dr. P.C. (Paulo) Telles de Souza

Guest Researcher

dr. P.C. (Paulo) Telles de Souza
p.c.telles.de.souza rug.nl


Research units:

Postal address:
9747 AG
Phone: +31 50 363 4323Fax: +31 50 363 4381
  1. 2021
  2. Grünewald, F., Kroon, P. C., Souza, P. C. T., & Marrink, S. J. (2021). Protocol for Simulations of PEGylated Proteins with Martini 3. In Y. W. Chen , & CP. B. Yiu (Eds.), Structural Genomics (pp. 315-335). (Methods in Molecular Biology; Vol. 2199). Humana Press. https://doi.org/10.1007/978-1-0716-0892-0_18
  3. 2020
  4. Heerdt, G., Zanotto, L., Souza, P. C. T., Araujo, G., & Skaf, M. S. (2020). Collision Cross Section Calculations Using HPCCS. In G. Paglia , & G. Astarita (Eds.), Ion Mobility-Mass Spectrometry (Vol. 2084, pp. 297-310). (Methods in Molecular Biology). Humana Press. https://doi.org/10.1007/978-1-0716-0030-6_19
  5. 2019
  6. Marrink, S. J., Corradi, V., Souza, P. C. T., Ingólfsson, H. I., Tieleman, D. P., & Sansom, M. S. P. (2019). Computational Modeling of Realistic Cell Membranes. Chemical reviews, 119(9), 6184-6226. https://doi.org/10.1021/acs.chemrev.8b00460
  7. Bruininks, B. M. H., Souza, P. C. T., & Marrink, S. J. (2019). A Practical View of the Martini Force Field. In M. Bonomi, & C. Camilloni (Eds.), Biomolecular Simulations: Methods in Molecular Biology (pp. 105-127). (Methods in Molecular Biology; Vol. 2022). SPRINGER. https://doi.org/10.1007/978-1-4939-9608-7_5
  8. 2018
  9. 2017
  10. Tose, L. V., Santos, N. A., Rodrigues, R. R. T., Murgu, M., Gomes, A. F., Vasconcelos, G. A., Souza, P. C. T., Vaz, B. G., & Romão, W. (2017). Isomeric separation of cannabinoids by UPLC combined with ionic mobility mass spectrometry (TWIM-MS)-Part I. International Journal of Mass Spectrometry, 418, 112-121. https://doi.org/10.1016/j.ijms.2016.10.018
  11. 2016
  12. 2015
  13. 2014
  14. de Souza, P. C. T., Puhl, A. C., Martinez, L., Aparicio, R., Nascimento, A. S., Figueira, A. C. M., Nguyen, P., Webb, P., Skaf, M. S., & Polikarpov, I. (2014). Identification of a New Hormone-Binding Site on the Surface of Thyroid Hormone Receptor. Molecular endocrinology, 28(4), 534-545. https://doi.org/10.1210/me.2013-1359
  15. 2013
  16. Bernardes, A., Telles de Souza, P. C., Muniz, J. R. C., Ricci, C. G., Ayers, S. D., Parekh, N. M., Godoy, A. S., Trivella, D. B. B., Reinach, P., Webb, P., Skaf, M. S., & Polikarpov, I. (2013). Molecular Mechanism of Peroxisome Proliferator-Activated Receptor alpha Activation by WY14643: a New Mode of Ligand Recognition and Receptor Stabilization. Journal of Molecular Biology, 425(16), 2878-2893. https://doi.org/10.1016/j.jmb.2013.05.010
  17. 2012
  18. Amato, A. A., Rajagopalan, S., Lin, J. Z., Carvalho, B. M., Figueira, A. C. M., Lu, J., Ayers, S. D., Mottin, M., Silveira, R. L., Telles de Souza, P., Mourao, R. H. V., Saad, M. J. A., Togashi, M., Simeoni, L. A., Abdalla, D. S. P., Skaf, M. S., Polikparpov, I., Lima, M. C. A., Galdino, S. L., ... Neves, F. A. R. (2012). GQ-16, a Novel Peroxisome Proliferator-activated Receptor gamma (PPAR gamma) Ligand, Promotes Insulin Sensitization without Weight Gain. The Journal of Biological Chemistry, 287(33), 28169-28179. https://doi.org/10.1074/jbc.M111.332106
  19. Liberato, M. V., Nascimento, A. S., Ayers, S. D., Lin, J. Z., Cvoro, A., Silveira, R. L., Martínez, L., Souza, P. C. T., Saidemberg, D., Deng, T., Amato, A. A., Togashi, M., Hsueh, W. A., Phillips, K., Palma, M. S., Neves, F. A. R., Skaf, M. S., Webb, P., & Polikarpov, I. (2012). Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) γ activators and pan-PPAR partial agonists. PLoS ONE, 7(5), [e36297]. https://doi.org/10.1371/journal.pone.0036297
  20. 2011
  21. Telles de Souza, P., Barra, G. B., Velasco, L. F. R., Ribeiro, I. C. J., Simeoni, L. A., Togashi, M., Webb, P., Neves, F. A. R., Skaf, M. S., Martinez, L., & Polikarpov, I. (2011). Helix 12 Dynamics and Thyroid Hormone Receptor Activity: Experimental and Molecular Dynamics Studies of Ile280 Mutants. Journal of Molecular Biology, 412(5), 882-893. https://doi.org/10.1016/j.jmb.2011.04.014
  22. Figueira, A. C. M., Saidemberg, D. M., Telles de Souza, P., Martínez, L., Scanlan, T. S., Baxter, J. D., Skaf, M. S., Palma, M. S., Webb, P. M., & Polikarpov, I. (2011). Analysis of Agonist and Antagonist Effects on Thyroid Hormone Receptor Conformation by Hydrogen/Deuterium Exchange. Molecular endocrinology, 25(1), 15-31. https://doi.org/10.1210/me.2010-0202
  23. 2010
  24. Martínez, L., Telles de Souza, P. C., Garcia, W., Batista, F. A. H., Portugal, R. V., Nascimento, A. S., Nakahira, M., Lima, L. M. T. R., Polikarpov, I., & Skaf, M. S. (2010). On the Denaturation Mechanisms of the Ligand Binding Domain of Thyroid Hormone Receptors. The Journal of Physical Chemistry. B: Materials, Surfaces, Interfaces, & Biophysical, 114(3), 1529-1540. https://doi.org/10.1021/jp911554p

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