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Research Molecular Immunology

Publications overview

Publications

2023

Maassen, S., Coenen, B., Dulk, S., van der Werff, M., Warner, H., Spada, F., Frischmuth, T., Incarnato, D., & van den Bogaart, G. (2023). 5-Ethynyluridine: A Bio-orthogonal Uridine Variant for mRNA-Based Therapies and Vaccines. ChemBioChem, 24, [202200658]. https://doi.org/10.1002/cbic.202200658
Stempels, F. C., Jiang, M., Warner, H. M., Moser, M-L., Janssens, M. H., Maassen, S., Nelen, I. H., de Boer, R., Jiemy, W. F., Knight, D., Selley, J., O'Cualain, R., Baranov, M. V., Burgers, T. C. Q., Sansevrino, R., Milovanovic, D., Heeringa, P., Jones, M. C., Vlijm, R., ... van den Bogaart, G. (2023). Giant worm-shaped ESCRT scaffolds surround actin-independent integrin clusters. The Journal of Cell Biology, 222(7), [202205130]. https://doi.org/10.1083/jcb.202205130
Maassen, S., Coenen, B., Ioannidis, M., Harber, K., Grijpstra, P., Van den Bossche, J., & van den Bogaart, G. (2023). Itaconate promotes a wound resolving phenotype in pro-inflammatory macrophages. Redox Biology, 59, [102591]. https://doi.org/10.1016/j.redox.2022.102591
van der Borg, G., Warner, H., Ioannidis, M., van den Bogaart, G., & Roos, W. H. (2023). PLA 3D Printing as a Straightforward and Versatile Fabrication Method for PDMS Molds. Polymers, 15(6), [1498]. https://doi.org/10.3390/polym15061498

2022

Stempels, F. C., de Wit, A. S., Swierstra, M. S., Maassen, S., Bianchi, F., van den Bogaart, G., & Baranov, M. V. (2022). A sensitive and less cytotoxic assay for identification of proliferating T cells based on bioorthogonally-functionalized uridine analogue. Journal of Immunological Methods, 502, [113228]. https://doi.org/10.1016/j.jim.2022.113228
Kumar, M., Singh, A., Del Secco, B., Baranov, M. V., van den Bogaart, G., Sacanna, S., & Thutupalli, S. (2022). Assembling anisotropic colloids using curvature-mediated lipid sorting. Soft Matter, 18(9), 1757-1766. https://doi.org/10.1039/d1sm01517f
Bandyopadhyay, G., Tang, K., Webster, N. J. G., van den Bogaart, G., & Mahata, S. K. (2022). Catestatin induces glycogenesis by stimulating the phosphoinositide 3-kinase-AKT pathway. Acta physiologica, 235(1), [e13775]. https://doi.org/10.1111/apha.13775
Dabral, D., & van den Bogaart, G. (2022). Focal exocytosis of Syntaxin 3 and TRPML1 at pseudopodia of nascent phagosomes. BioRxiv. https://doi.org/10.1101/2022.08.22.504747
Liu, M. A., Shahabi, S., Jati, S., Tang, K., Gao, H., Jin, Z., Miller, W., Meunier, F. A., Ying, W., van den Bogaart, G., Ghosh, G., & Mahata, S. K. (2022). Gut microbial DNA and immune checkpoint gene Vsig4/CRIg are key antagonistic players in healthy aging and age-associated development of hypertension and diabetes. Frontiers in endocrinology, 13, [1037465]. https://doi.org/10.3389/fendo.2022.1037465
Dabral, D., Ghosh, H., Niwa, M., Hirayama, T., de Vos, M., & van den Bogaart, G. (2022). Iron regulates contrasting toxicity of uropathogenic Eschericia coli in macrophages and epithelial cells. (BioRxiv). BioRxiv. https://doi.org/10.1101/2022.05.29.493834
Baranov, M. V., Ioannidis, M., Balahsioui, S., Boersma, A., de Boer, R., Kumar, M., Niwa, M., Hirayama, T., Zhou, Q., Hopkins, T. M., Grijpstra, P., Thutupalli, S., Sacanna, S., & van den Bogaart, G. (2022). Irregular particle morphology and membrane rupture facilitate ion gradients in the lumen of phagosomes. Biophysical Reports, 2(3), [100069]. https://doi.org/10.1016/j.bpr.2022.100069
Maassen, S., Warner, H., Ioannidis, M., Jansma, J., Markus, H., El Aidy, S., Chiara, M-D., Chiara, J. L., Maierhofer, L., Weavers, H., & van den Bogaart, G. (2022). Mitochondrial interaction of fibrosis-protective 5-methoxy tryptophan enhances collagen uptake by macrophages. Free Radical Biology and Medicine, 188, 287-297. [202206235]. https://doi.org/10.1016/j.freeradbiomed.2022.06.235
Stempels, F. C., Janssens, M. H., Ter Beest, M., Mesman, R. J., Revelo, N. H., Ioannidis, M., & van den Bogaart, G. (2022). Novel and conventional inhibitors of canonical autophagy differently affect LC3-associated phagocytosis. FEBS Letters, 596(4), 491-509. [14280]. https://doi.org/10.1002/1873-3468.14280
Warner, H., Mahajan, S., & van den Bogaart, G. (2022). Rerouting trafficking circuits through posttranslational SNARE modifications. Journal of Cell Science, 135(16), [260112]. https://doi.org/10.1242/jcs.260112
Bazioti, V., La Rose, A. M., Maassen, S., Bianchi, F., de Boer, R., Halmos, B., Dabral, D., Guilbaud, E., Flohr-Svendsen, A., Groenen, A. G., Marmolejo-Garza, A., Koster, M. H., Kloosterhuis, N. J., Havinga, R., Pranger, A. T., Langelaar-Makkinje, M., de Bruin, A., van de Sluis, B., Kohan, A. B., ... Westerterp, M. (2022). T cell cholesterol efflux suppresses apoptosis and senescence and increases atherosclerosis in middle aged mice. Nature Communications, 13(1), [3799]. https://doi.org/10.1038/s41467-022-31135-4
Ioannidis, M., Mahata, S. K., & van den Bogaart, G. (2022). The immunomodulatory functions of Chromogranin A-derived peptide Pancreastatin. Peptides, 158, [170893]. https://doi.org/10.1016/j.peptides.2022.170893
Bilderbeek, R. J. C., Baranov, M. V., van den Bogaart, G., & Bianchi, F. (2022). Transmembrane Helices Are an Over-Presented and Evolutionarily Conserved Source of Major Histocompatibility Complex Class I and II Epitopes. Frontiers in Immunology, 12, [763044]. https://doi.org/10.3389/fimmu.2021.763044

2021

Linders, P. T. A., Ioannidis, M., Ter Beest, M., & van den Bogaart, G. (2022). Fluorescence Lifetime Imaging of pH along the Secretory Pathway. ACS chemical biology, 17(1), 240-251. https://doi.org/10.1021/acschembio.1c00907
Ottria, A., Zimmermann, M., Paardekooper, L. M., Carvalheiro, T., Vazirpanah, N., Silva-Cardoso, S., Affandi, A. J., Chouri, E., V D Kroef, M., Tieland, R. G., Bekker, C. P. J., Wichers, C. G. K., Rossato, M., Mocholi-Gimeno, E., Tekstra, J., Ton, E., van Laar, J. M., Cossu, M., Beretta, L., ... Marut, W. (2022). Hypoxia and TLR9 activation drive CXCL4 production in systemic sclerosis plasmacytoid dendritic cells via mtROS and HIF-2α. Rheumatology, 61(6), 2682-2693. [keab532]. https://doi.org/10.1093/rheumatology/keab532
Muntjewerff, E. M., Christoffersson, G., Mahata, S. K., & van den Bogaart, G. (2022). Putative regulation of macrophage-mediated inflammation by catestatin. TRENDS IN IMMUNOLOGY, 43(1), 41-50. https://doi.org/10.1016/j.it.2021.11.002
Nie, L., Nusantara, A. C., Damle, V. G., Baranov, M. V., Chipaux, M., Reyes-San-Martin, C., Hamoh, T., Epperla, C. P., Guricova, M., Cigler, P., Van Den Bogaart, G., & Schirhagl, R. (2022). Quantum Sensing of Free Radicals in Primary Human Dendritic Cells. Nano Letters, 22(4), 1818-1825. https://doi.org/10.1021/acs.nanolett.1c03021
Muntjewerff, E. M., Parv, K., Mahata, S. K., van Riessen, N. K., Phillipson, M., Christoffersson, G., & van den Bogaart, G. (2022). The anti-inflammatory peptide Catestatin blocks chemotaxis. Journal of Leukocyte Biology, 112(2), 273-278. https://doi.org/10.1002/JLB.3CRA1220-790RR
Iyer, A., Baranov, M., Foster, A. J., Chordia, S., Roelfes, G., Vlijm, R., van den Bogaart, G., & Poolman, B. (2021). Chemogenetic Tags with Probe Exchange for Live-Cell Fluorescence Microscopy. ACS chemical biology, 16(5), 891-904. [acschembio.1c00100]. https://doi.org/10.1021/acschembio.1c00100
Muntjewerff, E. M., Tang, K., Lutter, L., Christoffersson, G., Nicolasen, M. J. T., Gao, H., Katkar, G. D., Das, S., Ter Beest, M., Ying, W., Ghosh, P., Aidy, S. E., Oldenburg, B., van den Bogaart, G., & Mahata, S. K. (2021). Chromogranin A regulates gut permeability via the antagonistic actions of its proteolytic peptides. Acta physiologica, 232(2), [e13655]. https://doi.org/10.1111/apha.13655
Linders, P. T. A., Gerretsen, E. C. F., Ashikov, A., Vals, M-A., de Boer, R., Revelo, N. H., Arts, R., Baerenfaenger, M., Zijlstra, F., Huijben, K., Raymond, K., Muru, K., Fjodorova, O., Pajusalu, S., Õunap, K., Ter Beest, M., Lefeber, D., & van den Bogaart, G. (2021). Congenital disorder of glycosylation caused by starting site-specific variant in syntaxin-5. Nature Communications, 12(1), [6227]. https://doi.org/10.1038/s41467-021-26534-y
Capelluto, D. G. S., Conde, C. B., Tumbarello, D. A., & van den Bogaart, G. (2021). Editorial: Signaling Proteins for Endosomal and Lysosomal Function. Frontiers in Cell and Developmental Biology, 9, [821719]. https://doi.org/10.3389/fcell.2021.821719
Ying, W., Tang, K., Avolio, E., Schilling, J. M., Pasqua, T., Liu, M. A., Cheng, H., Gao, H., Zhang, J., Mahata, S., Ko, M. S., Bandyopadhyay, G., Das, S., Roth, D. M., Sahoo, D., Webster, N. J. G., Sheikh, F., Ghosh, G., Patel, H. H., ... Mahata, S. K. (2021). Immunosuppression of Macrophages Underlies the Cardioprotective Effects of CST (Catestatin). Hypertension (Dallas, Tex. : 1979), 77(5), 1670-1682. https://doi.org/10.1161/HYPERTENSIONAHA.120.16809
Baranov, M. V., Kumar, M., Sacanna, S., Thutupalli, S., & van den Bogaart, G. (2021). Modulation of Immune Responses by Particle Size and Shape. Frontiers in Immunology, 11, [607945]. https://doi.org/10.3389/fimmu.2020.607945
Baranov, M. V., Bianchi, F., & van den Bogaart, G. (2021). The PIKfyve Inhibitor Apilimod: A Double-Edged Sword against COVID-19. Cells, 10(1), [30]. https://doi.org/10.3390/cells10010030
Dabral, D., & van den Bogaart, G. (2021). The Roles of Phospholipase A2 in Phagocytes. Frontiers in Cell and Developmental Biology, 9, [673502]. https://doi.org/10.3389/fcell.2021.673502
Altulea, D., Maassen, S., Baranov, M. V., & van den Bogaart, G. (2021). What makes (hydroxy)chloroquine ineffective against COVID-19: Insights from cell biology. Journal of Molecular Cell Biology, 13(3), 175–184. [mjab016]. https://doi.org/10.1093/jmcb/mjab016

2020

Muntjewerff, E. M., Meesters, L. D., & van den Bogaart, G. (2020). Antigen Cross-Presentation by Macrophages. Frontiers in Immunology, 11, [1276]. https://doi.org/10.3389/fimmu.2020.01276
Muntjewerff, E. M., Meesters, L. D., van den Bogaart, G., & Revelo, N. H. (2020). Reverse Signaling by MHC-I Molecules in Immune and Non-Immune Cell Types. Frontiers in Immunology, 11, [605958]. https://doi.org/10.3389/fimmu.2020.605958
Linders, P. T. A., Peters, E., ter Beest, M., Lefeber, D. J., & van den Bogaart, G. (2020). Sugary Logistics Gone Wrong: Membrane Trafficking and Congenital Disorders of Glycosylation. International Journal of Molecular Sciences, 21(13), 1-28. [4654]. https://doi.org/10.3390/ijms21134654
Bianchi, F., & van den Bogaart, G. (2020). Vacuolar escape of foodborne bacterial pathogens. Journal of Cell Science, 134(5), [jcs.247221]. https://doi.org/10.1242/jcs.247221

2019

Baranov, M. V., Olea, R. A., & van den Bogaart, G. (2019). Chasing Uptake: Super-Resolution Microscopy in Endocytosis and Phagocytosis. Trends in Cell Biology, 29(9), 727-739. https://doi.org/10.1016/j.tcb.2019.05.006
Paardekooper, L. M., Dingjan, I., Linders, P. T. A., Staal, A. H. J., Cristescu, S. M., Verberk, W. C. E. P., & van den Bogaart, G. (2019). Human Monocyte-Derived Dendritic Cells Produce Millimolar Concentrations of ROS in Phagosomes Per Second. Frontiers in Immunology, 10, [1216]. https://doi.org/10.3389/fimmu.2019.01216
Revelo, N. H., Ter Beest, M., & van den Bogaart, G. (2019). Membrane trafficking as an active regulator of constitutively secreted cytokines. Journal of Cell Science, 133(5), [234781]. https://doi.org/10.1242/jcs.234781
Paardekooper, L. M., Vos, W., & Van Den Bogaart, G. (2019). Oxygen in the tumor microenvironment: Effects on dendritic cell function. Oncotarget, 10(8), 883-896. https://doi.org/10.18632/oncotarget.26608
Paardekooper, L. M., van Vroonhoven, E., Ter Beest, M., & van den Bogaart, G. (2019). Radical Stress Is More Cytotoxic in the Nucleus than in Other Organelles. International Journal of Molecular Sciences, 20(17), [4147]. https://doi.org/10.3390/ijms20174147
Linders, P. T., Horst, C. V. D., Beest, M. T., & van den Bogaart, G. (2019). Stx5-Mediated ER-Golgi Transport in Mammals and Yeast. Cells, 8(8), [cells8080780]. https://doi.org/10.3390/cells8080780

2018

Sahu, B. S., Mahata, S., Bandyopadhyay, K., Mahata, M., Avolio, E., Pasqua, T., Sahu, C., Bandyopadhyay, G. K., Bartolomucci, A., Webster, N. J. G., Van Den Bogaart, G., Fischer-Colbrie, R., Corti, A., Eiden, L. E., & Mahata, S. K. (2019). Catestatin regulates vesicular quanta through modulation of cholinergic and peptidergic (PACAPergic) stimulation in PC12 cells. Cell and Tissue Research, 376(1), 51-70. https://doi.org/10.1007/s00441-018-2956-1
Verboogen, D. R. J., Revelo, N. H., Ter Beest, M., & van den Bogaart, G. (2019). Interleukin-6 secretion is limited by self-signaling in endosomes. The Journal of Cell Biology, 11(2), 144-157. https://doi.org/10.1093/jmcb/mjy038
Baranov, M. V., Bianchi, F., Schirmacher, A., van Aart, M. A. C., Maassen, S., Muntjewerff, E. M., Dingjan, I., Ter Beest, M., Verdoes, M., Keyser, S. G. L., Bertozzi, C. R., Diederichsen, U., & van den Bogaart, G. (2019). The Phosphoinositide Kinase PIKfyve Promotes Cathepsin-S-Mediated Major Histocompatibility Complex Class II Antigen Presentation. iScience , 11, 160-177. https://doi.org/10.1016/j.isci.2018.12.015
Muntjewerff, E. M., Revelo, N. H., & van den Bogaart, G. (2018). A positive feedback loop of IL-12 and IFN-gamma signaling potentiates both CD8+T cell and DC activation. European Journal of Immunology, 48, 179-180.
Muntjewerff, E. M., Dunkel, G., Nicolasen, M. J. T., Mahata, S. K., & van den Bogaart, G. (2018). Catestatin as a Target for Treatment of Inflammatory Diseases. Frontiers in Immunology, 9, [2199]. https://doi.org/10.3389/fimmu.2018.02199
Dingjan, I., Linders, P. T. A., Verboogen, D. R. J., Revelo, N. H., ter Beest, M., & van den Bogaart, G. (2018). ENDOSOMAL AND PHAGOSOMAL SNAREs. Physiological reviews, 98(3), 1465-1492. https://doi.org/10.1152/physrev.00037.2017
Paardekooper, L. M., Bendix, M. B., Ottria, A., de Haer, L. W., Ter Beest, M., Radstake, T. R., Marut, W., & van den Bogaart, G. (2018). Hypoxia potentiates monocyte-derived dendritic cells for release of tumor necrosis factor alpha via MAP3K8. Bioscience reports, 38(6), [BSR20182019]. https://doi.org/10.1042/BSR20182019
CDG Grp, Ashikov, A., Abu Bakar, N., Wen, X-Y., Niemeijer, M., Osorio, G. R. P., Brand-Arzamendi, K., Hasadsri, L., Hansikova, H., Raymond, K., Vicogne, D., Ondruskova, N., Simon, M. E. H., Pfundt, R., Timal, S., Beumers, R., Biot, C., Smeets, R., Kersten, M., ... Lefeber, D. J. (2018). Integrating glycomics and genomics uncovers SLC10A7 as essential factor for bone mineralization by regulating post-Golgi protein transport and glycosylation. Human Molecular Genetics, 27(17), 3029-3045. https://doi.org/10.1093/hmg/ddy213
Baranov, M., van Aart, M. A. C., Dingjan, I., ter Beest, M., & van den Bogaart, G. (2018). PIKfyve in phagosome maturation and antigen presentation. European Journal of Immunology, 48, 44-45.
van den Bogaart, G., Verboogen, D. R., & ter Beest, M. (2018). Quantitative Microscopy of SNARE Complexes in Live Cells. Biophysical Journal, 114(3), 9A-10A.
Verboogen, D. R. J., ter Beest, M., Honigmann, A., & van den Bogaart, G. (2018). Secretory vesicles of immune cells contain only a limited number of interleukin 6 molecules. FEBS Letters, 592(9), 1535-1544. https://doi.org/10.1002/1873-3468.13036
Baranov, M. V., Revelo, N. H., Verboogen, D. R. J., Ter Beest, M., & van den Bogaart, G. (2018). SWAP70 is a universal GEF-like adaptor for tethering actin to phagosomes. Small GTPases, 10(4), 311-322. https://doi.org/10.1080/21541248.2017.1328302
Bianchi, F., Textor, J., & van den Bogaart, G. (2018). Trans-membrane domains: an overlooked source of antigens. European Journal of Immunology, 48, 43-43.

2017

Paardekooper, L. M., van den Bogaart, G., Kox, M., Dingjan, I., Neerincx, A. H., Bendix, M. B., ter Beest, M., Harren, F. J. M., Risby, T., Pickkers, P., Marczin, N., & Cristescu, S. M. (2017). Ethylene, an early marker of systemic inflammation in humans. Scientific Reports, 7, [6889]. https://doi.org/10.1038/s41598-017-05930-9
Verboogen, D. R. J., Mancha, N. G., ter Beest, M., & van den Bogaart, G. (2017). Fluorescence Lifetime Imaging Microscopy reveals rerouting of SNARE trafficking driving dendritic cell activation. eLife, 6, [23525]. https://doi.org/10.7554/eLife.23525
Dingjan, I., Linders, P. T. A., van den Bekerom, L., Baranov, M. V., Halder, P., ter Beest, M., & van den Bogaart, G. (2017). Oxidized phagosomal NOX2 complex is replenished from lysosomes. Journal of Cell Science, 130(7), 1285-1298. https://doi.org/10.1242/jcs.196931
Zuidscherwoude, M., Dunlock, V-M. E., van den Bogaart, G., van Deventer, S. J., van der Schaaf, A., van Oostrum, J., Goedhart, J., 't Hout, J. I., Haemmerling, G. J., Tanaka, S., Nadler, A., Schultz, C., Wright, M. D., Adjobo-Hermans, M. J. W., & van Spriel, A. B. (2017). Tetraspanin microdomains control localized protein kinase C signaling in B cells. Science signaling, 10(478), [2755]. https://doi.org/10.1126/scisignal.aag2755
Bianchi, F., Textor, J., & van den Bogaart, G. (2017). Transmembrane Helices Are an Overlooked Source of Major Histocompatibility Complex Class I Epitopes. Frontiers in Immunology, 8, [1118]. https://doi.org/10.3389/fimmu.2017.01118
Dingjan, I., Paardekooper, L. M., Verboogen, D. R. J., von Mollard, G. F., ter Beest, M., & van den Bogaart, G. (2017). VAMP8-mediated NOX2 recruitment to endosomes is necessary for antigen release. European Journal of Cell Biology, 96(7), 705-714. https://doi.org/10.1016/j.ejcb.2017.06.007
Verboogen, D. R. J., Baranov, M. V., ter Beest, M., & van den Bogaart, G. (2017). Visualizing Intracellular SNARE Trafficking by Fluorescence Lifetime Imaging Microscopy. Journal of Visualized Experiments, (130), [56745]. https://doi.org/10.3791/56745

2016

Milovanovic, D., Platen, M., Junius, M., Diederichsen, U., Schaap, I. A. T., Honigmann, A., Jahn, R., & Van Den Bogaart, G. (2016). Calcium promotes the formation of syntaxin 1 mesoscale domains through phosphatidylinositol 4,5-bisphosphate. Journal of Biological Chemistry, 291(15), 7868-7876. https://doi.org/10.1074/jbc.M116.716225
Jansen, J. C., Cirak, S., Van Scherpenzeel, M., Timal, S., Reunert, J., Rust, S., Pérez, B., Vicogne, D., Krawitz, P., Wada, Y., Ashikov, A., Pérez-Cerdá, C., Medrano, C., Arnoldy, A., Hoischen, A., Huijben, K., Steenbergen, G., Quelhas, D., Diogo, L., ... Lefeber, D. J. (2016). CCDC115 Deficiency Causes a Disorder of Golgi Homeostasis with Abnormal Protein Glycosylation. American Journal of Human Genetics, 98(2), 310-321. https://doi.org/10.1016/j.ajhg.2015.12.010
Dingjan, I., Verboogen, D. R. J., Paardekooper, L. M., Revelo, N. H., Sittig, S. P., Visser, L. J., Von Mollard, G. F., Henriet, S. S. V., Figdor, C. G., Ter Beest, M., & Van Den Bogaart, G. (2016). Lipid peroxidation causes endosomal antigen release for cross-presentation. Scientific Reports, 6, [22064]. https://doi.org/10.1038/srep22064
Farsi, Z., Preobraschenski, J., Van Den Bogaart, G., Riedel, D., Jahn, R., & Woehler, A. (2016). Single-Vesicle imaging reveals different transport mechanisms between glutamatergic and GABAergic vesicles. Science, 351(6276), 981-984. https://doi.org/10.1126/science.aad8142
Baranov, M. V., Revelo, N. H., Dingjan, I., Maraspini, R., ter Beest, M., Honigmann, A., & van den Bogaart, G. (2016). SWAP70 Organizes the Actin Cytoskeleton and Is Essential for Phagocytosis. Cell reports, 17(6), 1518-1531. https://doi.org/10.1016/j.celrep.2016.10.021
Verboogen, D. R. J., Dingjan, I., Revelo, N. H., Visser, L. J., Ter Beest, M., & Van Den Bogaart, G. (2016). The dendritic cell side of the immunological synapse. BioMolecular Concepts, 7(1), 17-28. https://doi.org/10.1515/bmc-2015-0028
Jansen, J. C., Timal, S., Van Scherpenzeel, M., Michelakakis, H., Vicogne, D., Ashikov, A., Moraitou, M., Hoischen, A., Huijben, K., Steenbergen, G., Van Den Boogert, M. A. W., Porta, F., Calvo, P. L., Mavrikou, M., Cenacchi, G., Van Den Bogaart, G., Salomon, J., Holleboom, A. G., Rodenburg, R. J., ... Lefeber, D. J. (2016). TMEM199 Deficiency is a Disorder of Golgi Homeostasis Characterized by Elevated Aminotransferases, Alkaline Phosphatase, and Cholesterol and Abnormal Glycosylation. American Journal of Human Genetics, 98(2), 322-330. https://doi.org/10.1016/j.ajhg.2015.12.011

2015

van Spriel, A. B., van den Bogaart, G., & Cambi, A. (2015). Editorial: Membrane domains as new drug targets. Frontiers in Physiology, 6, 172. https://doi.org/10.3389/fphys.2015.00172
Milovanovic, D., Honigmann, A., Koike, S., Paehler, G., Junius, M., Muellar, S., Diederichsen, U., Janshoff, A., Grubmueller, H., Risselada, H. J., Eggeling, C., Hell, S. W., van den Bogaart, G., & Jahn, R. (2015). Hydrophobic mismatch sorts SNARE proteins into distinct membrane domains. Nature Communications, 6, [5984]. https://doi.org/10.1038/ncomms6984
Zuidscherwoude, M., Goettfert, F., Dunlock, V. M. E., Figdor, C. G., van den Bogaart, G., & van Spriel, A. B. (2015). The tetraspanin web revisited by super-resolution microscopy. Scientific Reports, 5, [srep12201]. https://doi.org/10.1038/srep12201

2014

van den Bogaart, G., & ter Beest, M. (2014). Domains of phosphoinositides in the plasma membrane. In A. Cambi, & D. S. Lidke (Eds.), Cell Membrane Nanodomains: from Biochemistry to Nanoscopy (1 ed., Vol. 1). CRC Press.
Baranov, M. V., ter Beest, M., Reinieren-Beeren, I., Cambi, A., Figdor, C. G., & van den Bogaart, G. (2014). Podosomes of dendritic cells facilitate antigen sampling. Journal of Cell Science, 127(5), 1052-1064. https://doi.org/10.1242/jcs.141226
Baranov, M. V., ter Beest, M., & van den Bogaart, G. (2014). Reaching for far-flung antigen: How solid-core podosomes of dendritic cells transform into protrusive structures. Communicative & Integrative Biology, 7(5), [ e9709611]. https://doi.org/10.4161/cib.29084

2013

van den Bogaart, G., Lang, T., & Jahn, R. (2013). Microdomains of SNARE proteins in the plasma membrane. Current topics in membranes, 72, 193-230. https://doi.org/10.1016/B978-0-12-417027-8.00006-4
Seidel, S. A. I., Dijkman, P. M., Lea, W. A., van den Bogaart, G., Jerabek-Willemsen, M., Lazic, A., Joseph, J. S., Srinivasan, P., Baaske, P., Simeonov, A., Katrich, I., Melo, F. A., Ladbury, J. E., Schreiber, G., Watts, A., Braun, D., & Duhr, S. (2013). Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions. Methods, 59(3), 301-315. https://doi.org/10.1016/j.ymeth.2012.12.005
van den Bogaart, G., Meinema, A. C., Krasnikov, V., Veenhoff, L. M., & Poolman, B. (2013). Nuclear transport factor directs localization of protein synthesis during mitosis (Corrigendum; vol 11, pg 350, 2009). Nature Cell Biology, 15(4), 441. https://doi.org/10.1038/ncb2728
Honigmann, A., van den Bogaart, G., Iraheta, E., Risselada, H. J., Milovanovic, D., Mueller, V., Muellar, S., Diederichsen, U., Fasshauser, D., Grubmueller, H., Hell, S. W., Eggeling, C., Kuehnel, K., & Jahn, R. (2013). Phosphatidylinositol 4,5-bisphosphate clusters act as molecular beacons for vesicle recruitment. Nature Structural & Molecular Biology, 20(6), 679-686. https://doi.org/10.1038/nsmb.257 0
Khuong, T. M., Habets, R. L. P., Kuenen, S., Jahn, R., van den Bogaart, G., & Verstreken, P. (2013). Synaptic PI(3,4,5)P3 is required for Syntaxin1A clustering and neurotransmitter release. Neuron, 77(6), 1097-1108. https://doi.org/10.1016/j.neuron.2013.01.025

2012

Vennekate, W., Schroeder, S., Lin, C. C., van den Bogaart, G., Grunwald, M., Jahn, R., & Walla, P. J. (2012). Cis- and trans-membrane interactions of synaptotagmin-1. Proceedings of the National Academy of Science of the United States of America, 109(27), 11037-11042. [pnas.1116326109]. https://doi.org/10.1073/pnas.1116326109
Park, Y., Hernandez, J. M., van den Bogaart, G., Ahmed, S., Riedel, D., & Jahn, R. (2012). Controlling synaptotagmin activity by electrostatic screening. Nature Structural & Molecular Biology, 19(10), 991-997. https://doi.org/10.1038/nsmb.237 5
Matta, B., Van Kolen, K., da Cunha, R., van den Bogaart, G., Mandemakers, W., Miskiewicz, K., de Bock, P-J., Morais, V. A., Vilain, S., Haddad, D., Delbroek, L., Swerts, J., Chavez-Gutierrez, L., Esposito, G., Daneels, G., Karran, E., Holt, M., Gevaert, K., Moechars, D. W., ... Verstreken, P. (2012). LRRK2 controls an EndoA phosphorylation cycle in synaptic endocytosis. Neuron, 75(6), 1008-1021. https://doi.org/10.1016/j.neuron.2012.08.022
van den Bogaart, G., Meyerberg, K., Diederichsen, U., & Jahn, R. (2012). Phosphatidylinositol 4,5-bisphosphate increases Ca2+ affinity of synaptotagmin-1 by 40-fold. The Journal of Biological Chemistry, 287(20), 16447-16453. https://doi.org/10.1074/jbc.M112.343418

2011

van den Bogaart, G., & Jahn, R. (2011). Counting the SNAREs needed for membrane fusion. Journal of Molecular Cell Biology, 3(4), 204-205. [jmcb/mjr004]. https://doi.org/10.1093/jmcb/mjr004
Mika, J. T., Krasnikov, V., Bogaart, G. V. D., Haan, F. D., & Poolman, B. (2011). Evaluation of Pulsed-FRAP and Conventional-FRAP for Determination of Protein Mobility in Prokaryotic Cells. PLoS ONE, 6(9), [25664]. https://doi.org/10.1371/journal.pone.0025664
van den Bogaart, G. (2011). Inside insight to membrane fusion. Proceedings of the National Academy of Science of the United States of America, 108(29), 11729-11730. [pnas.1108770108].
Meinema, A. C., Laba, J. K., Hapsari, R. A., Otten, R., Mulder, F. A. A., Kralt, A., van den Bogaart, G., Lusk, C. P., Poolman, B., & Veenhoff, L. M. (2011). Long Unfolded Linkers Facilitate Membrane Protein Import Through the Nuclear Pore Complex. Science, 333(6038), 90-93. https://doi.org/10.1126/science.1205741
van den Bogaart, G., Meyerberg, K., Risselada, J. H., Amin, H., Willig, K. I., Hubrich, B. E., Dier, M., Hell, S. W., Grubmueller, H., Diederichsen, U., & Jahn, R. (2011). Membrane protein sequestering by ionic protein-lipid interactions. Nature, 479(7374), 552-555. [nature10545]. https://doi.org/10.1038/nature10545
Kusters, I., van den Bogaart, G., Kedrov, A., Krasnikov, V., Fulyani, F., Poolman, B., & Driessen, A. J. M. (2011). Quaternary Structure of SecA in Solution and Bound to SecYEG Probed at the Single Molecule Level. Structure, 19(3), 430-439. https://doi.org/10.1016/j.str.2010.12.016
Meyerberg, K., Lygina, A. S., van den Bogaart, G., Jahn, R., & Diederichsen, U. (2011). SNARE derived peptide mimic inducing membrane fusion. Chemical Communications, 47(33), 9405-9407. https://doi.org/10.1039/c1cc12879e
van den Bogaart, G., Thutupalli, S., Risselada, J. H., Meyerberg, K., Holt, M., Riedel, D., Diederichsen, U., Herminghaus, S., Grubmueller, H., & Jahn, R. (2011). Synaptotagmin-1 may be a distance regulator acting upstream of SNARE nucleation. Nature Structural & Molecular Biology, 18(7), 805-812. https://doi.org/10.1038/nsmb.206 1

2010

Mika, J. T., van den Bogaart, G., Veenhoff, L., Krasnikov, V., & Poolman, B. (2010). Molecular sieving properties of the cytoplasm of Escherichia coli and consequences of osmotic stress. Molecular Microbiology, 77(1), 200-207. https://doi.org/10.1111/j.1365-2958.2010.07201.x
van den Bogaart, G., Holt, M. G., Bunt, G., Riedel, D., Wouters, F. S., & Jahn, R. (2010). One SNARE complex is sufficient for membrane fusion. Nature Structural & Molecular Biology, 17(3), 358-364. [nsmb.1748]. https://doi.org/10.1038/nsmb.1748
Kusters, I., Bogaart, G. V. D., de Wit, J., Krasnikov, V., Poolman, B., & Driessen, A. (2010). Purification and Functional Reconstitution of the Bacterial Protein Translocation Pore, the SecYEG Complex. In A. Economou (Ed.), Protein Secretion: Methods and Protocols (Vol. 619, pp. 131-143). Humana Press. https://doi.org/10.1007/978-1-60327-412-8_8

2009

Ramadurai, S., Holt, A., Krasnikov, V., van den Bogaart, G., Killian, J. A., & Poolman, B. (2009). Lateral Diffusion of Membrane Proteins. Journal of the American Chemical Society, 131(35), 12650-12656. https://doi.org/10.1021/ja902853g
Bogaart, G. V. D., Meinema, A. C., Krasnikov, V., Veenhoff, L. M., & Poolman, B. (2009). Nuclear transport factor directs localization of protein synthesis during mitosis. Nature Cell Biology, 11(3), 350-U269. https://doi.org/10.1038/ncb1844

2008

van den Bogaart, G., Kusters, I., Velasquez, J., Mika, J. T., Krasnikov, V., Driessen, A. J. M., & Poolman, B. (2008). Dual-color fluorescence-burst analysis to study pore formation and protein-protein interactions. Methods., 46(2), 123-130. https://doi.org/10.1016/j.ymeth.2008.06.016
van den Bogaart, G., Guzman, J. V., Mika, J. T., & Poolman, B. (2008). On the Mechanism of Pore Formation by Melittin. The Journal of Biological Chemistry, 283(49), 33854-33857. https://doi.org/10.1074/jbc.M805171200
Bogaart, G. V. D. (2008). On the mobility of biomolecules: a fluorescence microscopy approach. s.n.
Doeven, M. K., Bogaart, G. V. D., Krasnikov, V., & Poolman, B. (2008). Probing receptor-translocator interactions in the oligopeptide ABC transporter by fluorescence correlation spectroscopy. Biophysical Journal, 94(10), 3956-3965. https://doi.org/10.1529/biophysj.107.120964
Last modified:10 November 2021 2.37 p.m.