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Research GELIFES GREEN Salles Lab

Publications

2021

Vink, S. N., Chrysargyris, A., Tzortzakis, N., & Salles, J. F. (2021). Bacterial community dynamics varies with soil management and irrigation practices in grapevines (Vitis vinifera L.). Applied Soil Ecology, 158, [103807]. https://doi.org/10.1016/j.apsoil.2020.103807
Vink, S. N., Dini-Andreote, F., Höfle, R., Kicherer, A., & Salles, J. F. (2021). Interactive effects of scion and rootstock genotypes on the root microbiome of grapevines (Vitis spp. L.). Applied Sciences, 11(4), [1615]. https://doi.org/10.3390/app11041615
García Hernández, E., Berg, M. P., Van Oosten, A. R., Smit, C., & Falcão Salles, J. (2021). Linking Bacterial Communities Associated with the Environment and the Ecosystem Engineer Orchestia gammarellus at Contrasting Salt Marsh Elevations. Microbial ecology. https://doi.org/10.1007/s00248-020-01656-w
Jia, X. (2021). Soil bacterial community assembly during succession. University of Groningen. https://doi.org/10.33612/diss.156586683

2020

Hendriks, K. P., Bisschop, K., Kortenbosch, H. H., Kavanagh, J. C., Larue, A. E. A., Phung, C-C., Bonte, D., Duijm, E. J., Falcão Salles, J., Pigot, A. L., Richter Mendoza, F. J., Schilthuizen, M., Anderson, M. J., Speksnijder, A. G. C. L., & Etienne, R. S. (2021). Microbiome and environment explain the absence of correlations between consumers and their diet in Bornean microsnails. Ecology, 102(2), [e03237]. https://doi.org/10.1002/ecy.3237
Jurburg, S. D., Assemien, F. L., Beaumelle, L., Salles, J. F., van Elsas, J. D., & Le Roux, X. (2020). A history of extreme disturbance affects the relationship between the abundances of nitrifiers in soil. Biology and Fertility of Soils , 56(8), 1177-1187. https://doi.org/10.1007/s00374-020-01491-8
van der Goot, E., van Spronsen, F. J., Falcão Salles, J., & van der Zee, E. A. (2020). A microbial community ecology perspective on the gut-microbiome-brain axis. Frontiers in endocrinology, 11, 611. [611]. https://doi.org/10.3389/fendo.2020.00611
Cortes-Tolalpa, L., Wang, Y., Salles, J. F., & van Elsas, J. D. (2020). Comparative genome analysis of the lignocellulose degrading bacteria Citrobacter freundii so4 and Sphingobacterium multivorum w15. Frontiers in Microbiology, 11, 248. [248]. https://doi.org/10.3389/fmicb.2020.00248
Jia, X., Dini-Andreote, F., & Falcão Salles, J. (2020). Comparing the influence of assembly processes governing bacterial community succession based on DNA and RNA data. Microorganisms, 8(6), [798]. https://doi.org/10.3390/microorganisms8060798
Mawarda, P. C., Le Roux, X., van Elsas, J. D., & Salles, J. F. (2020). Deliberate introduction of invisible invaders: A critical appraisal of the impact of microbial inoculants on soil microbial communities. Soil Biology and Biochemistry, 148, [107874]. https://doi.org/10.1016/j.soilbio.2020.107874
Engel, F. G., Dini-Andreote, F., Eriksson, B. K., Salles, J. F., de Lima Brossi, M. J., & Matthiessen, B. (2020). Dispersal mitigates bacterial dominance over microalgal competitor in metacommunities. Oecologia, 193(3), 677-687. https://doi.org/10.1007/s00442-020-04707-8
Dicke, M., Eilenberg, J., Salles, J. F., Jensen, A. B., Lecocq, A., Pijlman, G. P., van Loon, J. J. A., & van Oers, M. M. (2020). Edible insects unlikely to contribute to transmission of coronavirus SARS-CoV-2. Journal of Insects as Food and Feed, 6(4), 333-339. https://doi.org/10.3920/JIFF2020.0039
van Veelen, H. P. J., Falcão Salles, J., Matson, K. D., van der Velde, M., & Tieleman, B. I. (2020). Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata. Animal microbiome, 2(1), [21]. https://doi.org/10.1186/s42523-020-00039-3
Deng, X., Zhang, N., Shen, Z., Zhu, C., Li, R., Salles, J. F., & Shen, Q. (2020). Rhizosphere bacteria assembly derived from fumigation and organic amendment triggers the direct and indirect suppression of tomato bacterial wilt disease. Applied Soil Ecology, 147, [103364]. https://doi.org/10.1016/j.apsoil.2019.103364
Hernández, E. G., Baraza, E., Smit, C., Berg, M. P., & Falcão Salles, J. (2020). Salt marsh elevation drives root microbial composition of the native invasive grass Elytrigia atherica. Microorganisms, 8(10), 1-19. [1619]. https://doi.org/10.3390/microorganisms8101619
Ferreira, D. A., da Silva, T. F., Pylro, V. S., Salles, J. F., Andreote, F. D., & Dini-Andreote, F. (2020). Soil microbial diversity affects the plant-root colonization by arbuscular mycorrhizal fungi. Microbial ecology. https://doi.org/10.1007/s00248-020-01502-z
Xing, J., Jia, X., Wang, H., Ma, B., Salles, J. F., & Xu, J. (2020). The legacy of bacterial invasions on soil native communities. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15086
Pratama, A. A., Terpstra, J., de Oliveria, A. L. M., & Salles, J. F. (2020). The role of rhizosphere bacteriophages in plant health. Trends in Microbiology, 28(9), 709-718. https://doi.org/10.1016/j.tim.2020.04.005
Sternhagen, E. C., Black, K. L., Hartmann , E. DL., Shivega, W. G., Johnson, P. G., McGlynn, R. D., Schmaltz, L. C., Asheim Keller, R. J., Vink, S. N., & Aldrich-Wolfe, L. (2020). Contrasting patterns of functional diversity in coffee root fungal communities associated with organic and conventionally managed fields. Applied and environmental microbiology, 36(11), [e00052-20]. https://doi.org/10.1128/AEM.00052-20
Brons, J., Vink, S. N., de Vos, M., Reuter, S., Dobrindt, U., & van Elsas, J. D. (2020). Fast identification of Escherichia coli in urinary tract infections using a virulence gene based PCR approach in a novel thermal cycler. Journal of microbiological methods, 169, [105799]. https://doi.org/10.1016/j.mimet.2019.105799
Vink, S. N., Bienkowski, D., Roberts, D. M., Daniell, T. J., & Neilson, R. (2020). Impact of land use and management practices on soil nematode communities of Machair, a low-input calcareous ecosystem of conservation importance. Science of the Total Environment, 738, [ 140164]. https://doi.org/10.1016/j.scitotenv.2020.140164
Aldrich-Wolfe, L., Black, K. L., Hartmann, E. D. L., Shivega, W. G., Schmaltz, L. C., McGlynn, R. D., Johnson, P. G., Asheim Keller, R. J., & Vink, S. N. (2020). Taxonomic shifts in arbuscular mycorrhizal fungal communities with shade and soil nitrogen across conventionally managed and organic coffee agroecosystems. Mycorrhiza, 30(4), 513-527. https://doi.org/10.1007/s00572-020-00967-7
Tragust, S., Brinker, P., Rossel, N., & Otti, O. (2020). Balancing life history investment decisions in founding ant queens. Frontiers in Ecology and Evolution, 8, [76]. https://doi.org/10.3389/fevo.2020.00076
Pratama, A. A., Javier Jimenez, D., Chen, Q., Bunk, B., Sproeer, C., Overmann, J., & van Elsas, J. D. (2020). Delineation of a subgroup of the genus Paraburkholderia, including P. terrae DSM 17804(T), P. hospita DSM 17164(T), and four soil-isolated fungiphiles, reveals remarkable genomic and ecological features: Proposal for the definition of a P. hospita species cluster. Genome Biology and Evolution, 12(4), 325-344. https://doi.org/10.1093/gbe/evaa031
Jimenez, D. J., Wang, Y., Chaib de Mares, M., Cortes-Tolalpa, L., Mertens, J. A., Hector, R. E., Lin, J., Johnson, J., Lipzen, A., Barry, K., Mondo, S. J., Grigoriev, I., Nichols, N. N., & van Elsas, J. D. (2020). Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium. FEMS microbiology ecology, 96(1), [186]. https://doi.org/10.1093/femsec/fiz186

2019

Puentes-Tellez, P. E., & Salles, J. F. (2020). Dynamics of abundant and rare bacteria during degradation of lignocellulose from sugarcane biomass. Microbial ecology, 79(2), 312-325. https://doi.org/10.1007/s00248-019-01403-w
Dietz, M. W., Salles, J. F., Hsu, B-Y., Dijkstra, C., Groothuis, T. G. G., van der Velde, M., Verkuil, Y. I., & Tieleman, B. I. (2020). Prenatal transfer of gut bacteria in Rock pigeon. Microorganisms, 8(1), [61]. https://doi.org/10.3390/microorganisms8010061
Kyselkova, M., Salles, J. F., Dumestre, A., Benoit, Y., & Grundmann, G. L. (2019). Distinct bacterial consortia established in ETBE-degrading enrichments from a polluted aquifer. Applied Sciences, 9(20). https://doi.org/10.3390/app9204247
Brinker, P., Fontaine, M. C., Beukeboom, L. W., & Falcao Salles, J. (2019). Host, symbionts, and the microbiome: The missing tripartite interaction. Trends in Microbiology, 27(6), 480-488. https://doi.org/10.1016/j.tim.2019.02.002
Xing, J., Wang, H., Brookes, P. C., Salles, J. F., & Xu, J. (2019). Soil pH and microbial diversity constrain the survival of E-coli in soil. Soil biology & biochemistry, 128, 139-149. https://doi.org/10.1016/j.soilbio.2018.10.013
Pires, E. S., Pires Hardoim, C. C., Miranda, K. R., Secco, D. A., Lobo, L. A., de Carvalho, D. P., Han, J., Borchers, C. H., Ferreira, R. B. R., Salles, J. F., Cavalcanti Pilotto Domingues, R. M., & Martha Antunes, L. C. (2019). The gut microbiome and metabolome of two riparian communities in the Amazon. Frontiers in Microbiology, 10, [2003]. https://doi.org/10.3389/fmicb.2019.02003
van der Loos, L. M., Eriksson, B. K., & Falcão Salles, J. (2019). The Macroalgal Holobiont in a Changing Sea. Trends in Microbiology, 27(7), 635-650. https://doi.org/10.1016/j.tim.2019.03.002
Gurung, K., Wertheim, B., & Salles, J. F. (2019). The microbiome of pest insects: It is not just bacteria. Entomologia Experimentalis et Applicata, 167(3), 156-170. https://doi.org/10.1111/eea.12768
van Ginkel, W. G., van Vliet, D., van der Goot, E., Faassen, M. H. J. R., Vogel, A., Heiner-Fokkema, M. R., van der Zee, E. A., & van Spronsen, F. J. (2019). Blood and brain biochemistry and behaviour in NTBC and dietary treated tyrosinemia type 1 mice. Nutrients, 11(10), [2486]. https://doi.org/10.3390/nu11102486
Bruinenberg, V. M., van Vliet, D., van der Goot, E., Counotte, D. S., Kuhn, M., van Spronsen, F. J., & van der Zee, E. A. (2019). Long-term dietary intervention with low Phe and/or a specific nutrient combination improve certain aspects of brain functioning in phenylketonuria (PKU). PLoS ONE, 14(3), [0213391]. https://doi.org/10.1371/journal.pone.0213391
van Vliet, D., van der Goot, E., van Ginkel, W. G., van Faassen, M. H. J. R., de Blaauw, P., Kema, I. P., Martinez, A., Heiner-Fokkema, M. R., van der Zee, E. A., & van Spronsen, F. J. (2019). The benefit of large neutral amino acid supplementation to a liberalized phenylalanine-restricted diet in adult phenylketonuria patients: Evidence from adult Pah-Enu2 mice. Nutrients, 11(9), [2252]. https://doi.org/10.3390/nu11092252

2018

Jia, X., Dini-Andreote, F., & Salles, J. F. (2018). Community assembly processes of the microbial rare biosphere. Trends in Microbiology, 26(9), 738-747. https://doi.org/10.1016/j.tim.2018.02.011
Wang, M., Veldsink, J. H., Dini-Andreote, F., & Salles, J. F. (2018). Compositional and abundance changes of nitrogen-cycling genes in plant-root microbiomes along a salt marsh chronosequence. Antonie Van Leeuwenhoek: International Journal of General and Molecular Microbiology, 111(11), 2061-2078. https://doi.org/10.1007/s10482-018-1098-5
Puentes-Tellez, P. E., & Salles, J. F. (2018). Construction of Effective Minimal Active Microbial Consortia for Lignocellulose Degradation. Microbial ecology, 76(2), 419-429. https://doi.org/10.1007/s00248-017-1141-5
Leite, D. C. A., Salles, J. F., Calderon, E. N., Castro, C. B., Bianchini, A., Marques, J. A., van Elsas, J. D., & Peixoto, R. S. (2018). Coral bacterial-core abundance and network complexity as proxies for anthropogenic pollution. Frontiers in Microbiology, 9, [833]. https://doi.org/10.3389/fmicb.2018.00833
Dini-Andreote, F., van Elsas, J. D., Olff, H., & Salles, J. F. (2018). Dispersal-competition tradeoff in microbiomes in the quest for land colonization. Scientific Reports, 8(1), [9451]. https://doi.org/10.1038/s41598-018-27783-6
Cortes-Tolalpa, L., Norder, J., van Elsas, J. D., & Falcao Salles, J. (2018). Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate. Applied Microbiology and Biotechnology, 2913-2927. https://doi.org/10.1007/s00253-017-8714-6
van Veelen, H. P. J., Salles, J. F., & Tieleman, B. I. (2018). Microbiome assembly of avian eggshells and their potential as transgenerational carriers of maternal microbiota. The ISME journal, 12(5), 1375-1388. https://doi.org/10.1038/s41396-018-0067-3
Mas-Carrio, E., Dini-Andreote, F., Brossi, M. J. D. L., Salles, J. F., & Olff, H. (2018). Organic amendment under increasing agricultural intensification: Effects on soil bacterial communities and plant productivity. Frontiers in Microbiology, 9, [2612]. https://doi.org/10.3389/fmicb.2018.02612
Nunes, I., Jurburg, S., Jacquiod, S., Brejnrod, A., Salles, J. F., Prieme, A., & Sorensen, S. J. (2018). Soil bacteria show different tolerance ranges to an unprecedented disturbance. Biology and Fertility of Soils, 54(2), 189-202. https://doi.org/10.1007/s00374-017-1255-4
Leite, D. C. A., Salles, J. F., Calderon, E. N., van Elsas, J. D., & Peixoto, R. S. (2018). Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont. Ecology and Evolution, 8(3), 1818-1832. https://doi.org/10.1002/ece3.3717
Javier Jimenez, D., Chaib De Mares, M., & Falcao Salles, J. (2018). Temporal expression dynamics of plant biomass-degrading enzymes by a synthetic bacterial consortium growing on sugarcane bagasse. Frontiers in Microbiology, 9, [299]. https://doi.org/10.3389/fmicb.2018.00299
Mallon, C. A., Le Roux, X., van Doorn, G. S., Dini-Andreote, F., Poly, F., & Salles, J. F. (2018). The impact of failure: Unsuccessful bacterial invasions steer the soil microbial community away from the invader's niche. The ISME journal, 12(3), 728-741. https://doi.org/10.1038/s41396-017-0003-y
Brinker, P., Weig, A., Rambold, G., Feldhaar, H., & Tragust, S. (2019). Microbial community composition of nest-carton and adjoining soil of the ant Lasius fuliginosus and the role of host secretions in structuring microbial communities. Fungal Ecology, 38, 44-53. https://doi.org/10.1016/j.funeco.2018.08.007
van der Goot, E., Bruinenberg, V. M., Hormann, F. M., Eisel, U. L. M., van Spronsen, F. J., & van der Zee, E. A. (2019). Hippocampal microglia modifications in C57Bl/6 Pahenu2 and BTBR Pahenu2 phenylketonuria (PKU) mice depend on the genetic background, irrespective of disturbed sleep patterns. Neurobiology of Learning and Memory, 160, 139-143. https://doi.org/10.1016/j.nlm.2018.05.002
van Vliet, D., van der Goot, E., Bruinenberg, V. M., van Faassen, M., de Blaauw, P., Kema, I. P., Heiner-Fokkema, M. R., van der Zee, E. A., & van Spronsen, F. J. (2018). Large neutral amino acid supplementation as an alternative to the phenylalanine-restricted diet in adults with phenylketonuria: evidence from adult Pah-enu2 mice. Journal of Nutritional Biochemistry, 53, 20-27. https://doi.org/10.1016/j.jnutbio.2017.09.020

2017

Jurburg, S. D., Natal-da-Luz, T., Raimundo, J., Morais, P. V., Sousa, J. P., van Elsas, J. D., & Salles, J. F. (2018). Bacterial communities in soil become sensitive to drought under intensive grazing. Science of the Total Environment, 618, 1638-1646. https://doi.org/10.1016/j.scitotenv.2017.10.012
Jurburg, S. D., Nunes, I., Stegen, J. C., Le Roux, X., Priemé, A., Sørensen, S. J., & Salles, J. F. (2017). Autogenic succession and deterministic recovery following disturbance in soil bacterial communities. Scientific Reports, 7, [45691]. https://doi.org/10.1038/srep45691
Cortes Tolalpa, L., Falcao Salles, J., & van Elsas, J. (2017). Bacterial synergism in lignocellulose biomass degradation: Complementary roles of degraders as influenced by complexity of the carbon source. Frontiers in Microbiology, 8, [1628]. https://doi.org/10.3389/fmicb.2017.01628
López-Lozano, N. E., Pereira E Silva, M. C., Poly, F., Guillaumaud, N., van Elsas, J. D., & Salles, J. F. (2017). Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils. Antonie Van Leeuwenhoek: International Journal of General and Molecular Microbiology, 110(11), 1453-1465. https://doi.org/10.1007/s10482-017-0898-3
Dietz, M., Falcao Salles, J., Both, C., Groothuis, T., & Tieleman, I. (2017). Do environmental factors influence the development of the gut microbiome in young birds?. Poster session presented at ESEB 2017, Groningen, Netherlands.
Javier Jiménez, D., Dini-Andreote, F., DeAngelis, K. M., Singer, S. W., Salles, J. F., & van Elsas, J. D. (2017). Ecological insights into the dynamics of plant biomass-degrading microbial consortia. Trends in Microbiology, 25(10), 788-796. https://doi.org/10.1016/j.tim.2017.05.012
Wang, M., Li, E., Liu, C., Jousset, A., & Salles, J. F. (2017). Functionality of root-associated bacteria along a salt marsh primary succession. Frontiers in Microbiology, 8, [2102]. https://doi.org/10.3389/fmicb.2017.02102
Jurburg, S. D., Nunes, I., Brejnrod, A., Jacquiod, S., Prieme, A., Sorensen, S. J., Van Elsas, J. D., & Salles, J. F. (2017). Legacy effects on the recovery of soil bacterial communities from extreme temperature perturbation. Frontiers in Microbiology, 8, [1832]. https://doi.org/10.3389/fmicb.2017.01832
Tilstra, A., Wijgerde, T., Dini-Andreote, F., Eriksson, B. K., Salles, J. F., Pen, I., Osinga, R., & Wild, C. (2017). Light induced intraspecific variability in response to thermal stress in the hard coral Stylophora pistillata. PeerJ, 5, [e3802]. https://doi.org/10.7717/peerj.3802
van Veelen, H. P. J., Falcao Salles, J., & Tieleman, B. I. (2017). Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks. Microbiome, 5(1), [156]. https://doi.org/10.1186/s40168-017-0371-6
El Aidy, S., Ramsteijn, A. S., Dini-Andreote, F., van Eijk, R., Houwing, D. J., Salles, J. F., & Olivier, J. D. A. (2017). Serotonin transporter genotype modulates the gut microbiota composition in young rats, an effect augmented by early life stress. Frontiers in cellular neuroscience, 11, [222]. https://doi.org/10.3389/fncel.2017.00222
Salles, J. F., Cassia Pereira e Silva , de, M., Dini-Andreote, F., Dias, A. C. F., Guillaumaud, N., Poly, F., & van Elsas, J. D. (2017). Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence. Biogeochemistry, 132(1-2), 185-201. https://doi.org/10.1007/s10533-017-0296-y
Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V., Küsel, K., Rillig, M. C., Rivett, D. W., Salles, J. F., van der Heijden, M. G. A., Youssef, N. H., Zhang, X., Wei, Z., & Hol, W. H. G. (2017). Where less may be more: How the rare biosphere pulls ecosystems strings. The ISME journal, 1-10. https://doi.org/10.1038/ismej.2016.174
Vink, S. N., & Elsas, van, J. D. (2017). Determining the Pathogenicity of 13 Fungal Species with Respect to Their Required Containment Measures. COGEM. https://cogem.net/app/uploads/2019/07/Onderzoeksrapport-CGM-2017-02.pdf
Vink, S. N., Jordan, N. R., Aldrich-Wolfe, L., Huerd, S. C., Sheaffer, C. C., & Kinkel, L. L. (2017). Soil conditioning affects interactions between native and invasive exotic perennials of semi-natural grasslands. Journal of Applied Ecology, 54, 1526-1533. https://doi.org/10.1111/1365-2664.12823

2016

da Silva, T. F., Vollu, R. E., Marques, J. M., Salles, J. F., & Seldin, L. (2017). The bacterial community associated with rose-scented geranium (Pelargonium graveolens) leaves responds to anthracnose symptoms. Plant and Soil, 414(1-2), 69-79. https://doi.org/10.1007/s11104-016-3102-z
Chaplinska, M., Gerritsma, S., Dini-Andreote, F., Falcao Salles, J., & Wertheim, B. (2016). Bacterial communities differ among Drosophila melanogaster populations and affect host resistance against parasitoids. PLoS ONE, 11(12), [e0167726]. https://doi.org/10.1371/journal.pone.0167726
Adam, E., Groenenboom, A. E., Kurm, V., Rajewska, M., Schmidt, R., Tyc, O., Weidner, S., Berg, G., de Boer, W., & Falcão Salles, J. (2016). Controlling the Microbiome: Microhabitat Adjustments for Successful Biocontrol Strategies in Soil and Human Gut. Frontiers in Microbiology, 7, [1079]. https://doi.org/10.3389/fmicb.2016.01079
Cortes-Tolalpa, L., Jiménez, D. J., de Lima Brossi, M. J., Salles, J. F., & van Elsas, J. D. (2016). Different inocula produce distinctive microbial consortia with similar lignocellulose degradation capacity. Applied Microbiology and Biotechnology, 100(17), 7713-7725. https://doi.org/10.1007/s00253-016-7516-6
Wang, M., Yang, P., & Falcao Salles, J. (2016). Distribution of root-associated bacterial communities along a salt-marsh primary succession. Frontiers in Plant Science, 6, [1188]. https://doi.org/10.3389/fpls.2015.01188
Dini-Andreote, F., Pylro, V. S., Baldrian, P., van Elsas, J. D., & Salles, J. F. (2016). Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities. The ISME journal, 10(8), 1984-1997. https://doi.org/10.1038/ismej.2015.254
Dini-Andreote, F., de L. Brossi, M. J., van Elsas, J. D., & Salles, J. F. (2016). Reconstructing the genetic potential of the microbially-mediated nitrogen cycle in a salt marsh ecosystem. Frontiers in Microbiology, 7, [902]. https://doi.org/10.3389/fmicb.2016.00902
Zhang, M., Brons, J. K., & van Elsas, J. D. (2016). The complete sequences and ecological roles of two IncP-1 beta plasmids, pHB44 and pBS64, isolated from the mycosphere of Laccaria proxima. Frontiers in Microbiology, 7, [909]. https://doi.org/10.3389/fmicb.2016.00909
Bruinenberg, V. M., van der Goot, E., van Vliet, D., de Groot, M. J., Mazzola, P. N., Heiner-Fokkema, M. R., van Faassen, M., van Spronsen, F. J., & van der Zee, E. A. (2016). The behavioral consequence of phenylketonuria in mice depends on the genetic background. Frontiers in Behavioral Neuroscience, 10(233), [233]. https://doi.org/10.3389/fnbeh.2016.00233

2015

Dini-Andreote, F., Stegen, J. C., van Elsas, J. D., & Salles, J. F. (2015). Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession. Proceedings of the National Academy of Science of the United States of America, 112(11), E1326-E1332. https://doi.org/10.1073/pnas.1414261112
Jurburg, S., & Falcao Salles, J. (2015). Functional redundancy and ecosystem function: The soil microbiota as a case study. In J. A. Blanco (Ed.), Biodiversity in Ecosystems: Linking Structure and Function (1st ed., pp. 29-49). InTech. https://doi.org/10.5772/58981
Mallon, C. A., Elsas, J. D. V., & Salles, J. F. (2015). Microbial Invasions: The process, patterns, and mechanisms. Trends in Microbiology, 23(11), 719-729. https://doi.org/10.1016/j.tim.2015.07.013
Mallon, C. A., Poly, F., Le Roux, X., Marring, I., van Elsas, J. D., & Falcao Salles, J. (2015). Resource pulses can alleviate the biodiversity-invasion relationship in soil microbial communities. Ecology, 96(4), 915-926. https://doi.org/10.1890/14-1001.1
Grizard, S., Versteegh, M. A., Ndithia, H. K., Salles, J. F., & Tieleman, B. I. (2015). Shifts in bacterial communities of eggshells and antimicrobial activities in eggs during incubation in a ground-nesting passerine. PLoS ONE, 10(4), [e0121716]. https://doi.org/10.1371/journal.pone.0121716
Vink, S. N., Jordan, N. R., Huerd, S. C., Sheaffer, C. C., Kinkel, L. L., & Aldrich-Wolfe, L. (2015). Soil conditioning effects of native and exotic grassland perennials on the establishment of native and exotic plants. Plant and Soil, 393, 335-349. https://doi.org/10.1007/s11104-015-2498-1
Zhang, M., Warmink, J., Pereira e Silva, M. C., Brons, J., Smalla, K., & van Elsas, J. D. (2015). IncP-1 beta Plasmids Are Important Carriers of Fitness Traits for Variovorax Species in the Mycosphere-Two Novel Plasmids, pHB44 and pBS64, with Differential Effects Unveiled. Microbial ecology, 70(1), 141-153. https://doi.org/10.1007/s00248-014-0550-y

2014

Grizard, S., Dini Andreote, F., Tieleman, B. I., & Falcao Salles, J. (2014). Dynamics of bacterial and fungal communities associated with eggshells during incubation. Ecology and Evolution, 4(7), 1140-1157. https://doi.org/10.1002/ece3.1011
Dini-Andreote, F., de Cassia Pereira e Silva, M., Triado-Margarit, X., Casamayor, E. O., van Elsas, J. D., & Falcao Salles, J. (2014). Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning. ISME Journal, 8(10), 1989-2001. https://doi.org/10.1038/ismej.2014.54
Falcao Salles, J., & Mallon, C. (2014). Invasive plant species set up their own niche. New Phytologist, 204(3), 435–437. https://doi.org/10.1111/nph.13070
Semenov, A. V., de Cassia Pereira e Silva, M., Salles, J. F., Schmitt, H., & van Elsas, J. D. (2014). Quantitative assessment of soil functioning across a representative range of Dutch soils. Ecological indicators, 39, 88-93. https://doi.org/10.1016/j.ecolind.2013.11.009
Vink, S. N., Neilson, R., Robinson, D., & Daniell, T. (2014). Temporal and land use effects on soil bacterial community structure of the machair, an EU Habitats Directive Annex I low-input agricultural system. Applied Soil Ecology, 73, 116-123. https://doi.org/10.1016/j.apsoil.2013.08.012

2013

Videira, S. S., de Cássia Pereira e Silva, M., Galisa, P. D. S., Franco Dias, A. C., Nissinen, R., Baldani Divan, V. L., van Elsas, J. D., Baldani, J. I., & Salles, J. F. (2013). Culture-independent molecular approaches reveal a mostly unknown high diversity of active nitrogen-fixing bacteria associated with Pennisetum purpureum—a bioenergy crop. Plant and Soil, 373(1-2), 737 - 754. https://doi.org/10.1007/s11104-013-1828-4
Franco Dias, A. C., Dini-Andreote, F., Hannula, S. E., Andreote, F. D., de Cássia Pereira e Silva, M., Salles, J. F., de Boer, W., van Veen, J., & van Elsas, J. D. (2013). Different selective effects on rhizosphere bacteria exerted by genetically modified versus conventional potato lines. PLoS ONE, 8(7), [e67948]. https://doi.org/10.1371/journal.pone.0067948
Vandamme, P., De Brandt, E., Houf, K., Salles, J. F., van Elsas, J. D., Spilker, T., & LiPuma, J. J. (2013). Burkholderia humi sp nov., Burkholderia choica sp nov., Burkholderia telluris sp nov., Burkholderia terrestris sp nov and Burkholderia udeis sp nov. Burkholderia glathei-like bacteria from soil and rhizosphere soil. International Journal of Systematic and Evolutionary Microbiology, 63, 4707-4718. https://doi.org/10.1099/ijs.0.048900-0
Pereira e Silva, M. C., Semenov, A. V., Schmitt, H., van Elsas, J. D., & Salles, J. F. (2013). Microbe-mediated processes as indicators to establish the normal operating range of soil functioning. Soil Biology and Biochemistry, 57, 995-1002. https://doi.org/10.1016/j.soilbio.2012.10.002
Inceoglu, O., van Overbeek, L. S., Salles, J. F., & van Elsas, J. D. (2013). Normal operating range of bacterial communities in soil used for potato cropping. Applied and environmental microbiology, 79(4), 1160-1170. https://doi.org/10.1128/AEM.02811-12
Inceoglu, O., Sablayrolles, C., van Elsas, J. D., & Salles, J. F. (2013). Shifts in soil bacterial communities associated with the potato rhizosphere in response to aromatic sulfonate amendments. Applied Soil Ecology, 63, 78-87. https://doi.org/10.1016/j.apsoil.2012.09.004
Le Roux, X., Schmid, B., Poly, F., Barnard, R. L., Niklaus, P. A., Guillaumaud, N., Habekost, M., Oelmann, Y., Philippot, L., Falcao Salles, J., Schloter, M., Steinbeiss, S., & Weigelt, A. (2013). Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands. PLoS ONE, 8(4), [e61069]. https://doi.org/10.1371/journal.pone.0061069
de Cassia Pereira e Silva, M., Schloter-Hai, B., Schloter, M., van Elsas, J. D., & Salles, J. F. (2013). Temporal dynamics of abundance and composition of nitrogen-fixing communities across agricultural soils. PLoS ONE, 8(9), [e74500]. https://doi.org/10.1371/journal.pone.0074500
Coyer, J. A., Hoarau, G., Kuo, J., Tronholm, A., Veldsink, J., & Olsen, J. L. (2013). Phylogeny and temporal divergence of the seagrass family Zosteraceae using one nuclear and three chloroplast loci. Systematics and biodiversity, 11(3), 271-284. https://doi.org/10.1080/14772000.2013.821187

2012

Franco Dias, A. C., Pereira e Silva, M. D. C., Cotta, S. R., Dini Andreote, F., Soares, F. L., Salles, J. F., Azevedo, J. L., van Elsas, J. D., & Andreote, F. D. (2012). Abundance and genetic diversity of nifH gene sequences in anthropogenically affected Brazilian mangrove sediments. Applied and environmental microbiology, 78(22), 7960-7967. https://doi.org/10.1128/AEM.02273-12
de Cassia Pereira e Silva, M., Poly, F., Guillaumaud, N., van Elsas, J. D., & Falcao Salles, J. (2012). Fluctuations in ammonia oxidizing communities across agricultural soils are driven by soil structure and pH. Frontiers in Microbiology, 3, [77]. https://doi.org/10.3389/fmicb.2012.00077
Semenov, A. V., de Cassia Pereira e Silva, M., Szturc-Koestsier, A. E., Schmitt, H., Salles, J. F., & van Elsas, J. D. (2012). Impact of incorporated fresh C-13 potato tissues on the bacterial and fungal community composition of soil. Soil biology & biochemistry, 49, 88-95. https://doi.org/10.1016/j.soilbio.2012.02.016
van Elsas, J. D., Chiurazzi, M., Mallon, C. A., Elhottova, D., Kristufek, V., & Salles, J. F. (2012). Microbial diversity determines the invasion of soil by a bacterial pathogen. Proceedings of the National Academy of Sciences of the United States of America, 109(4), 1159 - 1164. https://doi.org/10.1073/pnas.1109326109
Cavalcante Franco Dias, A., Hoogwout, E. F., de Cassia Pereira e Silva, M., Falcão Salles, J., van Overbeek, L. S., & van Elsas, J. D. (2012). Potato cultivar type affects the structure of ammonia oxidizer communities in field soil under potato beyond the rhizosphere. Soil Biology and Biochemistry, 50, 85 - 95. https://doi.org/10.1016/j.soilbio.2012.03.006
Falcao Salles, J., Le Roux, X., & Poly, F. (2012). Relating phylogenetic and functional diversity among denitrifiers and quantifying their capacity to predict community functioning. Frontiers in Microbiology, 3, [209]. https://doi.org/10.3389/fmicb.2012.00209
Inceoglu, O., Salles, J. F., & van Elsas, J. D. (2012). Soil and Cultivar Type Shape the Bacterial Community in the Potato Rhizosphere. Microbial ecology, 63(2), 460-470. https://doi.org/10.1007/s00248-011-9930-8
de Cassia Pereira e Silva, M., Franco Dias, A. C., van Elsas, J. D., & Salles, J. F. (2012). Spatial and temporal variation of archaeal, bacterial and fungal communities in agricultural soils. PLoS ONE, 7(12), [e51554]. https://doi.org/10.1371/journal.pone.0051554

2011

Inceoglu, O., Abu Al-Soud, W., Salles, J. F., Semenov, A. V., & van Elsas, J. D. (2011). Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing. PLoS ONE, 6(8), [23321]. https://doi.org/10.1371/journal.pone.0023321
Pereira e Silva, M. C., Semenov, A. V., van Elsas, J. D., & Salles, J. F. (2011). Seasonal variations in the diversity and abundance of diazotrophic communities across soils. FEMS Microbial Ecology, 77(1), 57-68. https://doi.org/10.1111/j.1574-6941.2011.01081.x

2010

Inceoglu, O., Falcao Salles, J., van Overbeek, L., & van Elsas, J. D. (2010). Effects of plant genotype and growth stage on the betaproteobacterial communities associated with different potato cultivars in two fields. Applied and environmental microbiology, 76(11), 3675-3684. https://doi.org/10.1128/AEM.00040-10

2009

Salles, J. F., Poly, F., Schmid, B., & Le Roux, X. (2009). Community niche predicts the functioning of denitrifying bacterial assemblages. Ecology, 90(12), 3324-32. https://doi.org/10.1890/09-0188.1
Andreote, F. D., Carneiro, R. T., Falcão Salles, J., Marcon, J., Labate, C. A., Azevedo, J. L., & Araújo, W. L. (2009). Culture-independent assessment of Rhizobiales-related Alphaproteobacteria and the diversity of Methylobacterium in the rhizosphere and rhizoplane of transgenic eucalyptus. Microbial ecology, 57(1), 82-93. https://doi.org/10.1007/s00248-008-9405-8
Tzeneva, V. A., Salles, J. F., Naumova, N., de Vos, W. M., Kuikman, P. J., Dolfing, J., & Smidt, H. (2009). Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity. Research in Microbiology, 160(2), 89-98. https://doi.org/10.1016/j.resmic.2008.12.001

2008

Vanlaere, E., van der Meer, J. R., Falsen, E., F. Salles, J., De Brandt, E., & Vandamme, P. (2008). Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon contaminated soil. International Journal of Systematic and Evolutionary Microbiology, 58(Part 2), 420-423. [58]. https://doi.org/10.1099/ijs.0.65451-0
Brons, J., & van Elsas, J. D. (2008). Analysis of bacterial communities in soil by use of denaturing gradient gel electrophoresis and clone libraries, as influenced by different reverse primers. Applied Environmental Microbiology, 74(9), 2717-2727. https://doi.org/10.1128/AEM.02195-07
Coyer, J. A., Miller, K. A., Engle, J. M., Veldsink, J., Cabello-Pasini, A., Stam, W. T., & Olsen, J. L. (2008). Eelgrass meadows in the california channel islands and adjacent coast reveal a mosaic of two species, evidence for introgression and variable clonality. Annals of Botany, 101(1), 73-87. https://doi.org/10.1093/aob/mcm288

2007

Costa, R., Falcao Salles, J., Berg, G., & Smalla, K. (2007). Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants. Environmental Microbiology, 8, 2136-2149. [8]. https://doi.org/10.1111/j.1462-2920.2006.01096.x
van Doorn, R., Szemes, M., Bonants, P., Kowalchuk, G. A., F. Salles, J., Ortenberg, E., & Schoen, C. D. (2007). Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArraysTM. BMC Genomics, 8, [276]. https://doi.org/10.1186/1471-2164-8-276
Hoarau, G. G., Coyer, J. A., Veldsink, J. H., Stam, W. T., & Olsen, J. L. (2007). Glacial refugia and recolonization pathways in the brown seaweed Fucus serratus. Molecular Ecology, 16(17), 3606-3616. https://doi.org/10.1111/j.1365-294x.2007.03408.x

2006

Salles, JF., Samyn, E., Vandamme, P., van Veen, JA., & van Elsas, JD. (2006). Changes in agricultural management drive the diversity of Burkholderia species isolated from soil on PLAT medium. Soil biology & biochemistry, 38(4), 661-673. https://doi.org/10.1016/j.soilbio.2005.06.018
Salles, J. F., van Elsas, J. D., & van Veen, J. A. (2006). Effect of agricultural management regime on Burkholderia community structure in soil. Microbial ecology, 52(2), 267-279. https://doi.org/10.1007/s00248-006-9048-6

2005

Sessitsch, A., Coenye, T., Sturz, AV., Vandamme, P., Barka, EA., Salles, JF., Van Elsas, JD., Faure, D., Reiter, B., Glick, BR., Wang-Pruski, G., & Nowak, J. (2005). Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties. International Journal of Systematic and Evolutionary Microbiology, 55, 1187-1192. https://doi.org/10.1099/ijs.0.63149-0

2004

Salles, JF., van Veen, JA., & van Elsas, JD. (2004). Multivariate analyses of Burkholderia species in soil: Effect of crop and land use history. Applied and environmental microbiology, 70(7), 4012-4020.
Olsen, JL., Stam, WT., Coyer, JA., Reusch, TBH., Billingham, M., Bostrom, C., Calvert, E., Christie, H., Granger, S., La Lumiere, R., Milchakova, N., Oudot-Le Secq, MP., Procaccini, G., Sanjabi, B., Serrao, E., Veldsink, J., Widdicombe, S., & Wyllie-Echeverria, S. (2004). North Atlantic phylogeography and large-scale population differentiation of the seagrass Zostera marina L. Molecular Ecology, 13(7), 1923-1941. https://doi.org/10.1111/j.1365-294X.2004.02205.x

2003

da Silva, K. R. A., Falcao Salles, J., Seldin, L., & van Elsas, J. (2003). Application of a novel Paenibacillus-specific PCR-DGGE method and sequence analysis to assess the diversity of Paenibacillus spp. in the maize rhizosphere. Journal of microbiological methods, 54(2), 213-231. https://doi.org/10.1016/S0167-7012(03)00039-3

2002

van Elsas, J. D., Garbeva, P., & Salles, J. (2002). Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens. Biodegradation, 13, 29-40. https://doi.org/10.1023/A:1016393915414
Falcao Salles, J., De Souza, F. A., & van Elsas, J. D. (2002). Molecular method to assess the diversity of Burkholderia species in environmental samples. Applied and environmental microbiology, 68(4), 1595-1603. https://doi.org/10.1128/AEM.68.4.1595-1603.2002
Olsen, J. L., Sadowski, G., Stam, W. T., Veldsink, J. H., & Jones, K. (2002). Characterization of microsatellite loci i the marine seaweed Ascophyllum nodosum (Phaeophyceae; Fucales). Molecular Ecology Notes, 33 - 34. https://doi.org/10.1046/j.1471-8286.2002.00137.x
Olsen, JL., Sadowski, G., Stam, WT., Veldsink, JH., & Jones, K. (2002). Characterization of microsatellite loci in the marine seaweed Ascophyllum nodosum (Phaeophyceae; Fucales). Molecular Ecology Notes, 2(1), 33-34.
Coyer, J. A., Veldsink, J. H., Jones, K., Stam, W. T., & Olsen, J. L. (2002). Characterization of microsatellite loci in the marine seaweeds, Fucus serratus and F-evanescens (Heterokontophyta; Fucaceae). Molecular Ecology Notes, 2(1), 35-37. https://doi.org/10.1046/j.1471-8286.2002.00138.x
Schaafsma, A., van Doormaal, J. J., Muskiet, F. A. J., Hofstede, G. J. H., Pakan, I., & van der Veer, E. (2002). Positive effects of a chicken eggshell powder-enriched vitamin-mineral supplement on femoral neck bone mineral density in healthy late post-menopausal Dutch women. British Journal of Nutrition, 87(3), 267-275. https://doi.org/10.1079/BJN2001515

2000

Reis, V. M., Dos Reis, J., Salles, J. F., & Schloter, M. (2000). Characterisation of different polyclonal antisera to quantify Herbaspirillum spp. in elephant grass (Pennisetum purpureum Schun.). Symbiosis, 29(2), 139-150.
Reis, V. M., Reis Junior, F. B., Salles, JF., & Schloter, M. (2000). Charaterisation of different polyclonal antisera to quantify Herbaspirillum spp. in Elephant grass (Pennisetum purpureum Schun). Symbiosis, 29(2), 139-150.

1995

Daemen, T., Hofstede, G., Ten Kate, M. T., Bakker-Woudenberg, I. A. J. M., & Scherphof, G. L. (1995). Liposomal doxorubicin-induced toxicity: Depletion and impairment of phagocytic activity of liver macrophages. International Journal of Cancer, 61(5), 716-721. https://doi.org/10.1002/ijc.2910610520
Last modified:22 June 2020 4.53 p.m.