prof. dr. S.J. (Siewert-Jan) Marrink

Professor Molecular Dynamics

prof. dr. S.J. (Siewert-Jan) Marrink
E-mail:
s.j.marrink rug.nl

Research

Research units:

Postal address:
Nijenborgh7
Gebouw 5171, ruimte 0804
9747 AG
Groningen
Netherlands
Phone: +31 50 363 4457Fax: +31 50 363 4381
  1. 2021
  2. Grünewald, F., Kroon, P. C., Souza, P. C. T., & Marrink, S. J. (2021). Protocol for Simulations of PEGylated Proteins with Martini 3. In Y. W. Chen , & CP. B. Yiu (Eds.), Structural Genomics (pp. 315-335). (Methods in Molecular Biology; Vol. 2199). Humana Press. https://doi.org/10.1007/978-1-0716-0892-0_18
  3. 2020
  4. Buyan, A., Cox, C. D., Barnoud, J., Li, J., Chan, H. S. M., Martinac, B., Marrink, S. J., & Corry, B. (2020). Piezo1 Forms Specific, Functionally Important Interactions with Phosphoinositides and Cholesterol. Biophysical Journal, 119(8), 1683-1697. [j.bpj.2020.07.043]. https://doi.org/10.1016/j.bpj.2020.07.043
  5. Draper, E. R., Dietrich, B., McAuluy, K., Brasnett, C., Abdizadeh, H., Patmanidis, I., Marrink, S., Su, H., Cui, H., Schweins, R., Seddon, A., & Adams, D. J. (2020). Using Small-Angle Scattering and Contrast Matching to Understand Molecular Packing in Low Molecular Weight Gels. Matter, 2(3), 764-778. https://doi.org/10.1016/j.matt.2019.12.028
  6. 2019
  7. Marrink, S. J., Corradi, V., Souza, P. C. T., Ingólfsson, H. I., Tieleman, D. P., & Sansom, M. S. P. (2019). Computational Modeling of Realistic Cell Membranes. Chemical reviews, 119(9), 6184-6226. https://doi.org/10.1021/acs.chemrev.8b00460
  8. Corradi, V., Sejdiu, B. I., Mesa-Galloso, H., Abdizadeh, H., Noskov, S. Y., Marrink, S. J., & Tieleman, D. P. (2019). Emerging Diversity in Lipid-Protein Interactions. Chemical reviews, 119(9), 5775-5848. https://doi.org/10.1021/acs.chemrev.8b00451
  9. Dadsena, S., Bockelmann, S., Mina, J. G. M., Hassan, D. G., Korneev, S., Razzera, G., Jahn, H., Niekamp, P., Müller, D., Schneider, M., Tafesse, F. G., Marrink, S. J., Melo, M. N., & Holthuis, J. C. M. (2019). Ceramides bind VDAC2 to trigger mitochondrial apoptosis. Nature Communications, 10(1), [1832]. https://doi.org/10.1038/s41467-019-09654-4
  10. Thallmair, S., & Marrink, S. (2019). Chromophore arrangement in light-harvesting complex II influenced by the protein dynamics on the microsecond time scale. In XXI International Conference on Ultrafast Phenomena 2018 (UP 2018) (Vol. 205). [09039] (EPJ Web of Conferences). EPJ Web of Conferences. https://doi.org/10.1051/epjconf/201920509039
  11. Price, C. E., Branco Dos Santos, F., Hesseling, A., Uusitalo, J. J., Bachmann, H., Benavente, V., Goel, A., Berkhout, J., Bruggeman, F. J., Marrink, S-J., Montalban-Lopez, M., de Jong, A., Kok, J., Molenaar, D., Poolman, B., Teusink, B., & Kuipers, O. P. (2019). Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength. BMC Evolutionary Biology, 19(1), [15]. https://doi.org/10.1186/s12862-018-1331-x
  12. Bruininks, B. M. H., Souza, P. C. T., & Marrink, S. J. (2019). A Practical View of the Martini Force Field. In M. Bonomi, & C. Camilloni (Eds.), Biomolecular Simulations: Methods in Molecular Biology (pp. 105-127). (Methods in Molecular Biology; Vol. 2022). SPRINGER. https://doi.org/10.1007/978-1-4939-9608-7_5
  13. 2018
  14. Friedman, R., Khalid, S., Aponte-Santamaría, C., Arutyunova, E., Becker, M., Boyd, K. J., Christensen, M., Coimbra, J. T. S., Concilio, S., Daday, C., van Eerden, F. J., Fernandes, P. A., Gräter, F., Hakobyan, D., Heuer, A., Karathanou, K., Keller, F., Lemieux, M. J., Marrink, S. J., ... Domene, C. (2018). Understanding Conformational Dynamics of Complex Lipid Mixtures Relevant to Biology. Journal of membrane biology, 251(5-6), 609-631. https://doi.org/10.1007/s00232-018-0050-y
  15. Zhang, M., Peyear, T., Patmanidis, I., Greathouse, D. V., Marrink, S. J., Andersen, O. S., & Ingólfsson, H. I. (2018). Fluorinated Alcohols' Effects on Lipid Bilayer Properties. Biophysical Journal, 115(4), 679-689. https://doi.org/10.1016/j.bpj.2018.07.010
  16. Corradi, V., Mendez-Villuendas, E., Ingólfsson, H. I., Gu, R-X., Siuda, I., Melo, M. N., Moussatova, A., DeGagné, L. J., Sejdiu, B. I., Singh, G., Wassenaar, T. A., Delgado Magnero, K., Marrink, S. J., & Tieleman, D. P. (2018). Lipid-Protein Interactions Are Unique Fingerprints for Membrane Proteins. ACS central science, 4(6), 709-717. https://doi.org/10.1021/acscentsci.8b00143
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