prof. dr. S.J. (Siewert-Jan) Marrink

Professor Molecular Dynamics

prof. dr. S.J. (Siewert-Jan) Marrink
E-mail:
s.j.marrink rug.nl

Research

Research units:

Postal address:
Nijenborgh7
Gebouw 5171, ruimte 0804
9747 AG
Groningen
Netherlands
Phone: +31 50 363 4457Fax: +31 50 363 4381
  1. 2018
  2. Nedergaard Pedersen, J., Wilhelmus Johannes Maria Frederix, P., Skov Pedersen, J., Marrink, S. J., & Otzen, D. (2018). Role of charge and hydrophobicity in liprotide formation: A molecular dynamics study with experimental constraints. ChemBioChem, 19, 263–271. https://doi.org/10.1002/cbic.201700496
  3. 2017
  4. Kondela, T., Gallová, J., Hauß, T., Barnoud, J., Marrink, S-J., & Kučerka, N. (2017). Alcohol Interactions with Lipid Bilayers. Molecules, 22(12), [2078]. https://doi.org/10.3390/molecules22122078
  5. Ingólfsson, H. I., Carpenter, T. S., Bhatia, H., Bremer, P-T., Marrink, S. J., & Lightstone, F. C. (2017). Computational Lipidomics of the Neuronal Plasma Membrane. Biophysical Journal, 113(10), 2271-2280. [j.bpj.2017.10.017]. https://doi.org/10.1016/j.bpj.2017.10.017
  6. Venable, R. M., Ingólfsson, H. I., Lerner, M. G., Perrin, B. S., Camley, B. A., Marrink, S. J., ... Pastor, R. W. (2017). Lipid and Peptide Diffusion in Bilayers: The Saffman-Delbrück Model and Periodic Boundary Conditions. The Journal of Physical Chemistry B, 121(15), 3443–3457. [jpcb.6b09111]. https://doi.org/10.1021/acs.jpcb.6b09111
  7. van Eerden, F. J., van den Berg, T., Frederix, P. W. J. M., de Jong, D. H., Periole, X., & Marrink, S. J. (2017). Molecular Dynamics of Photosystem II Embedded in the Thylakoid Membrane. Journal of Physical Chemistry B., 121(15), 3237–3249. [jpcb.6b06865]. https://doi.org/10.1021/acs.jpcb.6b06865
  8. Arnarez, C., & Marrink, S. J. (2017). Computational microscopy of mitochondrial membranes. In Computer Design for New Drugs and Materials: Molecular Dynamics of Nanoscale Phenomena (pp. 1-20). Nova Science Publishers, Inc, Hauppauge, NY, USA.
  9. Maingi, V., Burns, J. R., Uusitalo, J. J., Howorka, S., Marrink, S. J., & Sansom, M. S. P. (2017). Stability and dynamics of membrane-spanning DNA nanopores. Nature Communications, 8, 1-12. [14784]. https://doi.org/10.1038/ncomms14784
  10. 2016
  11. Antillón, A., De Vries, A. H., Espinosa-caballero, M., Falcón-gonzález, J. M., Flores Romero, D., González–damián, J., ... Ortega-blake, I. (2016). An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety. PLoS ONE, 11(9), [e0162171]. https://doi.org/10.1371/journal.pone.0162171
  12. Baoukina, S., Ingolfsson, H. I., Marrink, S. J., & Tieleman, D. P. (2016). Curvature-Induced Lipid Sorting in Plasma Membrane Tethers. Biophysical Journal, 110(3, Suppl. 1), 580A-580A. https://doi.org/10.1016/j.bpj.2015.11.3101
  13. 2015
  14. Uytterhoeven, V., Lauwers, E., Maes, I., Miskiewicz, K., Melo, M. N., Swerts, J., ... Verstreken, P. (2015). Hsc70-4 Deforms Membranes to Promote Synaptic Protein Turnover by Endosomal Microautophagy. Neuron, 88(4), 735-748. https://doi.org/10.1016/j.neuron.2015.10.012
  15. Lopez, C. A., Bellesia, G., Redondo, A., Langan, P., Chundawat, S. P. S., Dale, B. E., ... Gnanakaran, S. (2015). MARTINI Coarse-Grained Model for Crystalline Cellulose Microfibers. The Journal of Physical Chemistry B, 119(2), 465-473. https://doi.org/10.1021/jp5105938

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