Publications overview

de Wit, A. S., Bianchi, F., & van den Bogaart, G. (2025). Antigen presentation of post-translationally modified peptides in major histocompatibility complexes. Immunology and Cell Biology, 103(2), 161-177. Article 12839. https://doi.org/10.1111/imcb.12839

Warner, H., Franciosa, G., van der Borg, G., Coenen, B., Faas, F., Koenig, C., de Boer, R., Classens, R., Maassen, S., Baranov, M. V., Mahajan, S., Dabral, D., Bianchi, F., van Hilten, N., Risselada, H. J., Roos, W. H., Olsen, J. V., Cano, L. Q., & van den Bogaart, G. (2024). Atypical cofilin signaling drives dendritic cell migration through the extracellular matrix via nuclear deformation. Cell reports, 43(3), Article 113866. https://doi.org/10.1016/j.celrep.2024.113866

Chirasani, V. R., Kal, S., Biswas, N., Mahata, S., Tang, K., Pasqua, T., Avolio, E., Jati, S., Bandyopadhyay, G., Head, B. P., Patel, H. H., van den Bogaart, G., Sahoo, D., Senapati, S., & Mahata, S. K. (2024). Catestatin improves heart metabolic flexibility by promoting mitochondrial structure and function. Manuscript submitted for publication. https://doi.org/10.1101/2024.12.29.630689

Zhang, Y., Sigaeva, A., Elías-Llumbet, A., Fan, S., Woudstra, W., de Boer, R., Escobar, E., Reyes-San-Martin, C., Kisabacak, R., Oosterhuis, D., Gorter, A. R., Coenen, B., Perona Martinez, F. P., van den Bogaart, G., Olinga, P., & Schirhagl, R. (2024). Free radical detection in precision-cut mouse liver slices with diamond-based quantum sensing. Proceedings of the National Academy of Sciences of the United States of America, 121(43), Article e2317921121. https://doi.org/10.1073/pnas.2317921121

Kopp, J., Jahn, D., Vogt, G., Psoma, A., Ratto, E., Morelle, W., Stelzer, N., Hausser, I., Hoffmann, A., de los Santos, M. R., Koch, L. A., Fischer-Zirnsak, B., Thiel, C., Palm, W., Meierhofer, D., van den Bogaart, G., Foulquier, F., Meinhardt, A., & Kornak, U. (2024). Golgi pH elevation due to loss of V-ATPase subunit V0a2 function correlates with tissue-specific glycosylation changes and globozoospermia. Cellular and molecular life sciences , 82(1), Article 4. https://doi.org/10.1007/s00018-024-05506-7

Marhaeny, H. D., Rohmah, L., Pratama, Y. A., Kasatu, S. M., Miatmoko, A., Addimaysqi, R., van den Bogaart, G., Ho, F. Y., Taher, M., & Khotib, J. (2024). Shrimp allergen extract immunotherapy induces prolonged immune tolerance in a gastro-food allergy mouse model. PLoS ONE, 19(12), Article e0315312. https://doi.org/10.1371/journal.pone.0315312

Monti, M., Milanetti, E., Frans, M. T., Miotto, M., Di Rienzo, L., Baranov, M. V., Gosti, G., Somavarapu, A. K., Nagaraj, M., Golbek, T. W., Rossing, E., Moons, S. J., Boltje, T. J., van den Bogaart, G., Weidner, T., Otzen, D. E., Tartaglia, G. G., Ruocco, G., & Roeters, S. J. (2024). Two Receptor Binding Strategy of SARS-CoV-2 Is Mediated by Both the N-Terminal and Receptor-Binding Spike Domain. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 128(2), 451-464. Article 3c06258. https://doi.org/10.1021/acs.jpcb.3c06258

Jiang, M., Karsenberg, R., Bianchi, F., & van den Bogaart, G. (2024). CD36 as a double-edged sword in cancer. Immunology Letters, 265, 7-15. https://doi.org/10.1016/j.imlet.2023.12.002

Maassen, S., Coenen, B., Dulk, S., van der Werff, M., Warner, H., Spada, F., Frischmuth, T., Incarnato, D., & van den Bogaart, G. (2023). 5-Ethynyluridine: A Bio-orthogonal Uridine Variant for mRNA-Based Therapies and Vaccines. ChemBioChem, 24, Article 202200658. https://doi.org/10.1002/cbic.202200658

Maassen, S., Warner, H. M., Grijpstra, P., & van den Bogaart, G. (2023). A quantitative in vitro collagen uptake assay. Methodsx, 11, Article 102288. https://doi.org/10.1016/j.mex.2023.102288

Stempels, F. C., Jiang, M., Warner, H. M., Moser, M.-L., Janssens, M. H., Maassen, S., Nelen, I. H., de Boer, R., Jiemy, W. F., Knight, D., Selley, J., O'Cualain, R., Baranov, M. V., Burgers, T. C. Q., Sansevrino, R., Milovanovic, D., Heeringa, P., Jones, M. C., Vlijm, R., ... van den Bogaart, G. (2023). Giant worm-shaped ESCRT scaffolds surround actin-independent integrin clusters. The Journal of Cell Biology, 222(7), Article 202205130. https://doi.org/10.1083/jcb.202205130

Maassen, S., Coenen, B., Ioannidis, M., Harber, K., Grijpstra, P., Van den Bossche, J., & van den Bogaart, G. (2023). Itaconate promotes a wound resolving phenotype in pro-inflammatory macrophages. Redox Biology, 59, Article 102591. https://doi.org/10.1016/j.redox.2022.102591

van der Borg, G., Warner, H., Ioannidis, M., van den Bogaart, G., & Roos, W. H. (2023). PLA 3D Printing as a Straightforward and Versatile Fabrication Method for PDMS Molds. Polymers, 15(6), Article 1498. https://doi.org/10.3390/polym15061498

Frans, M. T., Kuipers, E. M., Bianchi, F., & van den Bogaart, G. (2023). Unveiling the impact of GOLM1/GP73 on cytokine production in cancer and infectious disease. Immunology and Cell Biology, 101(8), 727-734. https://doi.org/10.1111/imcb.12664

Stempels, F. C., de Wit, A. S., Swierstra, M. S., Maassen, S., Bianchi, F., van den Bogaart, G., & Baranov, M. V. (2022). A sensitive and less cytotoxic assay for identification of proliferating T cells based on bioorthogonally-functionalized uridine analogue. Journal of Immunological Methods, 502, Article 113228. https://doi.org/10.1016/j.jim.2022.113228

Kumar, M., Singh, A., Del Secco, B., Baranov, M. V., van den Bogaart, G., Sacanna, S., & Thutupalli, S. (2022). Assembling anisotropic colloids using curvature-mediated lipid sorting. Soft Matter, 18(9), 1757-1766. https://doi.org/10.1039/d1sm01517f

Bandyopadhyay, G., Tang, K., Webster, N. J. G., van den Bogaart, G., & Mahata, S. K. (2022). Catestatin induces glycogenesis by stimulating the phosphoinositide 3-kinase-AKT pathway. Acta physiologica, 235(1), Article e13775. https://doi.org/10.1111/apha.13775

Liu, M. A., Shahabi, S., Jati, S., Tang, K., Gao, H., Jin, Z., Miller, W., Meunier, F. A., Ying, W., van den Bogaart, G., Ghosh, G., & Mahata, S. K. (2022). Gut microbial DNA and immune checkpoint gene Vsig4/CRIg are key antagonistic players in healthy aging and age-associated development of hypertension and diabetes. Frontiers in endocrinology, 13, Article 1037465. https://doi.org/10.3389/fendo.2022.1037465

Baranov, M. V., Ioannidis, M., Balahsioui, S., Boersma, A., de Boer, R., Kumar, M., Niwa, M., Hirayama, T., Zhou, Q., Hopkins, T. M., Grijpstra, P., Thutupalli, S., Sacanna, S., & van den Bogaart, G. (2022). Irregular particle morphology and membrane rupture facilitate ion gradients in the lumen of phagosomes. Biophysical Reports, 2(3), Article 100069. https://doi.org/10.1016/j.bpr.2022.100069

Maassen, S., Warner, H., Ioannidis, M., Jansma, J., Markus, H., El Aidy, S., Chiara, M.-D., Chiara, J. L., Maierhofer, L., Weavers, H., & van den Bogaart, G. (2022). Mitochondrial interaction of fibrosis-protective 5-methoxy tryptophan enhances collagen uptake by macrophages. Free Radical Biology and Medicine, 188, 287-297. Article 202206235. https://doi.org/10.1016/j.freeradbiomed.2022.06.235

Stempels, F. C., Janssens, M. H., Ter Beest, M., Mesman, R. J., Revelo, N. H., Ioannidis, M., & van den Bogaart, G. (2022). Novel and conventional inhibitors of canonical autophagy differently affect LC3-associated phagocytosis. FEBS Letters, 596(4), 491-509. Article 14280. https://doi.org/10.1002/1873-3468.14280

Warner, H., Mahajan, S., & van den Bogaart, G. (2022). Rerouting trafficking circuits through posttranslational SNARE modifications. Journal of Cell Science, 135(16), Article 260112. https://doi.org/10.1242/jcs.260112

Bazioti, V., La Rose, A. M., Maassen, S., Bianchi, F., de Boer, R., Halmos, B., Dabral, D., Guilbaud, E., Flohr-Svendsen, A., Groenen, A. G., Marmolejo-Garza, A., Koster, M. H., Kloosterhuis, N. J., Havinga, R., Pranger, A. T., Langelaar-Makkinje, M., de Bruin, A., van de Sluis, B., Kohan, A. B., ... Westerterp, M. (2022). T cell cholesterol efflux suppresses apoptosis and senescence and increases atherosclerosis in middle aged mice. Nature Communications, 13(1), Article 3799. https://doi.org/10.1038/s41467-022-31135-4

Ioannidis, M., Mahata, S. K., & van den Bogaart, G. (2022). The immunomodulatory functions of Chromogranin A-derived peptide Pancreastatin. Peptides, 158, Article 170893. https://doi.org/10.1016/j.peptides.2022.170893

Bilderbeek, R. J. C., Baranov, M. V., van den Bogaart, G., & Bianchi, F. (2022). Transmembrane Helices Are an Over-Presented and Evolutionarily Conserved Source of Major Histocompatibility Complex Class I and II Epitopes. Frontiers in Immunology, 12, Article 763044. https://doi.org/10.3389/fimmu.2021.763044

Linders, P. T. A., Ioannidis, M., Ter Beest, M., & van den Bogaart, G. (2022). Fluorescence Lifetime Imaging of pH along the Secretory Pathway. ACS chemical biology, 17(1), 240-251. https://doi.org/10.1021/acschembio.1c00907

Ottria, A., Zimmermann, M., Paardekooper, L. M., Carvalheiro, T., Vazirpanah, N., Silva-Cardoso, S., Affandi, A. J., Chouri, E., V D Kroef, M., Tieland, R. G., Bekker, C. P. J., Wichers, C. G. K., Rossato, M., Mocholi-Gimeno, E., Tekstra, J., Ton, E., van Laar, J. M., Cossu, M., Beretta, L., ... Marut, W. (2022). Hypoxia and TLR9 activation drive CXCL4 production in systemic sclerosis plasmacytoid dendritic cells via mtROS and HIF-2α. Rheumatology, 61(6), 2682-2693. Article keab532. https://doi.org/10.1093/rheumatology/keab532

Muntjewerff, E. M., Christoffersson, G., Mahata, S. K., & van den Bogaart, G. (2022). Putative regulation of macrophage-mediated inflammation by catestatin. Trends in Immunology, 43(1), 41-50. https://doi.org/10.1016/j.it.2021.11.002

Nie, L., Nusantara, A. C., Damle, V. G., Baranov, M. V., Chipaux, M., Reyes-San-Martin, C., Hamoh, T., Epperla, C. P., Guricova, M., Cigler, P., Van Den Bogaart, G., & Schirhagl, R. (2022). Quantum Sensing of Free Radicals in Primary Human Dendritic Cells. Nano Letters, 22(4), 1818-1825. https://doi.org/10.1021/acs.nanolett.1c03021

Muntjewerff, E. M., Parv, K., Mahata, S. K., van Riessen, N. K., Phillipson, M., Christoffersson, G., & van den Bogaart, G. (2022). The anti-inflammatory peptide Catestatin blocks chemotaxis. Journal of Leukocyte Biology, 112(2), 273-278. https://doi.org/10.1002/JLB.3CRA1220-790RR

Iyer, A., Baranov, M., Foster, A. J., Chordia, S., Roelfes, G., Vlijm, R., van den Bogaart, G., & Poolman, B. (2021). Chemogenetic Tags with Probe Exchange for Live-Cell Fluorescence Microscopy. ACS chemical biology, 16(5), 891-904. Article acschembio.1c00100. https://doi.org/10.1021/acschembio.1c00100

Muntjewerff, E. M., Tang, K., Lutter, L., Christoffersson, G., Nicolasen, M. J. T., Gao, H., Katkar, G. D., Das, S., Ter Beest, M., Ying, W., Ghosh, P., Aidy, S. E., Oldenburg, B., van den Bogaart, G., & Mahata, S. K. (2021). Chromogranin A regulates gut permeability via the antagonistic actions of its proteolytic peptides. Acta physiologica, 232(2), Article e13655. https://doi.org/10.1111/apha.13655

Linders, P. T. A., Gerretsen, E. C. F., Ashikov, A., Vals, M.-A., de Boer, R., Revelo, N. H., Arts, R., Baerenfaenger, M., Zijlstra, F., Huijben, K., Raymond, K., Muru, K., Fjodorova, O., Pajusalu, S., Õunap, K., Ter Beest, M., Lefeber, D., & van den Bogaart, G. (2021). Congenital disorder of glycosylation caused by starting site-specific variant in syntaxin-5. Nature Communications, 12(1), Article 6227. https://doi.org/10.1038/s41467-021-26534-y

Capelluto, D. G. S., Conde, C. B., Tumbarello, D. A., & van den Bogaart, G. (2021). Editorial: Signaling Proteins for Endosomal and Lysosomal Function. Frontiers in Cell and Developmental Biology, 9, Article 821719. https://doi.org/10.3389/fcell.2021.821719

Ying, W., Tang, K., Avolio, E., Schilling, J. M., Pasqua, T., Liu, M. A., Cheng, H., Gao, H., Zhang, J., Mahata, S., Ko, M. S., Bandyopadhyay, G., Das, S., Roth, D. M., Sahoo, D., Webster, N. J. G., Sheikh, F., Ghosh, G., Patel, H. H., ... Mahata, S. K. (2021). Immunosuppression of Macrophages Underlies the Cardioprotective Effects of CST (Catestatin). Hypertension (Dallas, Tex. : 1979), 77(5), 1670-1682. https://doi.org/10.1161/HYPERTENSIONAHA.120.16809

Baranov, M. V., Kumar, M., Sacanna, S., Thutupalli, S., & van den Bogaart, G. (2021). Modulation of Immune Responses by Particle Size and Shape. Frontiers in Immunology, 11, Article 607945. https://doi.org/10.3389/fimmu.2020.607945

Baranov, M. V., Bianchi, F., & van den Bogaart, G. (2021). The PIKfyve Inhibitor Apilimod: A Double-Edged Sword against COVID-19. Cells, 10(1), Article 30. https://doi.org/10.3390/cells10010030

Dabral, D., & van den Bogaart, G. (2021). The Roles of Phospholipase A₂ in Phagocytes. Frontiers in Cell and Developmental Biology, 9, Article 673502. https://doi.org/10.3389/fcell.2021.673502

Altulea, D., Maassen, S., Baranov, M. V., & van den Bogaart, G. (2021). What makes (hydroxy)chloroquine ineffective against COVID-19: Insights from cell biology. Journal of Molecular Cell Biology, 13(3), 175–184. Article mjab016. https://doi.org/10.1093/jmcb/mjab016

Muntjewerff, E. M., Meesters, L. D., & van den Bogaart, G. (2020). Antigen Cross-Presentation by Macrophages. Frontiers in Immunology, 11, Article 1276. https://doi.org/10.3389/fimmu.2020.01276

Muntjewerff, E. M., Meesters, L. D., van den Bogaart, G., & Revelo, N. H. (2020). Reverse Signaling by MHC-I Molecules in Immune and Non-Immune Cell Types. Frontiers in Immunology, 11, Article 605958. https://doi.org/10.3389/fimmu.2020.605958

Linders, P. T. A., Peters, E., ter Beest, M., Lefeber, D. J., & van den Bogaart, G. (2020). Sugary Logistics Gone Wrong: Membrane Trafficking and Congenital Disorders of Glycosylation. International Journal of Molecular Sciences, 21(13), 1-28. Article 4654. https://doi.org/10.3390/ijms21134654

Bianchi, F., & van den Bogaart, G. (2020). Vacuolar escape of foodborne bacterial pathogens. Journal of Cell Science, 134(5), Article jcs.247221. https://doi.org/10.1242/jcs.247221

Baranov, M. V., Olea, R. A., & van den Bogaart, G. (2019). Chasing Uptake: Super-Resolution Microscopy in Endocytosis and Phagocytosis. Trends in Cell Biology, 29(9), 727-739. https://doi.org/10.1016/j.tcb.2019.05.006

Paardekooper, L. M., Dingjan, I., Linders, P. T. A., Staal, A. H. J., Cristescu, S. M., Verberk, W. C. E. P., & van den Bogaart, G. (2019). Human Monocyte-Derived Dendritic Cells Produce Millimolar Concentrations of ROS in Phagosomes Per Second. Frontiers in Immunology, 10, Article 1216. https://doi.org/10.3389/fimmu.2019.01216

Revelo, N. H., Ter Beest, M., & van den Bogaart, G. (2019). Membrane trafficking as an active regulator of constitutively secreted cytokines. Journal of Cell Science, 133(5), Article 234781. https://doi.org/10.1242/jcs.234781

Paardekooper, L. M., Vos, W., & Van Den Bogaart, G. (2019). Oxygen in the tumor microenvironment: Effects on dendritic cell function. Oncotarget, 10(8), 883-896. https://doi.org/10.18632/oncotarget.26608

Paardekooper, L. M., van Vroonhoven, E., Ter Beest, M., & van den Bogaart, G. (2019). Radical Stress Is More Cytotoxic in the Nucleus than in Other Organelles. International Journal of Molecular Sciences, 20(17), Article 4147. https://doi.org/10.3390/ijms20174147

Linders, P. T., Horst, C. V. D., Beest, M. T., & van den Bogaart, G. (2019). Stx5-Mediated ER-Golgi Transport in Mammals and Yeast. Cells, 8(8), Article cells8080780. https://doi.org/10.3390/cells8080780

Sahu, B. S., Mahata, S., Bandyopadhyay, K., Mahata, M., Avolio, E., Pasqua, T., Sahu, C., Bandyopadhyay, G. K., Bartolomucci, A., Webster, N. J. G., Van Den Bogaart, G., Fischer-Colbrie, R., Corti, A., Eiden, L. E., & Mahata, S. K. (2019). Catestatin regulates vesicular quanta through modulation of cholinergic and peptidergic (PACAPergic) stimulation in PC12 cells. Cell and Tissue Research, 376(1), 51-70. https://doi.org/10.1007/s00441-018-2956-1

Verboogen, D. R. J., Revelo, N. H., Ter Beest, M., & van den Bogaart, G. (2019). Interleukin-6 secretion is limited by self-signaling in endosomes. The Journal of Cell Biology, 11(2), 144-157. https://doi.org/10.1093/jmcb/mjy038

Baranov, M. V., Bianchi, F., Schirmacher, A., van Aart, M. A. C., Maassen, S., Muntjewerff, E. M., Dingjan, I., Ter Beest, M., Verdoes, M., Keyser, S. G. L., Bertozzi, C. R., Diederichsen, U., & van den Bogaart, G. (2019). The Phosphoinositide Kinase PIKfyve Promotes Cathepsin-S-Mediated Major Histocompatibility Complex Class II Antigen Presentation. iScience , 11, 160-177. https://doi.org/10.1016/j.isci.2018.12.015

Muntjewerff, E. M., Revelo, N. H., & van den Bogaart, G. (2018). A positive feedback loop of IL-12 and IFN-gamma signaling potentiates both CD8+T cell and DC activation. European Journal of Immunology, 48, 179-180.

Muntjewerff, E. M., Dunkel, G., Nicolasen, M. J. T., Mahata, S. K., & van den Bogaart, G. (2018). Catestatin as a Target for Treatment of Inflammatory Diseases. Frontiers in Immunology, 9, Article 2199. https://doi.org/10.3389/fimmu.2018.02199

Dingjan, I., Linders, P. T. A., Verboogen, D. R. J., Revelo, N. H., ter Beest, M., & van den Bogaart, G. (2018). ENDOSOMAL AND PHAGOSOMAL SNAREs. Physiological reviews, 98(3), 1465-1492. https://doi.org/10.1152/physrev.00037.2017

Paardekooper, L. M., Bendix, M. B., Ottria, A., de Haer, L. W., Ter Beest, M., Radstake, T. R., Marut, W., & van den Bogaart, G. (2018). Hypoxia potentiates monocyte-derived dendritic cells for release of tumor necrosis factor alpha via MAP3K8. Bioscience reports, 38(6), Article BSR20182019. https://doi.org/10.1042/BSR20182019

CDG Grp, Ashikov, A., Abu Bakar, N., Wen, X.-Y., Niemeijer, M., Osorio, G. R. P., Brand-Arzamendi, K., Hasadsri, L., Hansikova, H., Raymond, K., Vicogne, D., Ondruskova, N., Simon, M. E. H., Pfundt, R., Timal, S., Beumers, R., Biot, C., Smeets, R., Kersten, M., ... Lefeber, D. J. (2018). Integrating glycomics and genomics uncovers SLC10A7 as essential factor for bone mineralization by regulating post-Golgi protein transport and glycosylation. Human Molecular Genetics, 27(17), 3029-3045. https://doi.org/10.1093/hmg/ddy213

Baranov, M., van Aart, M. A. C., Dingjan, I., ter Beest, M., & van den Bogaart, G. (2018). PIKfyve in phagosome maturation and antigen presentation. European Journal of Immunology, 48, 44-45.

van den Bogaart, G., Verboogen, D. R., & ter Beest, M. (2018). Quantitative Microscopy of SNARE Complexes in Live Cells. Biophysical Journal, 114(3), 9A-10A.

Verboogen, D. R. J., ter Beest, M., Honigmann, A., & van den Bogaart, G. (2018). Secretory vesicles of immune cells contain only a limited number of interleukin 6 molecules. FEBS Letters, 592(9), 1535-1544. https://doi.org/10.1002/1873-3468.13036

Baranov, M. V., Revelo, N. H., Verboogen, D. R. J., Ter Beest, M., & van den Bogaart, G. (2018). SWAP70 is a universal GEF-like adaptor for tethering actin to phagosomes. Small GTPases, 10(4), 311-322. https://doi.org/10.1080/21541248.2017.1328302

Bianchi, F., Textor, J., & van den Bogaart, G. (2018). Trans-membrane domains: an overlooked source of antigens. European Journal of Immunology, 48, 43-43.

Paardekooper, L. M., van den Bogaart, G., Kox, M., Dingjan, I., Neerincx, A. H., Bendix, M. B., ter Beest, M., Harren, F. J. M., Risby, T., Pickkers, P., Marczin, N., & Cristescu, S. M. (2017). Ethylene, an early marker of systemic inflammation in humans. Scientific Reports, 7, Article 6889. https://doi.org/10.1038/s41598-017-05930-9

Verboogen, D. R. J., Mancha, N. G., ter Beest, M., & van den Bogaart, G. (2017). Fluorescence Lifetime Imaging Microscopy reveals rerouting of SNARE trafficking driving dendritic cell activation. eLife, 6, Article 23525. https://doi.org/10.7554/eLife.23525

Dingjan, I., Linders, P. T. A., van den Bekerom, L., Baranov, M. V., Halder, P., ter Beest, M., & van den Bogaart, G. (2017). Oxidized phagosomal NOX2 complex is replenished from lysosomes. Journal of Cell Science, 130(7), 1285-1298. https://doi.org/10.1242/jcs.196931

Zuidscherwoude, M., Dunlock, V.-M. E., van den Bogaart, G., van Deventer, S. J., van der Schaaf, A., van Oostrum, J., Goedhart, J., 't Hout, J. I., Haemmerling, G. J., Tanaka, S., Nadler, A., Schultz, C., Wright, M. D., Adjobo-Hermans, M. J. W., & van Spriel, A. B. (2017). Tetraspanin microdomains control localized protein kinase C signaling in B cells. Science signaling, 10(478), Article 2755. https://doi.org/10.1126/scisignal.aag2755

Bianchi, F., Textor, J., & van den Bogaart, G. (2017). Transmembrane Helices Are an Overlooked Source of Major Histocompatibility Complex Class I Epitopes. Frontiers in Immunology, 8, Article 1118. https://doi.org/10.3389/fimmu.2017.01118

Dingjan, I., Paardekooper, L. M., Verboogen, D. R. J., von Mollard, G. F., ter Beest, M., & van den Bogaart, G. (2017). VAMP8-mediated NOX2 recruitment to endosomes is necessary for antigen release. European Journal of Cell Biology, 96(7), 705-714. https://doi.org/10.1016/j.ejcb.2017.06.007

Verboogen, D. R. J., Baranov, M. V., ter Beest, M., & van den Bogaart, G. (2017). Visualizing Intracellular SNARE Trafficking by Fluorescence Lifetime Imaging Microscopy. Journal of Visualized Experiments, (130), Article 56745. https://doi.org/10.3791/56745

Milovanovic, D., Platen, M., Junius, M., Diederichsen, U., Schaap, I. A. T., Honigmann, A., Jahn, R., & Van Den Bogaart, G. (2016). Calcium promotes the formation of syntaxin 1 mesoscale domains through phosphatidylinositol 4,5-bisphosphate. Journal of Biological Chemistry, 291(15), 7868-7876. https://doi.org/10.1074/jbc.M116.716225

Jansen, J. C., Cirak, S., Van Scherpenzeel, M., Timal, S., Reunert, J., Rust, S., Pérez, B., Vicogne, D., Krawitz, P., Wada, Y., Ashikov, A., Pérez-Cerdá, C., Medrano, C., Arnoldy, A., Hoischen, A., Huijben, K., Steenbergen, G., Quelhas, D., Diogo, L., ... Lefeber, D. J. (2016). CCDC115 Deficiency Causes a Disorder of Golgi Homeostasis with Abnormal Protein Glycosylation. American Journal of Human Genetics, 98(2), 310-321. https://doi.org/10.1016/j.ajhg.2015.12.010

Dingjan, I., Verboogen, D. R. J., Paardekooper, L. M., Revelo, N. H., Sittig, S. P., Visser, L. J., Von Mollard, G. F., Henriet, S. S. V., Figdor, C. G., Ter Beest, M., & Van Den Bogaart, G. (2016). Lipid peroxidation causes endosomal antigen release for cross-presentation. Scientific Reports, 6, Article 22064. https://doi.org/10.1038/srep22064

Farsi, Z., Preobraschenski, J., Van Den Bogaart, G., Riedel, D., Jahn, R., & Woehler, A. (2016). Single-Vesicle imaging reveals different transport mechanisms between glutamatergic and GABAergic vesicles. Science, 351(6276), 981-984. https://doi.org/10.1126/science.aad8142

Baranov, M. V., Revelo, N. H., Dingjan, I., Maraspini, R., ter Beest, M., Honigmann, A., & van den Bogaart, G. (2016). SWAP70 Organizes the Actin Cytoskeleton and Is Essential for Phagocytosis. Cell reports, 17(6), 1518-1531. https://doi.org/10.1016/j.celrep.2016.10.021

Verboogen, D. R. J., Dingjan, I., Revelo, N. H., Visser, L. J., Ter Beest, M., & Van Den Bogaart, G. (2016). The dendritic cell side of the immunological synapse. BioMolecular Concepts, 7(1), 17-28. https://doi.org/10.1515/bmc-2015-0028

Jansen, J. C., Timal, S., Van Scherpenzeel, M., Michelakakis, H., Vicogne, D., Ashikov, A., Moraitou, M., Hoischen, A., Huijben, K., Steenbergen, G., Van Den Boogert, M. A. W., Porta, F., Calvo, P. L., Mavrikou, M., Cenacchi, G., Van Den Bogaart, G., Salomon, J., Holleboom, A. G., Rodenburg, R. J., ... Lefeber, D. J. (2016). TMEM199 Deficiency is a Disorder of Golgi Homeostasis Characterized by Elevated Aminotransferases, Alkaline Phosphatase, and Cholesterol and Abnormal Glycosylation. American Journal of Human Genetics, 98(2), 322-330. https://doi.org/10.1016/j.ajhg.2015.12.011

van Spriel, A. B., van den Bogaart, G., & Cambi, A. (2015). Editorial: Membrane domains as new drug targets. Frontiers in Physiology, 6, 172. https://doi.org/10.3389/fphys.2015.00172

Milovanovic, D., Honigmann, A., Koike, S., Paehler, G., Junius, M., Muellar, S., Diederichsen, U., Janshoff, A., Grubmueller, H., Risselada, H. J., Eggeling, C., Hell, S. W., van den Bogaart, G., & Jahn, R. (2015). Hydrophobic mismatch sorts SNARE proteins into distinct membrane domains. Nature Communications, 6, Article 5984. https://doi.org/10.1038/ncomms6984

Zuidscherwoude, M., Goettfert, F., Dunlock, V. M. E., Figdor, C. G., van den Bogaart, G., & van Spriel, A. B. (2015). The tetraspanin web revisited by super-resolution microscopy. Scientific Reports, 5, Article srep12201. https://doi.org/10.1038/srep12201

Baranov, M. V., ter Beest, M., Reinieren-Beeren, I., Cambi, A., Figdor, C. G., & van den Bogaart, G. (2014). Podosomes of dendritic cells facilitate antigen sampling. Journal of Cell Science, 127(5), 1052-1064. https://doi.org/10.1242/jcs.141226

Baranov, M. V., ter Beest, M., & van den Bogaart, G. (2014). Reaching for far-flung antigen: How solid-core podosomes of dendritic cells transform into protrusive structures. Communicative & Integrative Biology, 7(5), Article e9709611. https://doi.org/10.4161/cib.29084

van den Bogaart, G., Lang, T., & Jahn, R. (2013). Microdomains of SNARE proteins in the plasma membrane. Current topics in membranes, 72, 193-230. https://doi.org/10.1016/B978-0-12-417027-8.00006-4

Seidel, S. A. I., Dijkman, P. M., Lea, W. A., van den Bogaart, G., Jerabek-Willemsen, M., Lazic, A., Joseph, J. S., Srinivasan, P., Baaske, P., Simeonov, A., Katrich, I., Melo, F. A., Ladbury, J. E., Schreiber, G., Watts, A., Braun, D., & Duhr, S. (2013). Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions. Methods, 59(3), 301-315. https://doi.org/10.1016/j.ymeth.2012.12.005

van den Bogaart, G., Meinema, A. C., Krasnikov, V., Veenhoff, L. M., & Poolman, B. (2013). Nuclear transport factor directs localization of protein synthesis during mitosis (Corrigendum; vol 11, pg 350, 2009). Nature Cell Biology, 15(4), 441. https://doi.org/10.1038/ncb2728

Honigmann, A., van den Bogaart, G., Iraheta, E., Risselada, H. J., Milovanovic, D., Mueller, V., Muellar, S., Diederichsen, U., Fasshauser, D., Grubmueller, H., Hell, S. W., Eggeling, C., Kuehnel, K., & Jahn, R. (2013). Phosphatidylinositol 4,5-bisphosphate clusters act as molecular beacons for vesicle recruitment. Nature Structural & Molecular Biology, 20(6), 679-686. https://doi.org/10.1038/nsmb.257 0

Khuong, T. M., Habets, R. L. P., Kuenen, S., Jahn, R., van den Bogaart, G., & Verstreken, P. (2013). Synaptic PI(3,4,5)P3 is required for Syntaxin1A clustering and neurotransmitter release. Neuron, 77(6), 1097-1108. https://doi.org/10.1016/j.neuron.2013.01.025

Vennekate, W., Schroeder, S., Lin, C. C., van den Bogaart, G., Grunwald, M., Jahn, R., & Walla, P. J. (2012). Cis- and trans-membrane interactions of synaptotagmin-1. Proceedings of the National Academy of Science of the United States of America, 109(27), 11037-11042. Article pnas.1116326109. https://doi.org/10.1073/pnas.1116326109

Park, Y., Hernandez, J. M., van den Bogaart, G., Ahmed, S., Riedel, D., & Jahn, R. (2012). Controlling synaptotagmin activity by electrostatic screening. Nature Structural & Molecular Biology, 19(10), 991-997. https://doi.org/10.1038/nsmb.237 5

Matta, B., Van Kolen, K., da Cunha, R., van den Bogaart, G., Mandemakers, W., Miskiewicz, K., de Bock, P.-J., Morais, V. A., Vilain, S., Haddad, D., Delbroek, L., Swerts, J., Chavez-Gutierrez, L., Esposito, G., Daneels, G., Karran, E., Holt, M., Gevaert, K., Moechars, D. W., ... Verstreken, P. (2012). LRRK2 controls an EndoA phosphorylation cycle in synaptic endocytosis. Neuron, 75(6), 1008-1021. https://doi.org/10.1016/j.neuron.2012.08.022

van den Bogaart, G., Meyerberg, K., Diederichsen, U., & Jahn, R. (2012). Phosphatidylinositol 4,5-bisphosphate increases Ca2+ affinity of synaptotagmin-1 by 40-fold. The Journal of Biological Chemistry, 287(20), 16447-16453. https://doi.org/10.1074/jbc.M112.343418

van den Bogaart, G., & Jahn, R. (2011). Counting the SNAREs needed for membrane fusion. Journal of Molecular Cell Biology, 3(4), 204-205. Article jmcb/mjr004. https://doi.org/10.1093/jmcb/mjr004

Mika, J. T., Krasnikov, V., Bogaart, G. V. D., Haan, F. D., & Poolman, B. (2011). Evaluation of Pulsed-FRAP and Conventional-FRAP for Determination of Protein Mobility in Prokaryotic Cells. PLoS ONE, 6(9), Article 25664. https://doi.org/10.1371/journal.pone.0025664

van den Bogaart, G. (2011). Inside insight to membrane fusion. Proceedings of the National Academy of Science of the United States of America, 108(29), 11729-11730. Article pnas.1108770108.

Meinema, A. C., Laba, J. K., Hapsari, R. A., Otten, R., Mulder, F. A. A., Kralt, A., van den Bogaart, G., Lusk, C. P., Poolman, B., & Veenhoff, L. M. (2011). Long Unfolded Linkers Facilitate Membrane Protein Import Through the Nuclear Pore Complex. Science, 333(6038), 90-93. https://doi.org/10.1126/science.1205741

van den Bogaart, G., Meyerberg, K., Risselada, J. H., Amin, H., Willig, K. I., Hubrich, B. E., Dier, M., Hell, S. W., Grubmueller, H., Diederichsen, U., & Jahn, R. (2011). Membrane protein sequestering by ionic protein-lipid interactions. Nature, 479(7374), 552-555. Article nature10545. https://doi.org/10.1038/nature10545

Kusters, I., van den Bogaart, G., Kedrov, A., Krasnikov, V., Fulyani, F., Poolman, B., & Driessen, A. J. M. (2011). Quaternary Structure of SecA in Solution and Bound to SecYEG Probed at the Single Molecule Level. Structure, 19(3), 430-439. https://doi.org/10.1016/j.str.2010.12.016

Meyerberg, K., Lygina, A. S., van den Bogaart, G., Jahn, R., & Diederichsen, U. (2011). SNARE derived peptide mimic inducing membrane fusion. Chemical Communications, 47(33), 9405-9407. https://doi.org/10.1039/c1cc12879e