prof. dr. R.C. (Ritsert) Jansen

Dean of Talent Development and Professor Bioinformatics

prof. dr. R.C. (Ritsert) Jansen
Telephone:
+31 50 36 38089 (Personal)
+31 50 36 36844 (Secretary)
E-mail:
r.c.jansen rug.nl

Research

  1. 2017
  2. 2015
  3. Prins, P., de Ligt, J., Tarasov, A., Jansen, R. C., Cuppen, E., & Bourne, P. E. (2015). Toward effective software solutions for big biology. Nature Biotechnology, 33(7), 686-687. https://doi.org/10.1038/nbt.3240
  4. Westra, H-J., Arends, D., Esko, T., Peters, M. J., Schurmann, C., Schramm, K., ... Franke, L. (2015). Cell Specific eQTL Analysis without Sorting Cells. PLoS genetics, 11(5), [1005223]. https://doi.org/10.1371/journal.pgen.1005223
  5. 2014
  6. Pino Del Carpio, D., Basnet, R. K., Arends, D., Lin, K., De Vos, R. C. H., Muth, D., ... Bonnema, G. (2014). Regulatory network of secondary metabolism in Brassica rapa: insight into the glucosinolate pathway. PLoS ONE, 9(9), [e107123]. https://doi.org/10.1371/journal.pone.0107123
  7. Rintisch, C., Heinig, M., Bauerfeind, A., Schafer, S., Mieth, C., Patone, G., ... Hubner, N. (2014). Natural variation of histone modification and its impact on gene expression in the rat genome. Genome Research, 24(6), 942-953. https://doi.org/10.1101/gr.169029.113
  8. Cortijo, S., Wardenaar, R., Colome-Tatche, M., Gilly, A., Etcheverry, M., Labadie, K., ... Johannes, F. (2014). Mapping the Epigenetic Basis of Complex Traits. Science, 343(6175), 1145-1148. https://doi.org/10.1126/science.1248127
  9. 2013
  10. Westra, H-J., Peters, M. J., Esko, T., Yaghootkar, H., Schurmann, C., Kettunen, J., ... Hoen, P. A. C. . (2013). Systematic identification of trans eQTLs as putative drivers of known disease associations. Nature Genetics, 45(10), 1238-1243. https://doi.org/10.1038/ng.2756
  11. Joosen, R. V. L., Arends, D., Li, Y., Willems, L. A. J., Keurentjes, J. J. B., Ligterink, W., ... Hilhorst, H. W. M. (2013). Identifying Genotype-by-Environment Interactions in the Metabolism of Germinating Arabidopsis Seeds Using Generalized Genetical Genomics. Plant Physiology, 162(2), 553-566. https://doi.org/10.1104/pp.113.216176
  12. 2012
  13. Neto, E. C., Keller, M. P., Broman, A. F., Attie, A. D., Jansen, R. C., Broman, K. W., & Yandell, B. S. (2012). Quantile-Based Permutation Thresholds for Quantitative Trait Loci Hotspots. Genetics, 191(4), 1355-1365. https://doi.org/10.1534/genetics.112.139451
  14. Diekstra, F. P., Saris, C. G. J., van Rheenen, W., Franke, L., Jansen, R. C., van Es, M. A., ... Brown Jr., R. H. (2012). Mapping of Gene Expression Reveals CYP27A1 as a Susceptibility Gene for Sporadic ALS. PLoS ONE, 7(4), [e35333]. https://doi.org/10.1371/journal.pone.0035333
  15. Demirkan, A., van Duijn, C. M., Ugocsai, P., Isaacs, A., Pramstaller, P. P., Liebisch, G., ... EUROSPAN Consortium (2012). Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations. PLoS genetics, 8(2), [e1002490]. https://doi.org/10.1371/journal.pgen.1002490
  16. Joosen, R. V. L., Arends, D., Willems, L. A. J., Ligterink, W., Jansen, R. C., & Hilhorst, H. W. M. (2012). Visualizing the Genetic Landscape of Arabidopsis Seed Performance. Plant Physiology, 158(2), 570-589. https://doi.org/10.1104/pp.111.186676
  17. 2011
  18. Roux, F., Colomé-Tatché, M., Edelist, C., Wardenaar, R., Guerche, P., Hospital, F., ... Johannes, F. (2011). Genome-Wide Epigenetic Perturbation Jump-Starts Patterns of Heritable Variation Found in Nature. Genetics, 188(4), 1015-1017. https://doi.org/10.1534/genetics.111.128744
  19. 2010
  20. Swertz, M. A., Dijkstra, M., Adamusiak, T., van der Velde, J. K., Kanterakis, A., Roos, E. T., ... Parkinson, H. (2010). The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button. Bmc Bioinformatics, 11 suppl 12 (S12), S12-1-S12-9. [12]. https://doi.org/10.1186/1471-2105-11-S12-S12
  21. Nieselt, K., Battke, F., Herbig, A., Bruheim, P., Wentzel, A., Jakobsen, O. M., ... Morrisey, E. R. (2010). The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11, [10]. https://doi.org/10.1186/1471-2164-11-10
  22. Swertz, M. A., van der Velde, K. J., Tesson, B. M., Scheltema, R. A., Arends, D., Vera, G., ... Genotype-To-Phenotype GEN2PHEN (2010). XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. Genome Biology, 11(3), R27-1-R27-15. [27]. https://doi.org/10.1186/gb-2010-11-3-r27
  23. 2009
  24. Scheltema, R. A., Decuypere, S., Dujardin, J. C., Watson, D. G., Jansen, R. C., & Breitling, R. (2009). Simple data-reduction method for high-resolution LC-MS data in metabolomics. Bioanalysis, 1(9), 1551-1557. https://doi.org/10.4155/BIO.09.146
  25. Jansen, R. C., Tesson, B. M., Fu, J., Yang, Y., McIntyre, L. M., & McInttyre, L. M. (2009). Defining gene and QTL networks. Current Opinion in Plant Biology, 12(2), 241-246. https://doi.org/10.1016/j.pbi.2009.01.003
  26. Fu, J., Keurentjes, J. J. B., Bouwmeester, H., America, T., Verstappen, F. W. A., Ward, J. L., ... Jansen, R. C. (2009). System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nature Genetics, 41(2), 166-167. https://doi.org/10.1038/ng.308
  27. Franke, L., & Jansen, R. C. (2009). eQTL Analysis in Humans. In K. DiPetrillo (Ed.), Cardiovascular Genomics. Methods and Protocols (573 ed., pp. 311-328). (Methods in Molecular Biology; No. 573).
  28. Tesson, B. M., & Jansen, R. C. (2009). eQTL Analysis in Mice and Rats. In K. DiPetrillo (Ed.), Cardiovascular Genomics. Methods and Protocols (573 ed., pp. 285-309). (Methods in Molecular Biology; No. 573).
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