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Research Zernike (ZIAM) Theory of Condensed Matter Jansen Group

Publications

2020

Bondarenko, A. S., Knoester, J., & Jansen, T. L. C. (2020). Comparison of methods to study excitation energy transfer in molecular multichromophoric systems. Chemical Physics, 529, [110478]. https://doi.org/10.1016/j.chemphys.2019.110478
Bondarenko, A. S., Jansen, T. L. C., & Knoester, J. (2020). Exciton localization in tubular molecular aggregates: Size effects and optical response. Journal of Chemical Physics, 152(19), [194302]. https://doi.org/10.1063/5.0008688
Kriete, B., Bondarenko, A. S., Alessandri, R., Patmanidis, I., Krasnikov, V. V., Jansen, T. L. C., ... Pshenichnikov, M. S. (2020). Molecular versus excitonic disorder in individual artificial light-harvesting systems. Journal of the American Chemical Society, [jacs.0c07392]. https://doi.org/10.1021/jacs.0c07392
Cao, J., Cogdell, R. J., Coker, D. F., Duan, H-G., Hauer, J., Kleinekathoefer, U., ... Zigmantas, D. (2020). Quantum biology revisited. Science Advances, 6(14), [eaaz4888]. https://doi.org/10.1126/sciadv.aaz4888
Baiz, C. R., Blasiak, B., Bredenbeck, J., Cho, M., Choi, J-H., Corcelli, S. A., ... Zanni, M. T. (2020). Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction. Chemical reviews, 120(15), 7152-7218. https://doi.org/10.1021/acs.chemrev.9b00813

2019

Kriete, B., Luettig, J., Kunsel, T., Maly, P., Jansen, T. L. C., Knoester, J., ... Pshenichnikov, M. S. (2019). Interplay between structural hierarchy and exciton diffusion in artificial light harvesting. Nature Communications, 10, [4615]. https://doi.org/10.1038/s41467-019-12345-9
Kunsel, T., Tiwari, V., Matutes, Y. A., Gardiner, A. T., Cogdell, R. J., Ogilvie, J. P., & Jansen, T. L. C. (2019). Simulating Fluorescence-Detected Two-Dimensional Electronic Spectroscopy of Multichromophoric Systems. Journal of Physical Chemistry B, 123(2), 394-406. https://doi.org/10.1021/acs.jpcb.8b10176
Loehner, A., Kunsel, T., Roehr, M. I. S., Jansen, T. L. C., Sengupta, S., Wuerthner, F., ... Koehler, J. (2019). Spectral and Structural Variations of Biomimetic Light-Harvesting Nanotubes. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 10(11), 2715-2724. https://doi.org/10.1021/acs.jpclett.9b00303
Jansen, T. L. C., Saito, S., Jeon, J., & Cho, M. (2019). Theory of coherent two-dimensional vibrational spectroscopy. Journal of Chemical Physics, 150(10), [100901]. https://doi.org/10.1063/1.5083966
Zhang, Q., Solanki, A., Parida, K., Giovanni, D., Li, M., Jansen, T. L. C., ... Sum, T. C. (2019). Tunable Ferroelectricity in Ruddlesden-Popper Halide Perovskites. ACS Applied Materials & Interfaces, 11(14), 13523-13532. https://doi.org/10.1021/acsami.8b21579
Jansen, T. L. C. (2019). Unraveling Molecular Packing in Two-Dimensional Excitonic Systems. Chem, 5(12), 3010-3012. https://doi.org/10.1016/j.chempr.2019.11.011

2018

Kopec, W., Koepfer, D. A., Vickery, O. N., Bondarenko, A. S., Jansen, T. L. C., de Groot, B. L., & Zachariae, U. (2018). Direct knock-on of desolvated ions governs strict ion selectivity in K+ channels. Nature Chemistry, 10(8), 813-820. https://doi.org/10.1038/s41557-018-0105-9
Salamatova, E., Cunha, A. V., Bloem, R., Roeters, S. J., Woutersen, S., Jansen, T. L. C., & Pshenichnikov, M. S. (2018). Hydrophobic Collapse in N-Methylacetamide Water Mixtures. The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory, 122(9), 2468-2478. https://doi.org/10.1021/acs.jpca.8b00276
Thyrhaug, E., Tempelaar, R., Alcocer, M. J. P., Zidek, K., Bina, D., Knoester, J., ... Zigmantas, D. (2018). Identification and characterization of diverse coherences in the Fenna-Matthews-Olson complex. Nature Chemistry, 10(7), 780-786. https://doi.org/10.1038/s41557-018-0060-5
Gallop, N. P., Selig, O., Giubertoni, G., Bakker, H. J., Rezus, Y. L. A., Frost, J. M., ... Bakulin, A. A. (2018). Rotational Cation Dynamics in Metal Halide Perovskites: Effect on Phonons and Material Properties. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 9(20), 5987-5997. https://doi.org/10.1021/acs.jpclett.8b02227
Jansen, T. L. C. (2018). Simple Quantum Dynamics with Thermalization. The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory, 122(1), 172-183. https://doi.org/10.1021/acs.jpca.7b10380
Bari, S., Egorov, D., Jansen, T. L. C., Boll, R., Hoekstra, R., Techert, S., ... Schlathölter, T. (2018). Soft X-ray spectroscopy as a probe for gas-phase protein structure: Electron impact ionization from within. Chemistry, 24(30), 7631-7636. https://doi.org/10.1002/chem.201801440
Tiwari, V., Matutes, Y. A., Gardiner, A. T., Jansen, T. L. C., Cogdell, R. J., & Ogilvie, J. P. (2018). Spatially-resolved fluorescence-detected two-dimensional electronic spectroscopy probes varying excitonic structure in photosynthetic bacteria. Nature Communications, 9, [4219]. https://doi.org/10.1038/s41467-018-06619-x
Guenther, L. M., Loehner, A., Reiher, C., Kunsel, T., Jansen, T. L. C., Tank, M., ... Koehler, J. (2018). Structural Variations in Chlorosomes from Wild-Type and a bchQR Mutant of Chlorobaculum tepidum Revealed by Single-Molecule Spectroscopy. Journal of Physical Chemistry B, 122(26), 6712-6723. https://doi.org/10.1021/acs.jpcb.8b02875
Selig, O., Cunha, A. V., van Eldijk, M. B., van Hest, J. C. M., Jansen, T. L. C., Bakker, H. J., & Rezus, Y. L. A. (2018). Temperature-Induced Collapse of Elastin-like Peptides Studied by 2DIR Spectroscopy. Journal of Physical Chemistry B, 122(34), 8243-8254. https://doi.org/10.1021/acs.jpcb.8b05221
Farag, M. H., Jansen, T. L. C., & Knoester, J. (2018). The origin of absorptive features in the two-dimensional electronic spectra of rhodopsin. PPCP : Physical Chemistry Chemical Physics, 20(18), 12746-12754. https://doi.org/10.1039/c8cp00638e

2017

Tempelaar, R., Jansen, T. L. C., & Knoester, J. (2017). Exciton-Exciton Annihilation Is Coherently Suppressed in H-Aggregates, but Not in J-Aggregates. The Journal of Physical Chemistry Letters, 8(24), 6113-6117. https://doi.org/10.1021/acs.jpclett.7b02745
Salamatova, E., Cunha, A. V., Shinokita, K., Jansen, T. L. C., & Pshenichnikov, M. S. (2017). Hydrogen bond and lifetime dynamics in diluted alcohols. PPCP : Physical Chemistry Chemical Physics, 19(41), 27960-27967. https://doi.org/10.1039/c7cp03222f
Cunha, A. V., Salamatova, E., Bloem, R., Roeters, S. J., Woutersen, S., Pshenichnikov, M. S., & Jansen, T. L. C. (2017). Interplay between Hydrogen Bonding and Vibrational Coupling in Liquid N-Methylacetamide. The Journal of Physical Chemistry Letters, 8(11), 2438-2444. https://doi.org/10.1021/acs.jpclett.7b00731
Selig, O., Sadhanala, A., Muller, C., Lovrincic, R., Chen, Z., Rezus, Y. L. A., ... Bakulin, A. A. (2017). Organic Cation Rotation and Immobilization in Pure and Mixed Methylammonium Lead-Halide Perovskites. Journal of the American Chemical Society, 139(11), 4068-4074. https://doi.org/10.1021/jacs.6b12239
Farag, M. H., Hoenders, B. J., Knoester, J., & Jansen, T. L. C. (2017). Spectral line shapes in linear absorption and two-dimensional spectroscopy with skewed frequency distributions. Journal of Chemical Physics, 146(23), [234201]. https://doi.org/10.1063/1.4985665
Kriete, B., Bondarenko, A. S., Jumde, V. R., Franken, L. E., Minnaard, A. J., Jansen, T. L. C., ... Pshenichnikov, M. S. (2017). Steering Self-Assembly of Amphiphilic Molecular Nanostructures via Halogen Exchange. The Journal of Physical Chemistry Letters, 8(13), 2895-2901. https://doi.org/10.1021/acs.jpclett.7b00967
Frederix, P. W. J. M., Idé, J., Altay, Y., Schaeffer, G., Surin, M., Beljonne, D., ... Marrink, S. J. (2017). Structural and Spectroscopic Properties of Assemblies of Self-Replicating Peptide Macrocycles. Acs Nano, 11(8), 7858-7868. https://doi.org/10.1021/acsnano.7b02211
Johnson, P. J. M., Farag, M. H., Halpin, A., Morizumi, T., Prokhorenko, V. I., Knoester, J., ... Miller, R. J. D. (2017). The Primary Photochemistry of Vision Occurs at the Molecular Speed Limit. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 121(16), 4040-4047. https://doi.org/10.1021/acs.jpcb.7b02329
Tran, H., Cunha, A. V., Shephard, J. J., Shalit, A., Hamm, P., Jansen, T. L. C., & Salzmann, C. G. (2017). 2D IR spectroscopy of high-pressure phases of ice. Journal of Chemical Physics, 147(14), [144501 - 144511]. https://doi.org/10.1063/1.4993952

2016

Cunha, A. V., Bondarenko, A. S., & Jansen, T. L. C. (2016). Assessing Spectral Simulation Protocols for the Amide I Band of Proteins. Journal of Chemical Theory and Computation, 12(8), 3982-3992. https://doi.org/10.1021/acs.jctc.6b00420
Tempelaar, R., Koster, L. J. A., Havenith, R. W. A., Knoester, J., & Jansen, T. L. C. (2016). Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials. The Journal of Physical Chemistry Letters, 7(1), 198-203. https://doi.org/10.1021/acs.jpclett.5b02580
Tempelaar, R., Koster, J. A., Havenith, R., Knoester, J., & Jansen, T. (2016). Charge recombination suppressed by destructive quantum interference in heterojunction materials. Abstracts of Papers of the American Chemical Society, 252.
Tempelaar, R., Koster, L. J. A., Havenith, R. W. A., Knoester, J., & Jansen, T. L. C. (2016). Correction to “Charge Recombination Suppressed by Destructive Quantum Interference in Heterojunction Materials”. The Journal of Physical Chemistry Letters, 7(18), 3659-3659. https://doi.org/10.1021/acs.jpclett.6b01956
Tempelaar, R., Halpin, A., Johnson, P. J. M., Cai, J., Murphy, R. S., Knoester, J., ... Jansen, T. L. C. (2016). Laser-Limited Signatures of Quantum Coherence. The Journal of Physical Chemistry. A: Molecules, Spectroscopy, Kinetics, Environment, & General Theory, 120(19), 3042-3048. https://doi.org/10.1021/acs.jpca.5b10312
Farag, M. H., Jansen, T. L. C., & Knoester, J. (2016). Probing the Interstate Coupling near a Conical Intersection by Optical Spectroscopy. The Journal of Physical Chemistry Letters, 7(17), 3328-3334. https://doi.org/10.1021/acs.jpclett.6b01463
Shi, L., Skinner, J. L., & Jansen, T. L. C. (2016). Two-dimensional infrared spectroscopy of neat ice I-h. PPCP : Physical Chemistry Chemical Physics, 18(5), 3772-3779. https://doi.org/10.1039/c5cp07264f

2015

Bondarenko, A. S., & Jansen, T. L. C. (2015). Application of two-dimensional infrared spectroscopy to benchmark models for the amide I band of proteins. Journal of Chemical Physics, 142(21), [212437]. https://doi.org/10.1063/1.4919716
van der Vegte, N., Prajapati, J., Kleinekathoefer, U., Knoester, J., & Jansen, T. (2015). Atomistic Modeling of Two-Dimensional Electronic Spectra and Excited State Dynamics for a Light Harvesting 2 Complex. The Journal of Physical Chemistry B, 119(4), 1302–1313. https://doi.org/10.1021/jp509247p
Hestand, N. J., Tempelaar, R., Knoester, J., Jansen, T. L. C., & Spano, F. C. (2015). Exciton mobility control through sub-angstrom packing modifications in molecular crystals. Physical Review. B: Condensed Matter and Materials Physics, 91(19), [195315]. https://doi.org/10.1103/PhysRevB.91.195315
Shinokita, K., Cunha, A. V., Jansen, T. L. C., & Pshenichnikov, M. S. (2015). Hydrogen bond dynamics in alcohols studied by 2D IR spectroscopy. In Ultrafast Phenomena XIX - Proceedings of the 19th International Conference (Vol. 162, pp. 466-470). (Springer Proceedings in Physics; Vol. 462). Springer Science and Business Media, LLC. https://doi.org/10.1007/978-3-319-13242-6_114
Shinokita, K., Cunha, A. V., Jansen, T. L. C., & Pshenichnikov, M. S. (2015). Hydrogen bond dynamics in bulk alcohols. Journal of Chemical Physics, 142(21), [212450]. https://doi.org/10.1063/1.4921574
Bakulin, A. A., Selig, O., Bakker, H. J., Rezus, Y. L. A., Mueller, C., Glaser, T., ... Jansen, T. L. C. (2015). Real-Time Observation of Organic Cation Reorientation in Methylammonium Lead Iodide Perovskites. The Journal of Physical Chemistry Letters, 6(18), 3663-3669. https://doi.org/10.1021/acs.jpclett.5b01555
Kruiger, J. F., van der Vegte, C. P., & Jansen, T. (2015). Suppressing sampling noise in linear and two-dimensional spectral simulations. Journal of Chemical Physics, 142(5), [054201]. https://doi.org/10.1063/1.4907277

2014

Jansen, T. L. C. (2014). Linear Absorption and Two-Dimensional Infrared Spectra of N-Methylacetamide in Chloroform Revisited: Polarizability and Multipole Effects. The Journal of Physical Chemistry B, 118(28), 8162-8169. https://doi.org/10.1021/jp5012445
Tempelaar, R., Spano, F. C., Knoester, J., & Jansen, T. L. C. (2014). Mapping the Evolution of Spatial Exciton Coherence through Time-Resolved Fluorescence. The Journal of Physical Chemistry Letters, 5(9), 1505-1510. https://doi.org/10.1021/jz500488u
van der Vegte, C. P., Knop, S., Voehringer, P., Knoester, J., & Jansen, T. L. C. (2014). OH-Stretching in Synthetic Hydrogen-Bonded Chains. The Journal of Physical Chemistry B, 118(23), 6256-6264. https://doi.org/10.1021/jp504267h
Halpin, A., Johnson, P. J. M., Tempelaar, R., Murphy, R. S., Knoester, J., Jansen, T. L. C., & Miller, R. J. D. (2014). Two-dimensional spectroscopy of a molecular dimer unveils the effects of vibronic coupling on exciton coherences. Nature Chemistry, 6(3), 196-201. https://doi.org/10.1038/NCHEM.1834
Tempelaar, R., Jansen, T. L. C., & Knoester, J. (2014). Vibrational Beatings Conceal Evidence of Electronic Coherence in the FMO Light-Harvesting Complex. The Journal of Physical Chemistry B, 118(45), 12865-12872. https://doi.org/10.1021/jp510074q

2013

van der Vegte, C. P., Dijkstra, A. G., Knoester, J., & Jansen, T. L. C. (2013). Calculating Two-Dimensional Spectra with the Mixed Quantum-Classical Ehrenfest Method. The Journal of Physical Chemistry A, 117(29), 5970-5980. https://doi.org/10.1021/jp311668r
Bakulin, A. A., Cringus, D., Pieniazek, P. A., Skinner, J. L., Jansen, T. L. C., & Pshenichnikov, M. S. (2013). Dynamics of Water Confined in Reversed Micelles: Multidimensional Vibrational Spectroscopy Study. Journal of Physical Chemistry B, 117(49), 15545-15558. https://doi.org/10.1021/jp405853j
Liang, C., & Jansen, T. L. C. (2013). Simulation of Two-Dimensional Sum-Frequency Generation Response Functions: Application to Amide I in Proteins. Journal of Physical Chemistry B, 117(23), 6937-6945. https://doi.org/10.1021/jp403111j
Tempelaar, R., van der Vegte, C. P., Knoester, J., & Jansen, T. L. C. (2013). Surface hopping modeling of two-dimensional spectra. Journal of Chemical Physics, 138(16), 164106-1-164106-10. [164106]. https://doi.org/10.1063/1.4801519
Liang, C., Louhivuori, M., Marrink, S. J., Jansen, T. L. C., & Knoester, J. (2013). Vibrational Spectra of a Mechanosensitive Channel. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 4(3), 448-452. https://doi.org/10.1021/jz3019258

2012

Liang, C., & Jansen, T. L. C. (2012). An Efficient N-3-Scaling Propagation Scheme for Simulating Two-Dimensional Infrared and Visible Spectra. Journal of Chemical Theory and Computation, 8(5), 1706-1713. https://doi.org/10.1021/ct300045c
Jansen, T. L. C., Dijkstra, A. G., Watson, T. M., Hirst, J. D., & Knoester, J. (2012). Erratum: “Modeling the amide I bands of small peptides” [J. Chem. Phys. 125, 044312 (2006)]. Journal of Chemical Physics, 136(20), [209901]. https://doi.org/10.1063/1.4722584
Lessing, J., Roy, S., Reppert, M., Baer, M., Marx, D., Jansen, T. L. C., ... Tokmakoff, A. (2012). Identifying Residual Structure in Intrinsically Disordered Systems: A 2D IR Spectroscopic Study of the GVGXPGVG Peptide. Journal of the American Chemical Society, 134(11), 5032-5035. https://doi.org/10.1021/ja2114135
Liang, C., Knoester, J., & Jansen, T. L. C. (2012). Proton Transport in a Membrane Protein Channel: Two-Dimensional Infrared Spectrum Modeling. Journal of Physical Chemistry B, 116(22), 6336-6345. https://doi.org/10.1021/jp3019827

2011

Roy, S., Pshenichnikov, M. S., & Jansen, T. L. C. (2011). Analysis of 2D CS Spectra for Systems with Non-Gaussian Dynamics. Journal of Physical Chemistry B, 115(18), 5431-5440. https://doi.org/10.1021/jp109742p
Olbrich, C., Jansen, T. L. C., Liebers, J., Aghtar, M., Struempfer, J., Schulten, K., ... Strümpfer, J. (2011). From Atomistic Modeling to Excitation Transfer and Two-Dimensional Spectra of the FMO Light-Harvesting Complex. Journal of Physical Chemistry B, 115(26), 8609-8621. https://doi.org/10.1021/jp202619a
Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2011). Modeling the Vibrational Dynamics and Nonlinear Infrared Spectra of Coupled Amide I and II Modes in Peptides. Journal of Physical Chemistry B, 115(18), 5392-5401. https://doi.org/10.1021/jp109431a
Knop, S., Jansen, T. L. C., Lindner, J., & Voehringer, P. (2011). On the nature of OH-stretching vibrations in hydrogen-bonded chains: Pump frequency dependent vibrational lifetime. Physical Chemistry Chemical Physics, 13(10), 4641-4650. https://doi.org/10.1039/c0cp02143a
Liang, C., & Jansen, T. L. C. (2011). Proton transport in a binary biomimetic solution revealed by molecular dynamics simulation. Journal of Chemical Physics, 135(11), [114502]. https://doi.org/10.1063/1.3636381
Liang, C., Jansen, T. L. C., & Knoester, J. (2011). Proton transport in biological systems can be probed by two-dimensional infrared spectroscopy. Journal of Chemical Physics, 134(4), 044502-1-044502-8. [044502]. https://doi.org/10.1063/1.3522770
Roy, S., Lessing, J., Meisl, G., Ganim, Z., Tokmakoff, A., Knoester, J., & Jansen, T. L. C. (2011). Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline. Journal of Chemical Physics, 135(23), 234507-1-234507-11. [234507]. https://doi.org/10.1063/1.3665417

2010

Smith, A. W., Lessing, J., Ganim, Z., Peng, C. S., Tokmakoff, A., Roy, S., ... Knoester, J. (2010). Melting of a beta-Hairpin Peptide Using Isotope-Edited 2D IR Spectroscopy and Simulations. Journal of Physical Chemistry B, 114(34), 10913-10924. https://doi.org/10.1021/jp104017h
Roy, S., Jansen, T. L. C., & Knoester, J. (2010). Structural classification of the amide I sites of a beta-hairpin with isotope label 2DIR spectroscopy. Physical Chemistry Chemical Physics, 12(32), 9347-9357. https://doi.org/10.1039/b925645h
Jansen, T. L. C., Auer, B. M., Yang, M., & Skinner, J. L. (2010). Two-dimensional infrared spectroscopy and ultrafast anisotropy decay of water. Journal of Chemical Physics, 132(22), [224503]. https://doi.org/10.1063/1.3454733
Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2010). Two-Dimensional Spectroscopy of Extended Molecular Systems: Applications to Energy Transport and Relaxation in an alpha-Helix. The Journal of Physical Chemistry A, 114(27), 7315-7320. https://doi.org/10.1021/jp9111124

2009

Jansen, T. L. C., Cringus, D., & Pshenichnikov, M. S. (2009). Dissimilar Dynamics of Coupled Water Vibrations. The Journal of Physical Chemistry A, 113(22), 6260-6265. https://doi.org/10.1021/jp900480r
Cringus, D., Jansen, T. I. C., Pshenichnikov, M. S., & Schoenlein, RW. (2009). Heterogeneous Dynamics of Coupled Vibrations. In P. Corkum, S. DeSilvestri, KA. Nelson, E. Riedle, & R. W. Schoenlein (Eds.), Ultrafast Phenomena XVI: Proceedings of the 16th International Conference (Vol. 92, pp. 472-474). (Springer Series in Chemical Physics; Vol. 92). Stresa, Italy: Springer.
Bakulin, A. A., Liang, C., Jansen, T. L. C., Wiersma, D. A., Bakker, H. J., & Pshenichnikov, M. S. (2009). Hydrophobic Solvation: A 2D IR Spectroscopic Inquest. Accounts of Chemical Research, 42(9), 1229-1238. https://doi.org/10.1021/ar9000247
Jansen, T. L. C., & Knoester, J. (2009). Waiting Time Dynamics in Two-Dimensional Infrared Spectroscopy. Accounts of Chemical Research, 42(9), 1405-1411. https://doi.org/10.1021/ar900025a

2008

Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2008). Localization and coherent dynamics of excitons in the two-dimensional optical spectrum of molecular J-aggregates. Journal of Chemical Physics, 128(16), [164511]. https://doi.org/10.1063/1.2897753
Jansen, T. L. C., & Ruszel, W. M. (2008). Motional narrowing in the time-averaging approximation for simulating two-dimensional nonlinear infrared spectra. Journal of Chemical Physics, 128(21), [214501]. https://doi.org/10.1063/1.2931941
Bloem, R., Dijkstra, A. G., Jansen, T. L. C., & Knoester, J. (2008). Simulation of vibrational energy transfer in two-dimensional infrared spectroscopy of amide I and amide II modes in solution. Journal of Chemical Physics, 129(5), [055101]. https://doi.org/10.1063/1.2961020
Jansen, T. L. C., & Knoester, J. (2008). Two-dimensional infrared population transfer spectroscopy for enhancing structural markers of proteins. Biophysical Journal, 94(5), 1818-1825. https://doi.org/10.1529/biophysj.107.118851

2007

Jansen, T. L. C., & Knoester, J. (2007). Calculation of two-dimensional infrared spectra of ultrafast chemical exchange with numerical Langevin simulations. Journal of Chemical Physics, 127(23), [234502]. https://doi.org/10.1063/1.2806179
Cringus, D., Jansen, T. L. C., Pshenichnikov, M. S., & Wiersma, D. A. (2007). Ultrafast anisotropy dynamics of water molecules dissolved in acetonitrile. Journal of Chemical Physics, 127(8), [084507]. https://doi.org/10.1063/1.2771178
Cringus, D., Jansen, T. L. C., Pshenichnikov, M. S., & Wiersma, D. A. (2007). Ultrafast intramolecular energy transfer in water. In P. Corkum, D. M. Jonas, R. J. D. Miller, & A. M. Weiner (Eds.), Ultrafast Phenomena XV, Proceedings of the 15th International Conference (88 ed., pp. 439-441). (SPRINGER SERIES IN CHEMICAL PHYSICS; Vol. 88). BERLIN: Springer.
Dijkstra, A. G., Jansen, T. L. C., Bloem, R., & Knoester, J. (2007). Vibrational relaxation in simulated two-dimensional infrared spectra of two amide modes in solution. Journal of Chemical Physics, 127(19), [194505]. https://doi.org/10.1063/1.2786455

2006

Jansen, T. L. C., & Knoester, J. (2006). A transferable electrostatic map for solvation effects on amide I vibrations and its application to linear and two-dimensional spectroscopy. Journal of Chemical Physics, 124(4), art. - 044502. [044502]. https://doi.org/10.1063/1.2148409
Milne, C. J., Li, Y. L., Jansen, T. L. C., Huang, L., & Miller, R. J. D. (2006). Fifth-order Raman spectroscopy of liquid benzene: Experiment and theory. Journal of Physical Chemistry B, 110(40), 19867-19876. https://doi.org/10.1021/jp062063v
Jansen, T. L. C., Dijkstra, A. G., Watson, T. M., Hirst, J. D., & Knoester, J. (2006). Modeling the amide I bands of small peptides. Journal of Chemical Physics, 125(4), art. - 044312. [044312]. https://doi.org/10.1063/1.2218516
la Cour Jansen, T., & Knoester, J. (2006). Nonadiabatic effects in the two-dimensional infrared spectra of peptides: Application to alanine dipeptide. Journal of Physical Chemistry B, 110(45), 22910-22916. https://doi.org/10.1021/jp064795t
la Cour Jansen, T., & Knoester, J. (2006). Simulation of two-dimensional infrared spectra by numerical integration of the Schrödinger equation. In Host Publication (Vol. 7B, pp. 1218). Leiden: Martinus Nijhoff/Brill.
Jansen, T. L. C., & Knoester, J. (2006). Simulation of two-dimensional infrared spectra by numerical integration of the schrodinger equation. In T. Simos, & G. Maroulis (Eds.), RECENT PROGRESS IN COMPUTATIONAL SCIENCES AND ENGINEERING, VOLS 7A AND 7B (pp. 1218-1221). (LECTURE SERIES ON COMPUTER AND COMPUTATIONAL SCIENCES; Vol. 7A-B). LEIDEN: VSP BV-C/O BRILL ACAD PUBL.
DeVane, R., Space, B., Jansen, T. L. C., & Keyes, T. (2006). Time correlation function and finite field approaches to the calculation of the fifth order Raman response in liquid xenon. Journal of Chemical Physics, 125(23), 234501-1 - 234501-5. [234501]. https://doi.org/10.1063/1.2403129

2005

Hayashi, T., Jansen, TL., Zhuang, W., & Mukamel, S. (2005). Collective solvent coordinates for the infrared spectrum of HOD in D2O based on an ab initio electrostatic map. The Journal of Physical Chemistry A, 109(1), 64-82. https://doi.org/10.1021/jp046685x
Jansen, T. L., Hayashi, T., Zhuang, W., & Mukamel, S. (2005). Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water. Journal of Chemical Physics, 123(11), art. - 114504. [114504]. https://doi.org/10.1063/1.2008251

2004

Jansen, T. L. C., Zhuang, W., & Mukamel, S. (2004). Stochastic Liouville equation simulation of multidimensional vibrational line shapes of trialanine. Journal of Chemical Physics, 121(21), 10577-10598. https://doi.org/10.1063/1.1807824
Mukamel, S., Abramavicius, D., Hayashi, T., Zhuang, W., Moran, AM., Jansen, TIC., & Venkatramani, R. (2004). Structure, dynamics, and hydrogen bonding fluctuations of peptides probed by coherent infrared multidimensional spectra. Abstracts of Papers of the American Chemical Society, 227, U279.

2003

Jansen, TLC., Duppen, K., & Snijders, J. (2003). Close collisions in the two-dimensional Raman response of liquid carbon disulfide. Physical Review. B: Condensed Matter and Materials Physics, 67(13), art - 134206. [134206]. https://doi.org/10.1103/PhysRevB.67.134206
la Cour Jansen, T., & Mukamel, S. (2003). Semiclassical mode-coupling factorizations of coherent nonlinear optical response. Journal of Chemical Physics, 119(15), 7979-7987. https://doi.org/10.1063/1.1610437
la Cour Jansen, T., Duppen, K., & Snijders, J. G. (2003). The effect of induced multipoles on the fifth-order Raman response. Bulletin of the Korean Chemical Society, 24(8), 1102-1106.
la Cour Jansen, T., Duppen, K., & Snijders, J. G. (2003). The finite field approach to the third- and fifth-order Raman response of liquids. In Nonlinear optical responses of molecules, solids and liquids : methods and applications (pp. 151 - 178). Trivandrum, India: Research Signpost.

2002

Jansen, T. I. C., Swart, M., Jensen, L., van Duijnen, P. T., Snijders, J. G., & Duppen, K. (2002). Collision effects in the nonlinear Raman response of liquid carbon disulfide. Journal of Chemical Physics, 116(8), 3277-3285. https://doi.org/10.1063/1.1436463
Boeijenga, N. H., Pugzlys, A., la Cour Jansen, T., Snijders, J. G., & Duppen, K. (2002). Liquid xenon as an ideal probe for many-body effects in impulsive Raman scattering. Journal of Chemical Physics, 117(3), 1181 - 1187. https://doi.org/10.1063/1.1483862
la Cour Jansen, T., Pugzlys, A., Cringus, G. D., Snijders, J. G., & Duppen, K. (2002). Many-body effects in the stimulated Raman response of binary mixtures: A comparison between theory and experiment. Journal of Chemical Physics, 116(21), 9383 - 9391. https://doi.org/10.1063/1.1475763

2001

la Cour Jansen, T., Snijders, J. G., & Duppen, K. (2001). Interaction induced effects in the nonlinear Raman response of liquid CS2: A finite field nonequilibrium molecular dynamics approach. Journal of Chemical Physics, 114(24), 10910 - 10921. https://doi.org/10.1063/1.1374959

2000

la Cour Jansen, T., Snijders, J. G., & Duppen, K. (2000). The third- and fifth-order nonlinear Raman response of liquid CS2 calculated using a finite field nonequilibrium molecular dynamics method. Journal of Chemical Physics, 113(1), 307 - 311. [PII [S0021-9606(00)50223-2]]. https://doi.org/10.1063/1.481795

1999

Jansen, T. L. C., Rettrup, S., Sarma, C. R., Snijders, J., & Palmieri, P. (1999). On the evaluation of spin-orbit coupling matrix elements in a spin-adapted basis. International Journal of Quantum Chemistry, 73(1), 23 - 27.
Last modified:23 March 2019 2.17 p.m.