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Research GELIFES GREEN Lequime Lab



Faye, O., de Lourdes Monteiro, M., Vrancken, B., Prot, M., Lequime, S., Diarra, M., ... Simon-Loriere, E. (2020). Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde. Emerging Infectious Diseases, 26(6), 1084-1090.
Düx, A., Lequime, S., Patrono, L. V., Vrancken, B., Boral, S., Gogarten, J. F., ... Calvignac-Spencer, S. (2020). Measles virus and rinderpest virus divergence dated to the sixth century BCE. Science, 368(6497), 1367-1370.
Suzuki, Y., Baidaliuk, A., Miesen, P., Frangeul, L., Crist, A. B., Merkling, S. H., ... Saleh, M-C. (2020). Non-retroviral Endogenous Viral Element Limits Cognate Virus Replication in Aedes aegypti Ovaries. Current Biology.
Lequime, S., Paul, B., Dellicour, S., Lemey, P., & Baele, G. (2020). nosoi: A stochastic agent-based transmission chain simulation framework in R. Methods in ecology and evolution, 11, 1002-1007.
Baidaliuk, A., Lequime, S., Moltini-Conclois, I., Dabo, S., Dickson, L. B., Prot, M., ... Lambrechts, L. (2020). Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny with the genetic structure of Aedes aegypti populations. Virus evolution, 6(1), [veaa018].
Altinli, M., Lequime, S., Atyame, C., Justy, F., Weill, M., & Sicard, M. (2020). Wolbachia modulates prevalence and viral load of Culex pipiens densoviruses in natural populations. Molecular Ecology.


Baidaliuk, A., Miot, E. F., Lequime, S., Moltini-Conclois, I., Delaigue, F., Dabo, S., ... Lambrechts, L. (2019). Cell-Fusing Agent Virus Reduces Arbovirus Dissemination in Aedes aegypti Mosquitoes In Vivo. Journal of Virology, 93(18).
Altinli, M., Lequime, S., Courcelle, M., François, S., Justy, F., Gosselin-Grenet, A-S., ... Sicard, M. (2019). Evolution and phylogeography of Culex pipiens densovirus. Virus evolution, 5(2), [vez053].
de Borba, L., Villordo, S. M., Marsico, F. L., Carballeda, J. M., Filomatori, C. V., Gebhard, L. G., ... Gamarnik, A. V. (2019). RNA Structure Duplication in the Dengue Virus 3' UTR: Redundancy or Host Specificity? Mbio, 10(1).


Peccoud, J., Lequime, S., Moltini-Conclois, I., Giraud, I., Lambrechts, L., & Gilbert, C. (2018). A Survey of Virus Recombination Uncovers Canonical Features of Artificial Chimeras Generated During Deep Sequencing Library Preparation. G3 : Genes, Genomes, Genetics, 8(4), 1129-1138.
Fontaine, A., Lequime, S., Moltini-Conclois, I., Jiolle, D., Leparc-Goffart, I., Reiner, R. C., & Lambrechts, L. (2018). Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics. PLoS Pathogens, 14(7), [e1007187].


Lequime, S., & Lambrechts, L. (2017). Discovery of flavivirus-derived endogenous viral elements in Anopheles mosquito genomes supports the existence of Anopheles-associated insect-specific flaviviruses. Virus evolution, 3(1), [vew035].
Lequime, S., Richard, V., Cao-Lormeau, V-M., & Lambrechts, L. (2017). Full-genome dengue virus sequencing in mosquito saliva shows lack of convergent positive selection during transmission by Aedes aegypti. Virus evolution, 3(2), [vex031].


Lequime, S., Paul, R. E., & Lambrechts, L. (2016). Determinants of Arbovirus Vertical Transmission in Mosquitoes. PLoS Pathogens, 12(5), [e1005548].
Lambrechts, L., & Lequime, S. (2016). Evolutionary dynamics of dengue virus populations within the mosquito vector. Current opinion in virology, 21, 47-53.
Fontaine, A., Jiolle, D., Moltini-Conclois, I., Lequime, S., & Lambrechts, L. (2016). Excretion of dengue virus RNA by Aedes aegypti allows non-destructive monitoring of viral dissemination in individual mosquitoes. Scientific Reports, 6, [24885].
Lequime, S., Fontaine, A., Ar Gouilh, M., Moltini-Conclois, I., & Lambrechts, L. (2016). Genetic Drift, Purifying Selection and Vector Genotype Shape Dengue Virus Intra-host Genetic Diversity in Mosquitoes. PLoS genetics, 12(6), e1006111.


Lequime, S., & Lambrechts, L. (2014). Vertical transmission of arboviruses in mosquitoes: A historical perspective. Infection genetics and evolution, 28, 681-90.


Vrancken, B., Lequime, S., Theys, K., & Lemey, P. (2010). Covering all bases in HIV research: Unveiling a hidden world of viral evolution. Aids reviews, 12(2), 89-102.
Last modified:05 August 2020 1.06 p.m.