M.J. Bonder

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E-mail:
m.j.bonder umcg.nl

Research

  1. 2021
  2. 2020
  3. BIOS Consortium, Ouwens, K. G., Jansen, R., Nivard, M. G., van Dongen, J., Frieser, M. J., Hottenga, J-J., Arindrarto, W., Claringbould, A., van Iterson, M., Mei, H., & Franke, L. (2020). A characterization of cis- and trans-heritability of RNA-Seq-based gene expression. European Journal of Human Genetics, 28(2), 253-263. https://doi.org/10.1038/s41431-019-0511-5
  4. 2019
  5. BIOS Consortium, van Dongen, J., Zilhao, N. R., Sugden, K., Hannon, E. J., Mill, J., Caspi, A., Agnew-Blais, J., Arseneault, L., Corcoran, D. L., Moffitt, T. E., Poulton, R., Franke, B., & Boomsma, D. (2019). Epigenome-wide Association Study of Attention-Deficit/Hyperactivity Disorder Symptoms in Adults. Biological Psychiatry, 86(8), 599-607. https://doi.org/10.1016/j.biopsych.2019.02.016
  6. Kurilshikov, A., van den Munckhof, I. C., Chen, L., Bonder, M. J., Schraa, K., Rutten, J., Riksen, N. P., de Graaf, J., Oosting, M., Sanna, S., Joosten, L. A., van der Graaf, M., Brand, T., Koonen, D. P., van Faassen, M. J., Slagboom, P. E., Xavier, R. J., Kuipers, F., Hofker, M., ... Fu, J. (2019). Gut Microbial Associations to Plasma Metabolites Linked to Cardiovascular Phenotypes and Risk: A Cross-Sectional Study. Circulation research, 124(12), 1808-1820. https://doi.org/10.1161/CIRCRESAHA.118.314642
  7. eQTLgen Consortium, Timmers, P. R., Mounier, N., Lall, K., Fischer, K., Ning, Z., Feng, X., Bretherick, A. D., & Clark, D. W. (2019). Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances. eLife, 8, [39856]. https://doi.org/10.7554/eLife.39856
  8. 2018
  9. Hrdlickova, B., Mulder, C. J., Malamut, G., Meresse, B., Platteel, M., Kamatani, Y., Ricaño-Ponce, I., van Wanrooij, R. L. J., Zorro, M. M., Jan Bonder, M., Gutierrez-Achury, J., Cellier, C., Zhernakova, A., Nijeboer, P., Galan, P., Withoff, S., Lathrop, M., Bouma, G., Xavier, R. J., ... Kumar, V. (2018). A locus at 7p14.3 predisposes to refractory celiac disease progression from celiac disease. European journal of gastroenterology & hepatology, 30(8), 828-837. https://doi.org/10.1097/MEG.0000000000001168
  10. Lifelines-DEEP Cohort Study, & BBMRI Metabolomics Consortium (2018). Microbial impact on plasma metabolites is linked to the cardiovascular risk and phenotypes. Atherosclerosis supplements, 32, 118-119.
  11. Xu, C-J., Söderhäll, C., Bustamante, M., Baïz, N., Gruzieva, O., Gehring, U., Mason, D., Chatzi, L., Basterrechea, M., Llop, S., Torrent, M., Forastiere, F., Fantini, M. P., Carlsen, K. C. L., Haahtela, T., Morin, A., Kerkhof, M., Merid, S. K., van Rijkom, B., ... BIOS Consortium (2018). DNA methylation in childhood asthma: an epigenome-wide meta-analysis. The Lancet. Respiratory Medicine, 6(5), 379-388. https://doi.org/10.1016/S2213-2600(18)30052-3
  12. 2017
  13. Linner, R. K., Marioni, R. E., Rietveld, C. A., Simpkin, A. J., Davies, N. M., Watanabe, K., Armstrong, N. J., Auro, K., Baumbach, C., Bonder, M. J., Buchwald, J., Fiorito, G., Ismail, K., Iurato, S., Joensuu, A., Karell, P., Kasela, S., Lahti, J., Mcrae, A. F., ... BIOS Consortium (2017). An epigenome-wide association study meta-analysis of educational attainment. Molecular Psychiatry, 22(12), 1680-1690. https://doi.org/10.1038/mp.2017.210
  14. van Dongen, J., Suderman, M., Sugden, K., Ismail, K., Mulder, R. H., Kupper, L. K., Bustamante, M., Alemany, S., Bonder, M. J., Parmar, P., Lowry, E., Jansen, R., Baselmans, B., Nivard, M., Corcoran, D., Poulton, R., Mill, J., Hannon, E., Arseneault, L., ... BIOS Consortium (2017). Epigenome-wide association study meta-analysis of aggressive behavior. Behavior Genetics, 47(6), 662-663.
  15. Mandaviya, P. R., Joehanes, R., Aissi, D., Kuehnel, B., Marioni, R. E., Truong, V., Stolk, L., Beekman, M., Bonder, M. J., Franke, L., Gieger, C., Huan, T., Ikram, M. A., Kunze, S., Liang, L., Lindemann, J., Liu, C., McRae, A. F., Mendelson, M. M., ... Charge Consortium Epigenetics Grp (2017). Genetically defined elevated homocysteine levels do not result in widespread changes of DNA methylation in leukocytes. PLoS ONE, 12(10), [e0182472]. https://doi.org/10.1371/journal.pone.0182472
  16. Wahl, S., Drong, A. W., Lehne, B., Loh, M., Scott, W. R., Kunze, S., Tsai, P-C., Ried, J. S., Zhang, W., Yang, Y., Tan, S., Fiorito, G., Franke, L., Guarrera, S., Kasela, S., Kriebel, J., Richmond, R. C., Adamo, M., Afzal, U., ... Chambers, J. C. (2017). Epigenome-wide association study of body mass index, and the adverse outcomes of adiposity. Nature, 541(81), 81-86. https://doi.org/10.1038/nature20784
  17. Xu, C-J., Bonder, M. J., Soderhall, C., Bustamante, M., Baiz, N., Gehring, U., Jankipersadsing, S. A., van der Vlies, P., van Diemen, C. C., van Rijkom, B., Just, J., Kull, I., Kere, J., Anto, J. M., Bousquet, J., Zhernakova, A., Wijmenga, C., Annesi-Maesano, I., Sunyer, J., ... Koppelman, G. H. (2017). The emerging landscape of dynamic DNA methylation in early childhood. BMC Genomics, 18(25), 25. https://doi.org/10.1186/s12864-016-3452-1
  18. Bonder, M. J., Luijk, R., Pital-Zhernakova, D., Moed, M., Deelen, P., Vermaat, M., van Iterson, M., van Dijk, F., van Galen, M., Bot, J., Slieker, R. C., Jhamai, P. M., Verbiest, M., Suchiman, H. E. D., Verkerk, M., van der Breggen, R., van Rooij, J., Lakenberg, N., Arindrarto, W., ... BIOS Consortium (2017). Disease variants alter transcription factor levels and methylation of their binding sites. Nature Genetics, 49(1), 131-138. https://doi.org/10.1038/ng.3721
  19. Pital-Zhernakova, D., Deelen, P., Vermaat, M., van Iterson, M., van Galen, M., Arindrarto, W., van 't Hof, P., Mei, H., van Dijk, F., Westra, H-J., Bonder, M. J., van Rooij, J., Verkerk, M., Jhamai, P. M., Moed, M., Kielbasa, S. M., Bot, J., Nooren, I., Pool, R., ... Franke, L. (2017). Identification of context-dependent expression quantitative trait loci in whole blood. Nature Genetics, 49(1), 139-145. https://doi.org/10.1038/ng.3737
  20. 2016
  21. Schirmer, M., Smeekens, S. P., Vlamakis, H., Jaeger, M., Oosting, M., Franzosa, E. A., ter Horst, R., Jansen, T., Jacobs, L., Bonder, M. J., Kurilshikov, A., Fu, J., Joosten, L. A. B., Zhernakova, A., Huttenhower, C., Wijmenga, C., Netea, M. G., & Xavier, R. J. (2016). Corrections: Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity (vol 167, pg 1125, 2016). Cell, 167(7), 1897. https://doi.org/10.1016/j.cell.2016.11.046
  22. Kassam, I., Qi, T., Lloyd-Jones, L., Holloway, A., Bonder, M. J., Henders, A. K., Martin, N. G., Powell, J. E., Franke, L., Montgomery, G. W., Visscher, P. M., & McRae, A. F. (2016). Evidence for mitochondrial genetic control of autosomal gene expression. Human Molecular Genetics, 25(24), 5332-5338. https://doi.org/10.1093/hmg/ddw347
  23. Barban, N., Jansen, R., de Vlaming, R., Vaez, A., Mandemakers, J. J., Tropf, F. C., Shen, X., Wilson, J. F., Chasman, D. I., Nolte, I. M., Tragante, V., van der Laan, S. W., Perry, J. R. B., Kong, A., Ahluwalia, T. S., Albrecht, E., Yerges-Armstrong, L., Atzmon, G., Auro, K., ... BIOS Consortium (2016). Genome-wide analysis identifies 12 loci influencing human reproductive behavior. Nature Genetics, 48(12), 1462-1472. https://doi.org/10.1038/ng.3698
  24. Schirmer, M., Smeekens, S. P., Vlamakis, H., Jaeger, M., Oosting, M., Franzosa, E. A., ter Horst, R., Jansen, T., Jacobs, L., Bonder, M. J., Kurilshchikov, A., Fu, J., Joosten, L. A. B., Zhernakova, A., Huttenhower, C., Wijmenga, C., Netea, M. G., & Xavier, R. J. (2016). Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity. Cell, 167(4), 1125-1136. https://doi.org/10.1016/j.cell.2016.10.020
  25. Bonder, M. J., Kurilshchikov, A., Tigchelaar-Feenstra, E., Mujagic, Z., Imhann, F., Vich Vila, A., Deelen, P., Vatanen, T., Schirmer, M., Smeekens, S. P., Zhernakova, D. V., Jankipersadsing, S. A., Jaeger, M., Oosting, M., Cenit, M. C., Masclee, A. A. M., Swertz, M. A., Li, Y., Kumar, V., ... Zhernakova, A. (2016). The effect of host genetics on the gut microbiome. Nature Genetics, 48(11), 1407-1412. https://doi.org/10.1038/ng.3663
  26. Slieker, R. C., van Iterson, M., Luijk, R., Beekman, M., Zhernakova, D. V., Moed, M. H., Mei, H., van Galen, M., Deelen, P., Bonder, M. J., Zhernakova, A., Uitterlinden, A. G., Tigchelaar, E. F., Stehouwer, C. D. A., Schalkwijk, C. G., van der Kallen, C. J. H., Hofman, A., van Heemst, D., de Geus, E. J., ... BIOS Consortium (2016). Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms. Genome Biology, 17, [191]. https://doi.org/10.1186/s13059-016-1053-6
  27. Dekkers, K. F., van Iterson, M., Slieker, R. C., Moed, M. H., Bonder, M. J., van Galen, M., Mei, H., Zhernakova, D. V., van den Berg, L. H., Deelen, J., van Dongen, J., van Heemst, D., Hofman, A., Hottenga, J. J., van der Kallen, C. J. H., Schalkwijk, C. G., Stehouwer, C. D. A., Tigchelaar, E. F., Uitterlinden, A. G., ... BIOS Consortium (2016). Blood lipids influence DNA methylation in circulating cells. Genome Biology, 17, [138]. https://doi.org/10.1186/s13059-016-1000-6
  28. Ligthart, S., Steenaard, R. V., Peters, M. J., van Meurs, J. B. J., Sijbrands, E. J. G., Uitterlinden, A. G., Bonder, M. J., Hofman, A., Franco, O. H., Dehghan, A., & BIOS Consortium (2016). Tobacco smoking is associated with DNA methylation of diabetes susceptibility genes. Diabetologia, 59(5), 998-1006. https://doi.org/10.1007/s00125-016-3872-0
  29. Zhernakova, A., Kurilshchikov, A., Bonder, M. J., Tigchelaar, E. F., Schirmer, M., Vatanen, T., Mujagic, Z., Vich Vila, A., Falony, G., Vieira-Silva, S., Wang, J., Imhann, F., Brandsma, E., Jankipersadsing, S. A., Joossens, M., Cenit, M. C., Deelen, P., Swertz, M. A., Weersma, R. K., ... Lifelines Cohort Study (2016). Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science, 352(6285), 565-569. https://doi.org/10.1126/science.aad3369
  30. Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K., Kurilshchikov, A., Bonder, M. J., Valles-Colomer, M., Vandeputte, D., Tito, R. Y., Chaffron, S., Rymenans, L., Verspecht, C., De Sutter, L., Lima-Mendez, G., D'hoe, K., Jonckheere, K., Homola, D., ... Raes, J. (2016). Population-level analysis of gut microbiome variation. Science, 352(6285), 560-564. https://doi.org/10.1126/science.aad3503
  31. Bonder, M. J., Tigchelaar, E. F., Cai, X., Trynka, G., Cenit, M. C., Hrdlickova, B., Zhong, H., Vatanen, T., Gevers, D., Wijmenga, C., Wang, Y., & Zhernakova, A. (2016). The influence of a short-term gluten-free diet on the human gut microbiome. Genome medicine, 8(45), [45]. https://doi.org/10.1186/s13073-016-0295-y
  32. 2015
  33. Kato, N., Loh, M., Takeuchi, F., Verweij, N., Wang, X., Zhang, W., Kelly, T. N., Saleheen, D., Lehne, B., Leach, I. M., Drong, A. W., Abbott, J., Wahl, S., Tan, S-T., Scott, W. R., Campanella, G., Chadeau-Hyam, M., Afzal, U., Ahluwalia, T. S., ... InterAct Consortium (2015). Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation. Nature Genetics, 47(11), 1282-1293.e2. https://doi.org/10.1038/ng.3405
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