Publications

2022

Bustamante Ordonez, M., van Doorn, S., Weissing, F., Daras, I., Kuipers, O., & de Vos, M. (2022). Eco-evolutionary interactions and the spread of antimicrobial resistance in pathogenic microbial communities. Poster session presented at Netherlands Society for Evolutionary Biology Meeting 2022, Ede, Netherlands.

Zandbergen, L., van den Heuvel, J., Zwaan, B., de Visser, A., & de Vos, M. (2022). Eco-evolutionary interactions in polymicrobial infections. Poster session presented at Netherlands Society for Evolutionary Biology Meeting 2022, Ede, Netherlands.

Dabral, D., Ghosh, H., Niwa, M., Hirayama, T., de Vos, M., & van den Bogaart, G. (2022). Iron regulates contrasting toxicity of uropathogenic Eschericia coli in macrophages and epithelial cells. (BioRxiv). BioRxiv. https://doi.org/10.1101/2022.05.29.493834

Melkonian, C., Seidl, M. F., van der Hooft, J. J. J., & de Vos, M. G. J. (2022). Metabolic interactions shape a community's phenotype. Trends in Microbiology, 30(7), 609-611. https://doi.org/10.1016/j.tim.2022.05.001

2021

Zandbergen, L., Brons, J., Halverson, T., Wolfe, A. J., & de Vos, M. (2021). The good and the bad: Ecological interaction measurements between the urinary microbiota and uropathogens. Frontiers in Microbiology, 12, Article 659450. https://doi.org/10.3389/fmicb.2021.659450

Lara, E. G., van der Windt, I., Molenaar, D., de Vos, M. G. J., & Melkonian, C. (2021). Using functional annotations to study pairwise interactions in urinary tract infection communities. Genes, 12(8), Article 1221. https://doi.org/10.3390/genes12081221

2020

Campos, A. C. C., Andrade, N. L., Couto, N., Mutters, N. T., de Vos, M., Rosa, A. C. P., Damasco, P. V., Foe, J. R. L. T., Friedrich, A. W., Flissikowska, M. A. C., & Rossen, J. W. A. (2020). Characterization of fosfomycin heteroresistance among multidrug-resistant Escherichia coli isolates from hospitalized patients in Rio de Janeiro, Brazil. Journal of Global Antimicrobial Resistance, 22, 584-593. https://doi.org/10.1016/j.jgar.2020.04.026

Brons, J., Vink, S. N., de Vos, M., Reuter, S., Dobrindt, U., & van Elsas, J. D. (2020). Fast identification of Escherichia coli in urinary tract infections using a virulence gene based PCR approach in a novel thermal cycler. Journal of microbiological methods, 169, Article 105799. https://doi.org/10.1016/j.mimet.2019.105799

Zandbergen, L., & de Vos, M. (2020). Polymicrobiële infecties: Invloeden van de ecologische gemeenschap op het verloop van infecties. Tijdschrift voor Infectieziekten, 15(6), 221-226. https://www.ariez.nl/wp-content/uploads/2020/12/TvI6_2020_art_Zandbergen.pdf

Nghe, P., de Vos, M., Kingma, E., Kogenaru, M., Poelwijk, F. J., Laan, L., & Tans, S. J. (2020). Predicting evolution using regulatory architecture. Annual Review of Biophysics, 49, 181–197. Article 49. https://doi.org/10.1146/annurev-biophys-070317-032939

2019

Andersen, S. B., Shapiro, B. J., Vandenbroucke-Grauls, C., & de Vos, M. G. J. (2019). Microbial evolutionary medicine: From theory to clinical practice. Lancet Infectious Diseases, 19(8), e273-e283. https://doi.org/10.1016/S1473-3099(19)30045-3

Zandbergen, L. (2019). Pathogen and non-pathogen interactions in urinary tract infections. Poster session presented at Netherlands Annual Ecology Meeting 2019, Lunteren, Netherlands.

2018

de Vos, M. G. J., Schoustra, S. E., & de Visser, J. A. G. M. (2018). Ecology dictates evolution? About the importance of genetic and ecological constraints in adaptation. EPL, 122(5), Article 58002. https://doi.org/10.1209/0295-5075/122/58002

de Vos, M. G. J., de Visser, J. A. G. M., Rossen, J. W. A., & Zwaan, B. J. (2018). Polymicrobiële infecties: Ecosystemen met bijzondere eigenschappen. Nederlands Tijdschrift voor Geneeskunde, 162, Article D2224. https://www.ntvg.nl/artikelen/polymicrobiele-infecties-ecosystemen-met-bijzondere-eigenschappen

2017

de Vos, M. G. J., Zagorski, M., McNally, A., & Bollenbach, T. (2017). Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections. Proceedings of the National Academy of Sciences of the United States of America, 114(40), 10666-10671. https://doi.org/10.1073/pnas.1713372114

2015

de Vos, M. G. J., Dawid, A., Sunderlikova, V., & Tans, S. J. (2015). Breaking evolutionary constraint with a tradeoff ratchet. Proceedings of the National Academy of Sciences of the United States of America, 112(48), 14906-14911. https://doi.org/10.1073/pnas.1510282112

2014

de Vos, M. G. J., & Bollenbach, T. (2014). Suppressive drug interactions between antifungals. Chemistry & Biology, 21(4), 439-440. https://doi.org/10.1016/j.chembiol.2014.04.004

2013

de Vos, M. G. J., Poelwijk, F. J., Battich, N., Ndika, J. D. T., & Tans, S. J. (2013). Environmental Dependence of Genetic Constraint. PLoS genetics, 9(6), Article 1003580. https://doi.org/10.1371/journal.pgen.1003580

de Vos, M. G. J., Poelwijk, F. J., & Tans, S. J. (2013). Optimality in evolution: New insights from synthetic biology. Current Opinion in Biotechnology, 24(4), 797-802. https://doi.org/10.1016/j.copbio.2013.04.008

2011

Poelwijk, F. J., Heyning, P. D., de Vos, M. G. J., Kiviet, D. J., & Tans, S. J. (2011). Optimality and evolution of transcriptionally regulated gene expression. BMC Systems Biology, 5, Article 128. https://doi.org/10.1186/1752-0509-5-128

Poelwijk, F. J., de Vos, M. G. J., & Tans, S. J. (2011). Tradeoffs and Optimality in the Evolution of Gene Regulation. Cell, 146(3), 462-470. https://doi.org/10.1016/j.cell.2011.06.035

2010

Dawid, A., Kiviet, D. J., Kogenaru, M., de Vos, M., & Tans, S. J. (2010). Multiple peaks and reciprocal sign epistasis in an empirically determined genotype-phenotype landscape. Chaos, 20(2), Article 026105. https://doi.org/10.1063/1.3453602

2009

Kogenaru, M., de Vos, M. G. J., & Tans, S. J. (2009). Revealing evolutionary pathways by fitness landscape reconstruction. Critical reviews in biochemistry and molecular biology, 44(4), 169-174. https://doi.org/10.1080/10409230903039658

2008

Coelho, M. R. R., de Vos, M., Carneiro, N. P., Marriel, I. E., Paiva, E., & Seldin, L. (2008). Diversity of nifH gene pools in the rhizosphere of two cultivars of sorghum (Sorghum bicolor) treated with contrasting levels of nitrogen fertilizer. FEMS Microbiology Letters, 279(1), 15-22. https://doi.org/10.1111/j.1574-6968.2007.00975.x

2006

Brouns, S. J. J., Walther, J., Snijders, A. P. L., de Werken, H. J. G. V., Willemen, H. L. D. M., Worm, P., de Vos, M. G. J., Andersson, A., Lundgren, M., Mazon, H. F. M., van den Heuvel, R. H. H., Nilsson, P., Salmon, L., de Vos, W. M., Wright, P. C., Bernander, R., & van der Oost, J. (2006). Identification of the missing links in prokaryotic pentose oxidation pathways: Evidence for enzyme recruitment. Journal of Biological Chemistry, 281(37), 27378-27388. https://doi.org/10.1074/jbc.M605549200

Snijders, A. P. L., Walther, J., Peter, S., Kinnman, I., de Vos, M. G. J., van de Werken, H. J. G., Brouns, S. J. J., van der Oost, J., & Wright, P. C. (2006). Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis. Proteomics, 6(5), 1518-1529. https://doi.org/10.1002/pmic.200402070

2005

Snijders, A. P. L., de Vos, M. G. J., de Koning, B., & Wright, P. C. (2005). A fast method for quantitative proteomics based on a combination between two-dimensional electrophoresis and ¹⁵N-metabolic labelling. Electrophoresis, 26(16), 3191-3199. https://doi.org/10.1002/elps.200500218

Snijders, A. P. L., de Vos, M. G. J., & Wright, P. C. (2005). Novel approach for peptide quantitation and sequencing based on ¹⁵N and ¹³C metabolic labeling. Journal of Proteome Research, 4(2), 578-585. https://doi.org/10.1021/pr0497733

Last modified:

09 June 2023 8.36 p.m.