Publications

Araujo, A. S. F., Jia, X., Miranda, A. R. L., Pereira, A. P. D. A., Melo, V. M. M., Rocha, S. M. B., Costa, R. M., Saraiva, T. C. D. S., Mendes, L. W., & Salles, J. F. (2023). Changes in the bacterial rare biosphere after permanent application of composted tannery sludge in a tropical soil. Chemosphere, 313, Article 137487. https://doi.org/10.1016/j.chemosphere.2022.137487

Liu, X., Mei, S., & Falcao Salles, J. (2023). Inoculated microbial consortia perform better than single strains in living soil: A meta-analysis. Applied Soil Ecology, 190, Article 105011. https://doi.org/10.1016/j.apsoil.2023.105011

Li, Y., Deng, X., Zhang, N., Shen, Z., Li, R., Shen, Q., & Salles, J. F. (2023). Rhizosphere suppression hinders antibiotic resistance gene (ARG) spread under bacterial invasion. One Health, 16, Article 100481. https://doi.org/10.1016/j.onehlt.2023.100481

Wang, Y., Jiménez, D. J., Zhang, Z., & van Elsas, J. D. (2023). Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: A metatranscriptomic study. Biotechnology for Biofuels and Bioproducts, 16(1), Article 54. https://doi.org/10.1186/s13068-023-02289-0

Gurung, K., Vink, S. N., Salles, J. F., & Wertheim, B. (2023). More persistent bacterial than fungal associations in the microbiota of a pest insect. Journal of Pest Science, 96, 785–796. https://doi.org/10.1007/s10340-022-01524-1

Deng, X., Zhang, N., Li, Y., Zhu, C., Qu, B., Liu, H., Li, R., Bai, Y., Shen, Q., & Falcao Salles, J. (2022). Bio-organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities. New Phytologist, 235(4), 1558-1574. https://doi.org/10.1111/nph.18221

Yu, Y., van der Zwaag, M., Wedman, J. J., Permentier, H., Plomp, N., Jia, X., Kanon, B., Eggens-Meijer, E., Buist, G., Harmsen, H., Kok, J., Salles, J. F., Wertheim, B., Hayflick, S. J., Strauss, E., Grzeschik, N. A., Schepers, H., & Sibon, O. C. M. (2022). Coenzyme A precursors flow from mother to zygote and from microbiome to host. Molecular Cell, 82(14), 2650-2665.e12. https://doi.org/10.1016/j.molcel.2022.05.006

Saatkamp, H. W., Aartsma, Y., Hogeveen, H., Augustijn, M., Baumann, A., Beukeboom, L. W., Borghuis, A., Bovenkerk, B., van der Bruggen, M., Companjen, M. H., Dörper, A., Salles, J. F., van der Fels-Klerx, H. J., Fischer, A. R. H., Haenen, O., Hosseini, A., van den Hurk, J., Jacobs, P., Jansen, W. L., ... Dicke, M. (2022). Development of sustainable business models for insect-fed poultry production: opportunities and risks. Journal of Insects as Food and Feed, 8(12), 1469-1483. https://doi.org/10.3920/JIFF2021.0216

van der Goot, E., Vink, S. N., van Vliet, D., van Spronsen, F. J., Falcao Salles, J., & van der Zee, E. A. (2022). Gut-microbiome composition in response to phenylketonuria depends on dietary phenylalanine in BTBR Pah^enu2 mice. Frontiers in nutrition, 8, Article 735366. https://doi.org/10.3389/fnut.2021.735366

Dietz, M., Matson, K. D., Versteegh, M., van der Velde, M., Parmentier, H. K., Arts, J. A. J., Falcao Salles, J., & Tieleman, B. I. (2022). Gut microbiota of homing pigeons shows summer–winter variation under constant diet indicating a substantial effect of temperature. Animal microbiome, 4, Article 64. https://doi.org/10.1186/s42523-022-00216-6

Vogel, M., Shah, P. N., Voulgari-Kokota, A., Maistrou, S., Aartsma, Y., Beukeboom, L. W., Salles, J. F., van Loon, J. J. A., Dicke, M., & Wertheim, B. (2022). Health of the black soldier fly and house fly under mass-rearing conditions: Innate immunity and the role of the microbiome. Journal of Insects as Food and Feed, 8(8), 857-878. https://doi.org/10.3920/JIFF2021.0151

Voulgari-Kokota, A., Beukeboom, L. W., Wertheim, B., & Salles, J. F. (2022). Houseflies harbor less diverse microbiota under laboratory conditions but maintain a consistent set of host-associated bacteria. Scientific Reports, 12(1), Article 11132. https://doi.org/10.1038/s41598-022-15186-7

Mawarda, P. C., Mallon, C. A., Le Roux, X., van Elsas, J. D., & Salles, J. F. (2022). Interactions between bacterial inoculants and native soil bacterial community: The case of spore-forming Bacillus spp. FEMS microbiology ecology, 98(12), 1-11. https://doi.org/10.1093/femsec/fiac127

Brinker, P., Chen, F., Ben Chehida, Y., Beukeboom, L., Fontaine, M., & Falcao Salles, J. (2022). Microbiome composition is shaped by geography and population structure in the parasitic wasp Asobara japonica , but not in the presence of the endosymbiont Wolbachia. Molecular Ecology. Advance online publication. https://doi.org/10.1111/mec.16699

Bisschop, K., Kortenbosch, H. H., van Eldijk, T. J. B., Mallon, C. A., Salles, J. F., Bonte, D., & Etienne, R. S. (2022). Microbiome heritability and its role in adaptation of hosts to novel resources. Frontiers in Microbiology, 13, 703183. Article 703183. https://doi.org/10.3389/fmicb.2022.703183

Frąc, M., Hannula, E. S., Bełka, M., Salles, J. F., & Jedryczka, M. (2022). Soil mycobiome in sustainable agriculture. Frontiers in Microbiology, 13, Article 1033824. https://doi.org/10.3389/fmicb.2022.1033824

Mawarda, P., Lakke, S. L., van Elsas, J. D., & Falcao Salles, J. (2022). Temporal dynamics of the soil bacterial community following Bacillus invasion. iScience , 25(5), Article 104185. https://doi.org/10.1016/j.isci.2022.104185

Mawarda, P. C., Le Roux, X., Uribe Acosta, M., van Elsas, J. D., & Falcao Salles, J. (2022). The impact of protozoa addition on the survivability of Bacillus inoculants and soil microbiome dynamics. ISME Communications, 2, Article 82 (2022). https://doi.org/10.1038/s43705-022-00166-9

Liu, X., Le Roux, X., & Salles, J. F. (2022). The legacy of microbial inoculants in agroecosystems and potential for tackling climate change challenges. Iscience, 25(3), Article 103821. https://doi.org/10.1016/j.isci.2022.103821

van Veelen, H. P. J., Salles, J. F., Matson, K. D., van Doorn, G. S., van der Velde, M., & Tieleman, B. I. (2022). The microbial environment modulates non-genetic maternal effects on egg immunity. Animal microbiome, 4(1), Article 44. https://doi.org/10.1186/s42523-022-00195-8

Jia, X., Dini-Andreote, F., & Salles, J. F. (2022). Unravelling the interplay of ecological processes structuring the bacterial rare biosphere. ISME Communications, 2(1), Article 96. https://doi.org/10.1038/s43705-022-00177-6

Chen, Q., Deng, X., Elzenga, J. T. M., & van Elsas, J. D. (2022). Effect of soil bacteriomes on mycorrhizal colonization by Rhizophagus irregularis: Interactive effects on maize (Zea mays L.) growth under salt stress. Biology and Fertility of Soils , 58, 515-525. https://doi.org/10.1007/s00374-022-01636-x

Angulo, V., Beriot, N., Garcia-Hernandez, E., Li, E., Masteling, R., & Lau, J. A. (2022). Plant-microbe eco-evolutionary dynamics in a changing world. New Phytologist, 234(6), 1919-1928. https://doi.org/10.1111/nph.18015

Oberman, K., Hovens, I., de Haan, J., Falcao-Salles, J., van Leeuwen, B., & Schoemaker, R. (2021). Acute pre-operative ibuprofen improves cognition in a rat model for postoperative cognitive dysfunction. Journal of neuroinflammation, 18(1), 1-13. Article 156. https://doi.org/10.1186/s12974-021-02206-y

Vink, S. N., Chrysargyris, A., Tzortzakis, N., & Salles, J. F. (2021). Bacterial community dynamics varies with soil management and irrigation practices in grapevines (Vitis vinifera L.). Applied Soil Ecology, 158, Article 103807. https://doi.org/10.1016/j.apsoil.2020.103807

Hovens, I. B., van Leeuwen, B. L., Falcao-Salles, J., de Haan, J. J., & Schoemaker, R. G. (2021). Enteral enriched nutrition to prevent cognitive dysfunction after surgery: A study in rats. Brain, behavior, & immunity - health, 16, Article 100305. https://doi.org/10.1016/j.bbih.2021.100305

Vink, S. N., Dini-Andreote, F., Höfle, R., Kicherer, A., & Salles, J. F. (2021). Interactive effects of scion and rootstock genotypes on the root microbiome of grapevines (Vitis spp. L.). Applied Sciences, 11(4), Article 1615. https://doi.org/10.3390/app11041615

García Hernández, E., Berg, M. P., Van Oosten, A. R., Smit, C., & Falcão Salles, J. (2021). Linking bacterial communities associated with the environment and the ecosystem engineer Orchestia gammarellus at contrasting salt marsh elevations. Microbial ecology, 82, 537-548. https://doi.org/10.1007/s00248-020-01656-w

Hendriks, K. P., Bisschop, K., Kavanagh, J. C., Kortenbosch, H. H., Larue, A. E. A., Bonte, D., Duijm, E. J., Salles, J. F., Richter Mendoza, F. J., Schilthuizen, M., & Etienne, R. S. (2021). Plant diets of land snail community members are similar in composition but differ in richness. Journal of Molluscan Studies, 87(4), Article eyab041. https://doi.org/10.1093/mollus/eyab041

Deng, X., Zhang, N., Shen, Z., Zhu, C., Liu, H., Xu, Z., Li, R., Shen, Q., & Salles, J. F. (2021). Soil microbiome manipulation triggers direct and possible indirect suppression against Ralstonia solanacearum and Fusarium oxysporum. NPJ biofilms and microbiomes, 7(1), Article 33. https://doi.org/10.1038/s41522-021-00204-9

Wang, Y., Brons, J. K., & van Elsas, J. D. (2021). Considerations on the identity and diversity of organisms affiliated with Sphingobacterium multivorum: Proposal for a new species, Sphingobacterium paramultivorum. Microorganisms, 9(10), Article 2057. https://doi.org/10.3390/microorganisms9102057

Zandbergen, L., Brons, J., Halverson, T., Wolfe, A. J., & de Vos, M. (2021). The good and the bad: Ecological interaction measurements between the urinary microbiota and uropathogens. Frontiers in Microbiology, 12, Article 659450. https://doi.org/10.3389/fmicb.2021.659450

van Vliet, D., van der Goot, E., van Ginkel, W. G., van Faassen, H. J. R., de Blaauw, P., Kema, I. P., Heiner-Fokkema, M. R., van der Zee, E. A., & van Spronsen, F. J. (2022). The increasing importance of LNAA supplementation in phenylketonuria at higher plasma phenylalanine concentrations. Molecular Genetics and Metabolism, 135(1), 27-34. https://doi.org/10.1016/j.ymgme.2021.11.003

Dijkstra, A. M., van Vliet, N., van Vliet, D., Romani, C., Huijbregts, S. C. J., van der Goot, E., Hovens, I. B., van der Zee, E. A., Kema, I. P., Heiner-Fokkema, M. R., & van Spronsen, F. J. (2021). Correlations of blood and brain biochemistry in phenylketonuria: Results from the Pah-enu2 PKU mouse. Molecular Genetics and Metabolism, 134(3), 250-256. https://doi.org/10.1016/j.ymgme.2021.09.004

Wang, Y., Elzenga, T., & van Elsas, J. D. (2021). Effect of culture conditions on the performance of lignocellulose-degrading synthetic microbial consortia. Applied Microbiology and Biotechnology, 105, 7981–7995. https://doi.org/10.1007/s00253-021-11591-6

Hendriks, K. P., Bisschop, K., Kortenbosch, H. H., Kavanagh, J. C., Larue, A. E. A., Phung, C-C., Bonte, D., Duijm, E. J., Falcão Salles, J., Pigot, A. L., Richter Mendoza, F. J., Schilthuizen, M., Anderson, M. J., Speksnijder, A. G. C. L., & Etienne, R. S. (2021). Microbiome and environment explain the absence of correlations between consumers and their diet in Bornean microsnails. Ecology, 102(2), Article e03237. https://doi.org/10.1002/ecy.3237

Ferreira, D. A., da Silva, T. F., Pylro, V. S., Salles, J. F., Andreote, F. D., & Dini-Andreote, F. (2021). Soil microbial diversity affects the plant-root colonization by arbuscular mycorrhizal fungi. Microbial ecology, 82, 100–103. https://doi.org/10.1007/s00248-020-01502-z

Xing, J., Jia, X., Wang, H., Ma, B., Salles, J. F., & Xu, J. (2021). The legacy of bacterial invasions on soil native communities. Environmental Microbiology, 23(2), 669-681. https://doi.org/10.1111/1462-2920.15086

Jurburg, S. D., Assemien, F. L., Beaumelle, L., Salles, J. F., van Elsas, J. D., & Le Roux, X. (2020). A history of extreme disturbance affects the relationship between the abundances of nitrifiers in soil. Biology and Fertility of Soils , 56(8), 1177-1187. https://doi.org/10.1007/s00374-020-01491-8

van der Goot, E., van Spronsen, F. J., Falcão Salles, J., & van der Zee, E. A. (2020). A microbial community ecology perspective on the gut-microbiome-brain axis. Frontiers in endocrinology, 11, 611. Article 611. https://doi.org/10.3389/fendo.2020.00611

Cortes-Tolalpa, L., Wang, Y., Salles, J. F., & van Elsas, J. D. (2020). Comparative genome analysis of the lignocellulose degrading bacteria Citrobacter freundii so4 and Sphingobacterium multivorum w15. Frontiers in Microbiology, 11, 248. Article 248. https://doi.org/10.3389/fmicb.2020.00248

Jia, X., Dini-Andreote, F., & Falcão Salles, J. (2020). Comparing the influence of assembly processes governing bacterial community succession based on DNA and RNA data. Microorganisms, 8(6), Article 798. https://doi.org/10.3390/microorganisms8060798

Mawarda, P. C., Le Roux, X., van Elsas, J. D., & Salles, J. F. (2020). Deliberate introduction of invisible invaders: A critical appraisal of the impact of microbial inoculants on soil microbial communities. Soil Biology and Biochemistry, 148, Article 107874. https://doi.org/10.1016/j.soilbio.2020.107874

Engel, F. G., Dini-Andreote, F., Eriksson, B. K., Salles, J. F., de Lima Brossi, M. J., & Matthiessen, B. (2020). Dispersal mitigates bacterial dominance over microalgal competitor in metacommunities. Oecologia, 193(3), 677-687. https://doi.org/10.1007/s00442-020-04707-8

Dicke, M., Eilenberg, J., Salles, J. F., Jensen, A. B., Lecocq, A., Pijlman, G. P., van Loon, J. J. A., & van Oers, M. M. (2020). Edible insects unlikely to contribute to transmission of coronavirus SARS-CoV-2. Journal of Insects as Food and Feed, 6(4), 333-339. https://doi.org/10.3920/JIFF2020.0039

van Veelen, H. P. J., Falcão Salles, J., Matson, K. D., van der Velde, M., & Tieleman, B. I. (2020). Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata. Animal microbiome, 2(1), Article 21. https://doi.org/10.1186/s42523-020-00039-3

Deng, X., Zhang, N., Shen, Z., Zhu, C., Li, R., Salles, J. F., & Shen, Q. (2020). Rhizosphere bacteria assembly derived from fumigation and organic amendment triggers the direct and indirect suppression of tomato bacterial wilt disease. Applied Soil Ecology, 147, Article 103364. https://doi.org/10.1016/j.apsoil.2019.103364

Hernández, E. G., Baraza, E., Smit, C., Berg, M. P., & Falcão Salles, J. (2020). Salt marsh elevation drives root microbial composition of the native invasive grass Elytrigia atherica. Microorganisms, 8(10), 1-19. Article 1619. https://doi.org/10.3390/microorganisms8101619

Pratama, A. A., Terpstra, J., de Oliveria, A. L. M., & Salles, J. F. (2020). The role of rhizosphere bacteriophages in plant health. Trends in Microbiology, 28(9), 709-718. https://doi.org/10.1016/j.tim.2020.04.005

Sternhagen, E. C., Black, K. L., Hartmann , E. DL., Shivega, W. G., Johnson, P. G., McGlynn, R. D., Schmaltz, L. C., Asheim Keller, R. J., Vink, S. N., & Aldrich-Wolfe, L. (2020). Contrasting patterns of functional diversity in coffee root fungal communities associated with organic and conventionally managed fields. Applied and environmental microbiology, 86(11), Article 5220. https://doi.org/10.1128/AEM.00052-20

Brons, J., Vink, S. N., de Vos, M., Reuter, S., Dobrindt, U., & van Elsas, J. D. (2020). Fast identification of Escherichia coli in urinary tract infections using a virulence gene based PCR approach in a novel thermal cycler. Journal of microbiological methods, 169, Article 105799. https://doi.org/10.1016/j.mimet.2019.105799

Vink, S. N., Bienkowski, D., Roberts, D. M., Daniell, T. J., & Neilson, R. (2020). Impact of land use and management practices on soil nematode communities of Machair, a low-input calcareous ecosystem of conservation importance. Science of the Total Environment, 738, Article 140164. https://doi.org/10.1016/j.scitotenv.2020.140164

Aldrich-Wolfe, L., Black, K. L., Hartmann, E. D. L., Shivega, W. G., Schmaltz, L. C., McGlynn, R. D., Johnson, P. G., Asheim Keller, R. J., & Vink, S. N. (2020). Taxonomic shifts in arbuscular mycorrhizal fungal communities with shade and soil nitrogen across conventionally managed and organic coffee agroecosystems. Mycorrhiza, 30(4), 513-527. https://doi.org/10.1007/s00572-020-00967-7

Tragust, S., Brinker, P., Rossel, N., & Otti, O. (2020). Balancing life history investment decisions in founding ant queens. Frontiers in Ecology and Evolution, 8, Article 76. https://doi.org/10.3389/fevo.2020.00076

Pratama, A. A., Javier Jimenez, D., Chen, Q., Bunk, B., Sproeer, C., Overmann, J., & van Elsas, J. D. (2020). Delineation of a subgroup of the genus Paraburkholderia, including P. terrae DSM 17804(T), P. hospita DSM 17164(T), and four soil-isolated fungiphiles, reveals remarkable genomic and ecological features: Proposal for the definition of a P. hospita species cluster. Genome Biology and Evolution, 12(4), 325-344. https://doi.org/10.1093/gbe/evaa031

Jimenez, D. J., Wang, Y., Chaib de Mares, M., Cortes-Tolalpa, L., Mertens, J. A., Hector, R. E., Lin, J., Johnson, J., Lipzen, A., Barry, K., Mondo, S. J., Grigoriev, I., Nichols, N. N., & van Elsas, J. D. (2020). Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium. FEMS microbiology ecology, 96(1), Article 186. https://doi.org/10.1093/femsec/fiz186

Puentes-Tellez, P. E., & Salles, J. F. (2020). Dynamics of abundant and rare bacteria during degradation of lignocellulose from sugarcane biomass. Microbial ecology, 79(2), 312-325. https://doi.org/10.1007/s00248-019-01403-w

Dietz, M. W., Salles, J. F., Hsu, B-Y., Dijkstra, C., Groothuis, T. G. G., van der Velde, M., Verkuil, Y. I., & Tieleman, B. I. (2020). Prenatal transfer of gut bacteria in Rock pigeon. Microorganisms, 8(1), Article 61. https://doi.org/10.3390/microorganisms8010061

Kyselkova, M., Salles, J. F., Dumestre, A., Benoit, Y., & Grundmann, G. L. (2019). Distinct bacterial consortia established in ETBE-degrading enrichments from a polluted aquifer. Applied Sciences, 9(20). https://doi.org/10.3390/app9204247

Brinker, P., Fontaine, M. C., Beukeboom, L. W., & Salles, J. F. (2019). Host, symbionts, and the microbiome: The missing tripartite interaction. Trends in Microbiology, 27(6), 480-488. https://doi.org/10.1016/j.tim.2019.02.002

Xing, J., Wang, H., Brookes, P. C., Salles, J. F., & Xu, J. (2019). Soil pH and microbial diversity constrain the survival of E-coli in soil. Soil biology & biochemistry, 128, 139-149. https://doi.org/10.1016/j.soilbio.2018.10.013

Pires, E. S., Pires Hardoim, C. C., Miranda, K. R., Secco, D. A., Lobo, L. A., de Carvalho, D. P., Han, J., Borchers, C. H., Ferreira, R. B. R., Salles, J. F., Cavalcanti Pilotto Domingues, R. M., & Martha Antunes, L. C. (2019). The gut microbiome and metabolome of two riparian communities in the Amazon. Frontiers in Microbiology, 10, Article 2003. https://doi.org/10.3389/fmicb.2019.02003

van der Loos, L. M., Eriksson, B. K., & Falcão Salles, J. (2019). The Macroalgal Holobiont in a Changing Sea. Trends in Microbiology, 27(7), 635-650. https://doi.org/10.1016/j.tim.2019.03.002

Gurung, K., Wertheim, B., & Salles, J. F. (2019). The microbiome of pest insects: It is not just bacteria. Entomologia Experimentalis et Applicata, 167(3), 156-170. https://doi.org/10.1111/eea.12768

van Ginkel, W. G., van Vliet, D., van der Goot, E., Faassen, M. H. J. R., Vogel, A., Heiner-Fokkema, M. R., van der Zee, E. A., & van Spronsen, F. J. (2019). Blood and brain biochemistry and behaviour in NTBC and dietary treated tyrosinemia type 1 mice. Nutrients, 11(10), Article 2486. https://doi.org/10.3390/nu11102486

Bruinenberg, V. M., van Vliet, D., van der Goot, E., Counotte, D. S., Kuhn, M., van Spronsen, F. J., & van der Zee, E. A. (2019). Long-term dietary intervention with low Phe and/or a specific nutrient combination improve certain aspects of brain functioning in phenylketonuria (PKU). PLoS ONE, 14(3), Article 0213391. https://doi.org/10.1371/journal.pone.0213391

van Vliet, D., van der Goot, E., van Ginkel, W. G., van Faassen, M. H. J. R., de Blaauw, P., Kema, I. P., Martinez, A., Heiner-Fokkema, M. R., van der Zee, E. A., & van Spronsen, F. J. (2019). The benefit of large neutral amino acid supplementation to a liberalized phenylalanine-restricted diet in adult phenylketonuria patients: Evidence from adult Pah-Enu2 mice. Nutrients, 11(9), Article 2252. https://doi.org/10.3390/nu11092252

Jia, X., Dini-Andreote, F., & Salles, J. F. (2018). Community assembly processes of the microbial rare biosphere. Trends in Microbiology, 26(9), 738-747. https://doi.org/10.1016/j.tim.2018.02.011

Wang, M., Veldsink, J. H., Dini-Andreote, F., & Salles, J. F. (2018). Compositional and abundance changes of nitrogen-cycling genes in plant-root microbiomes along a salt marsh chronosequence. Antonie Van Leeuwenhoek: International Journal of General and Molecular Microbiology, 111(11), 2061-2078. https://doi.org/10.1007/s10482-018-1098-5

Puentes-Tellez, P. E., & Salles, J. F. (2018). Construction of Effective Minimal Active Microbial Consortia for Lignocellulose Degradation. Microbial ecology, 76(2), 419-429. https://doi.org/10.1007/s00248-017-1141-5

Leite, D. C. A., Salles, J. F., Calderon, E. N., Castro, C. B., Bianchini, A., Marques, J. A., van Elsas, J. D., & Peixoto, R. S. (2018). Coral bacterial-core abundance and network complexity as proxies for anthropogenic pollution. Frontiers in Microbiology, 9, Article 833. https://doi.org/10.3389/fmicb.2018.00833

Dini-Andreote, F., van Elsas, J. D., Olff, H., & Salles, J. F. (2018). Dispersal-competition tradeoff in microbiomes in the quest for land colonization. Scientific Reports, 8(1), Article 9451. https://doi.org/10.1038/s41598-018-27783-6

Cortes-Tolalpa, L., Norder, J., van Elsas, J. D., & Falcao Salles, J. (2018). Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate. Applied Microbiology and Biotechnology, 2913-2927. https://doi.org/10.1007/s00253-017-8714-6

van Veelen, H. P. J., Salles, J. F., & Tieleman, B. I. (2018). Microbiome assembly of avian eggshells and their potential as transgenerational carriers of maternal microbiota. The ISME journal, 12(5), 1375-1388. https://doi.org/10.1038/s41396-018-0067-3

Mas-Carrio, E., Dini-Andreote, F., Brossi, M. J. D. L., Salles, J. F., & Olff, H. (2018). Organic amendment under increasing agricultural intensification: Effects on soil bacterial communities and plant productivity. Frontiers in Microbiology, 9, Article 2612. https://doi.org/10.3389/fmicb.2018.02612

Nunes, I., Jurburg, S., Jacquiod, S., Brejnrod, A., Salles, J. F., Prieme, A., & Sorensen, S. J. (2018). Soil bacteria show different tolerance ranges to an unprecedented disturbance. Biology and Fertility of Soils, 54(2), 189-202. https://doi.org/10.1007/s00374-017-1255-4

Leite, D. C. A., Salles, J. F., Calderon, E. N., van Elsas, J. D., & Peixoto, R. S. (2018). Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont. Ecology and Evolution, 8(3), 1818-1832. https://doi.org/10.1002/ece3.3717

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