele, G. (2020). nosoi: A stochastic agent-based transmission chain simulation framework in R. Methods in ecology and evolution, 11, 1002-1007. https://doi.org/10.1111/2041-210X.13422
Baidaliuk, A., Lequime, S., Moltini-Conclois, I., Dabo, S., Dickson, L. B., Prot, M., ... Lambrechts, L. (2020). Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny with the genetic structure of Aedes aegypti populations. Virus evolution, 6(1), [veaa018]. https://doi.org/10.1093/ve/veaa018
Altinli, M., Lequime, S., Atyame, C., Justy, F., Weill, M., & Sicard, M. (2020). Wolbachia modulates prevalence and viral load of Culex pipiens densoviruses in natural populations. Molecular Ecology. https://doi.org/10.1111/mec.15609

2019

Baidaliuk, A., Miot, E. F., Lequime, S., Moltini-Conclois, I., Delaigue, F., Dabo, S., ... Lambrechts, L. (2019). Cell-Fusing Agent Virus Reduces Arbovirus Dissemination in Aedes aegypti Mosquitoes In Vivo. Journal of Virology, 93(18). https://doi.org/10.1128/JVI.00705-19
Altinli, M., Lequime, S., Courcelle, M., François, S., Justy, F., Gosselin-Grenet, A-S., ... Sicard, M. (2019). Evolution and phylogeography of Culex pipiens densovirus. Virus evolution, 5(2), [vez053]. https://doi.org/10.1093/ve/vez053
de Borba, L., Villordo, S. M., Marsico, F. L., Carballeda, J. M., Filomatori, C. V., Gebhard, L. G., ... Gamarnik, A. V. (2019). RNA Structure Duplication in the Dengue Virus 3' UTR: Redundancy or Host Specificity? Mbio, 10(1). https://doi.org/10.1128/mBio.02506-18

2018

Peccoud, J., Lequime, S., Moltini-Conclois, I., Giraud, I., Lambrechts, L., & Gilbert, C. (2018). A Survey of Virus Recombination Uncovers Canonical Features of Artificial Chimeras Generated During Deep Sequencing Library Preparation. G3 : Genes, Genomes, Genetics, 8(4), 1129-1138. https://doi.org/10.1534/g3.117.300468
Fontaine, A., Lequime, S., Moltini-Conclois, I., Jiolle, D., Leparc-Goffart, I., Reiner, R. C., & Lambrechts, L. (2018). Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics. PLoS Pathogens, 14(7), [e1007187]. https://doi.org/10.1371/journal.ppat.1007187

2017

Lequime, S., & Lambrechts, L. (2017). Discovery of flavivirus-derived endogenous viral elements in Anopheles mosquito genomes supports the existence of Anopheles-associated insect-specific flaviviruses. Virus evolution, 3(1), [vew035]. https://doi.org/10.1093/ve/vew035
Lequime, S., Richard, V., Cao-Lormeau, V-M., & Lambrechts, L. (2017). Full-genome dengue virus sequencing in mosquito saliva shows lack of convergent positive selection during transmission by Aedes aegypti. Virus evolution, 3(2), [vex031]. https://doi.org/10.1093/ve/vex031

2016

Lequime, S., Paul, R. E., & Lambrechts, L. (2016). Determinants of Arbovirus Vertical Transmission in Mosquitoes. PLoS Pathogens, 12(5), [e1005548]. https://doi.org/10.1371/journal.ppat.1005548
Lambrechts, L., & Lequime, S. (2016). Evolutionary dynamics of dengue virus populations within the mosquito vector. Current opinion in virology, 21, 47-53. https://doi.org/10.1016/j.coviro.2016.07.013
Fontaine, A., Jiolle, D., Moltini-Conclois, I., Lequime, S., & Lambrechts, L. (2016). Excretion of dengue virus RNA by Aedes aegypti allows non-destructive monitoring of viral dissemination in individual mosquitoes. Scientific Reports, 6, [24885]. https://doi.org/10.1038/srep24885
Lequime, S., Fontaine, A., Ar Gouilh, M., Moltini-Conclois, I., & Lambrechts, L. (2016). Genetic Drift, Purifying Selection and Vector Genotype Shape Dengue Virus Intra-host Genetic Diversity in Mosquitoes. PLoS genetics, 12(6), e1006111. https://doi.org/10.1371/journal.pgen.1006111

2014

Lequime, S., & Lambrechts, L. (2014). Vertical transmission of arboviruses in mosquitoes: A historical perspective. Infection genetics and evolution, 28, 681-90. https://doi.org/10.1016/j.meegid.2014.07.025

2010

Vrancken, B., Lequime, S., Theys, K., & Lemey, P. (2010). Covering all bases in HIV research: Unveiling a hidden world of viral evolution. Aids reviews, 12(2), 89-102.
Last modified:05 August 2020 1.06 p.m.