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prof. dr. J.M. (Jan Maarten) van Dijl

Professor of Medical Microbiology

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  1. 2008
  2. Kouwen, T. R. H. M., Dubois, J-Y. F., Freudl, R., Quax, W. J., & van Dijl, J. M. (2008). Modulation of Thiol-Disulfide Oxidoreductases for Increased Production of Disulfide-Bond-Containing Proteins in Bacillus subtilis. Applied and environmental microbiology, 74(24), 7536-7545. https://doi.org/10.1128/AEM.00894-08
  3. Kolkman, M. A. B., van der Ploeg, R., Bertels, M., van Dijk, M., van der Laan, J., van Dijl, J. M., & Ferrari, E. (2008). The Twin-Arginine Signal Peptide of Bacillus subtilis YwbN Can Direct either Tat- or Sec-Dependent Secretion of Different Cargo Proteins: Secretion of Active Subtilisin via the B. subtilis Tat Pathway. Applied and environmental microbiology, 74(24), 7507-7513. https://doi.org/10.1128/AEM.01401-08
  4. Sabat, A. J., Wladyka, B., Kosowska-Shick, K., Grundmann, H., van Dijl, J. M., Kowal, J., ... Hryniewicz, W. (2008). Polymorphism, genetic exchange and intragenic recombination of the aureolysin gene among Staphylococcus aureus strains. BMC Microbiology, 8, [129]. https://doi.org/10.1186/1471-2180-8-129
  5. Westers, L., Westers, H., Zanen, G., Antelmann, H., Hecker, M., Noone, D., ... Quax, W. J. (2008). Genetic or chemical protease inhibition causes significant changes in the Bacillus subtilis exoproteome. Proteomics, 8(13), 2704-2713. https://doi.org/10.1002/pmic.200800009
  6. Kouwen, T. R. H. M., Andrell, J., Schrijver, R., Dubois, J-Y. F., Maher, M. J., Iwata, S., ... van Dijl, J. M. (2008). Thioredoxin A active-site mutants form mixed disulfide dimers that resemble enzyme-substrate reaction intermediates. Journal of Molecular Biology, 379(3), 520-534. https://doi.org/10.1016/j.jmb.2008.03.077
  7. Zweers, J. C., Barak, I., Becher, D., Driessen, A. J. M., Hecker, M., Kontinen, V. P., ... van Dijl, J. M. (2008). Towards the development of Bacillus subtilis as a cell factory for membrane proteins and protein complexes. Microbial Cell Factories, 7(10), [10]. https://doi.org/10.1186/1475-2859-7-10
  8. Widdick, D. A., Eijlander, R. T., van Dijl, J. M., Kuipers, O. P., & Palmer, T. (2008). A facile reporter system for the experimental identification of twin-arginine translocation (Tat) signal peptides from all kingdoms of life. Journal of Molecular Biology, 375(3), 595-603. https://doi.org/10.1016/j.jmb.2007.11.002
  9. Sibbald, M., & van Dijl, J. M. (2008). Secretome mapping in Gram-positive pathogens. In Bacterial protein secretion systems (pp. 185-215). horizon.
  10. 2007
  11. Meissner, D., Vollstedt, A., van Dijl, J. M., & Freudl, R. (2007). Comparative analysis of twin-arginine (Tat)-dependent protein secretion of a heterologous model protein (GFP) in three different Gram-positive bacteria. Applied Microbiology and Biotechnology, 76(3), 633-642. https://doi.org/10.1007/s00253-007-0934-8
  12. Kouwen, T. R. H. M., van der Goot, A., Dorenbos, R., Winter, T., Antelmann, H., Plaisier, M-C., ... Dubois, J-Y. F. (2007). Thiol-disulphide oxidoreductase modules in the low-GC Gram-positive bacteria (vol 64, pg 984, 2007). Molecular Microbiology, 64(5), 1417-1417. https://doi.org/10.1111/j.1365-2958.2007.05764.x
  13. Kouwen, T. R. H. M., van der Goot, A., Dorenbos, R., Winter, T., Antelmann, H., Plaisier, M-C., ... Dubois, J-Y. F. (2007). Thiol-disulphide oxidoreductase modules in the low-GC Gram-positive bacteria. Molecular Microbiology, 64(4), 984-999. https://doi.org/10.1111/j.1365-2958.2007.05707.x
  14. Wolff, S., Antelmann, H., Albrecht, D., Becher, D., Bernhardt, J., Bron, S., ... Hecker, M. (2007). Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences, 849(1-2), 129-140. https://doi.org/10.1016/j.jchromb.2006.09.029
  15. van Dijl, J. M., Buist, G., Sibbald, M., Zweers, J., Dubois, J., & Tjalsma, H. (2007). In's and out's of the Bacillus subtilis membrane proteome. In Bacillus: Cellular and Molecular Biology (pp. 287-330). Caister Academic Press.
  16. 2006
  17. Darmon, E., Dorenbos, R., Meens, J., Freudl, R., Antelmann, H., Hecker, M., ... van Dijl, J. M. (2006). A disulfide bond-containing alkaline phosphatase triggers a BdbC-dependent secretion stress response in Bacillus subtilis. Applied and environmental microbiology, 72(11), 6876-6885. https://doi.org/10.1128/AEM.01176-06
  18. Sibbald, M. J. J. B., Ziebandt, A. K., Engelmann, S., Hecker, M., de Jong, A., Harmsen, H. J. A., ... van Dijl, J. A. (2006). Mapping the Pathways to Staphylococcal Pathogenesis by Comparative Secretomics. Microbiology and Molecular Biology Reviews, 70(3), 755 - 788. https://doi.org/10.1128/MMBR.00008-06
  19. Westers, H., Westers, L., Darmon, E., van Dijl, J. M., Quax, W., & Zanen, G. (2006). The CssRS two-component regulatory system controls a general secretion stress response in Bacillus subtilis. Febs Journal, 273(16), 3816-3827. https://doi.org/10.1111/j.1742-4658.2006.05389.x
  20. Droge, M. J., Boersma, Y. L., Braun, P. G., Buining, R. J., Julsing, M. K., Selles, K. G. A., ... Quax, W. J. (2006). Phage display of an intracellular carboxylesterase of Bacillus subtilis: Comparison of sec and tat pathway export capabilities. Applied and environmental microbiology, 72(7), 4589-4595. https://doi.org/10.1128/AEM.02750-05
  21. Zanen, G., Antelmann, H., Meima, R., Jongbloed, JDH., Kolkman, M., Hecker, M., ... Quax, WJ. (2006). Proteomic dissection of potential signal recognition particle dependence in protein secretion by Bacillus subtilis. Proteomics, 6(12), 3636-3648. https://doi.org/10.1002/pmic.200500560
  22. Westers, L., Swaving Dijkstra, D., Westers, H., van Dijl, J. M., & Quax, W. (2006). Secretion of functional human interleukin-3 from Bacillus subtilis. Journal of Biotechnology, 123(2), 211-224. https://doi.org/10.1016/j.jbiotec.2005.11.007
  23. Jongbloed, JDH., van der Ploeg, R., & van Dijl, JM. (2006). Bifunctional TatA subunits in minimal Tat protein translocases. Trends in Microbiology, 14(1), 2-4. https://doi.org/10.1016/j.tim.2005.11.001
  24. Voigt, B., Schweder, T., Sibbald, MJJB., Albrecht, D., Ehrenreich, A., Bernhardt, J., ... Hecker, M. (2006). The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions. Proteomics, 6(1), 268-281. https://doi.org/10.1002/pmic.200500091
  25. Antelmann, H., van Dijl, J. M., Bron, S., & Hecker, M. (2006). A proteomic survey through the secretome of Bacillus subtilis. In I. Humphery‐Smith, & M. Hecker (Eds.), Microbial proteomics: functional biology of whole organisms (Vol. 1, pp. 179-208). Wiley. https://doi.org/10.1002/0471973165.ch12
  26. Antelmann, H., Van Dijl, J. M., Bron, S., & Hecker, M. (2006). Proteomic survey through secretome of Bacillus subtilis. Methods of biochemical analysis., 49, 179-208.
  27. 2005
  28. Tjalsma, H., & van Dijl, JM. (2005). Proteomics-based consensus prediction of protein retention in a bacterial membrane. Proteomics, 5(17), 4472-4482. https://doi.org/10.1002/pmic.200402080
  29. Zanen, G., Meima, R., Tjalsma, H., Jongbloed, JDH., Westers, H., Oudega, B., ... Houben, E. N. G. (2005). Signal peptide hydrophobicity is critical for early stages in protein export by Bacillus subtilis. Febs Journal, 272(18), 4617-4630. https://doi.org/10.1111/j.1742-4658.2005.04777.x
  30. Smits, W., Dubois, J-Y., Bron, S., van Dijl, J. M., & Kuipers, O. P. (2005). Tricksy business: Transcriptome analysis reveals the involvement of thioredoxin a in redox homeostasis, oxidative stress, sulfur metabolism, and cellular differentiation in Bacillus subtilis. Journal of Bacteriology, 187(12), 3921-3930. https://doi.org/10.1128/JB.187.12.3921-3930.2005
  31. Westers, H., Braun, PG., Westers, L., Antelmann, H., Hecker, M., Jongbloed, JDH., ... Quax, WJ. (2005). Genes involved in skfA killing factor production protect a Bacillus subtilis lipase against proteolysis. Applied and environmental microbiology, 71(4), 1899-1908. https://doi.org/10.1128/AEM.71.4.1899-1908.2005
  32. Dorenbos, R., van Dijl, J. M., & Quax, W. (2005). Thiol disulfide oxidoreductases in bacteria. In S. G. Pandai (Ed.), Recent Research Developments in Microbiology 9 (pp. 237 - 269). Kerala, India: Research Signpost.
  33. 2004
  34. Westers, H., Darmon, E., Zanen, G., Veening, J-W., Kuipers, O. P., Bron, S., ... Dijl, J. M. V. (2004). The Bacillus secretion stress response is an indicator for α-amylase production levels. Letters in Applied Microbiology, 39(1), 65-73. https://doi.org/10.1111/j.1472-765X.2004.01539.x
  35. Tjalsma, H., Antelmann, H., Jongbloed, J. D. H., Braun, P. G., Darmon, E., Dorenbos, R., ... van Dijl, J. M. (2004). Proteomics of protein secretion by Bacillus subtilis: Separating the "secrets" of the secretome. Microbiology and Molecular Biology Reviews, 68(2), 207-233. https://doi.org/10.1128/mmbr.68.2.207-233.2004
  36. Dubois, J-Y., Eschevins, C., Bron, S., Quax, W., & van Dijl, J. M. (2004). Modulation of the Thoredoxin Pathway. (Patent No. WO 2004/056987 A1).
  37. Meima, R., van Dijl, J. M., Holsappel, S., & Bron, S. (2004). Expression systems in Bacillus. In Protein expression technologies: current status and future trends (pp. 199-252). horizon.
  38. Zanen, G., Antelmann, H., Westers, H., Hecker, M., van Dijl, J. M., & Quax, W. (2004). FlhF, the third signal recognition particle-GTPase of Bacillus subtilis, is dispensable for protein secretion. Journal of Bacteriology, 186(17), 5956 - 5960. https://doi.org/10.1128/JB.186.17.5956-5960.2004
  39. Sarvas, M., Harwood, C. R., Bron, S., & van Dijl, J. M. (2004). Post-translocational folding of secretory proteins in Gram-positive bacteria. Biochimica et Biophysica Acta - Molecular Cell Research, 1694(1-3), 311 - 327. https://doi.org/10.1016/j.bbamcr.2004.04.009
  40. van Dijl, J. M., Tjalsma, H., Jongbloed, J., van Roosmalen, M., Dubois, J., & Bron, S. (2004). Signal peptidases of Bacillus subtilis. In The Handbook of Proteolytic Enzymes (second ed., pp. 1985-1988). Elsevier.
  41. Jongbloed, J. D. H., Grieger, U., Antelmann, H., Hecker, M., Nijland, R., Bron, S., & van Dijl, J. M. (2004). Two minimal Tat translocases in Bacillus. Molecular Microbiology, 54(5), 1319 - 1325. https://doi.org/10.1111/j.1365-2958.2004.04341.x
  42. van Roosmalen, M. L., Geukens, N., Jongbloed, J. D. H., Tjalsma, H., Dubois, J-Y., Bron, S., ... Anne, J. (2004). Type I signal peptidases of gram-positive bacteria. Biochimica et Biophysica Acta-Molecular Cell Research, 1694(1-3), 279 - 297. https://doi.org/10.1016/j.bbamcr.2004.05.006
  43. 2003
  44. Westers, H., Dorenbos, R., Dijl, J. M. V., Kabel, J., Flanagan, T., Devine, K. M., ... Quax, W. J. (2003). Genome engineering reveals large dispensable regions in Bacillus subtilis. Molecular Biology and Evolution, 20(12), 2076-2090. https://doi.org/10.1093/molbev/msg219
  45. Venema, R., Tjalsma, H., van Dijl, J. M., Leenhouts, K., Buist, G., & Venema, G. (2003). Active lipoprotein precursors in the gram-positive eubacterium Lactococcus lactis. The Journal of Biological Chemistry, 278(17), 14739 - 14746. https://doi.org/10.1074/jbc.M209857200
  46. Tjalsma, H., Bron, S., & van Dijl, J. M. (2003). Complementary impact of paralogous Oxa1-like proteins of Bacillus subtilis on post-translocational stages in protein secretion. The Journal of Biological Chemistry, 278(18), 15622 - 15632. https://doi.org/10.1074/jbc.M301205200
  47. Kobayashi, K., Ehrlich, S. D., Albertini, A., Amati, G., Andersen, K. K., Arnaud, M., ... Ishio, N. V. (2003). Essential Bacillus subtilis genes. Proceedings of the National Academy of Sciences of the United States of America, 100(8), 4678 - 4683. https://doi.org/10.1073/pnas.0730515100
  48. Meima, R., & van Dijl, J. M. (2003). Protein secretion in Gram-positive bacteria. In Protein secretion pathways in bacteria (pp. 271-296). Kluwer Academic Publishers.
  49. van Dijl, J. M., Tjalsma, H., Jongbloed, J. D. H., van Roosmalen, M. L., Dubois, J-Y., & Bron, S. (2003). Signal peptidases of Bacillus subtilis. UK: Academic Press.
  50. Antelmann, H., Darmon, E., Noone, D., Veening, J. W., Westers, H., Bron, S., ... van Dijl, J. M. (2003). The extracellular proteome of Bacillus subtilis under secretion stress conditions. Molecular Microbiology, 49(1), 143 - 156. https://doi.org/10.1046/j.1365-2958.2003.03565.x
  51. Antelmann, H., van Dijl, J. M., & Hecker, M. (2003). Towards a complete proteome of Bacillus subtilis: cytosolic, cell wall-associated and extracellular proteins. In Handbook of Proteomic Methods (pp. 357-374). Totowa, NJ: Humana Press. https://doi.org/10.1007/978-1-59259-414-6_25
  52. 2002
  53. Jongbloed, JDH., Antelmann, H., Hecker, M., Bron, S., Airaksinen, U., Pries, F., ... Braun, PG. (2002). Selective contribution of the twin-arginine translocation pathway to protein secretion in Bacillus subtilis. The Journal of Biological Chemistry, 277(46), 44068-44078. https://doi.org/10.1074/jbc.M203191200
  54. Darmon, E., Noone, D., Masson, A., Bron, S., Kuipers, O. P., Devine, K. M., & Dijl, J. M. V. (2002). A novel class of heat and secretion stress-responsive genes is controlled by the autoregulated CssRS two-component system of Bacillus subtilis. Journal of Bacteriology, 184(20), 5661-5671. https://doi.org/10.1128/JB.184.20.5661-5671.2002
  55. van Dijl, JM., Braun, PG., Robinson, C., Quax, WJ., Antelmann, H., Hecker, M., ... Jongbloed, JDH. (2002). Functional genomic analysis of the Bacillus subtilis Tat pathway for protein secretion. Journal of Biotechnology, 98(2-3), 243-254. [PII S0168-1656(02)00135-9].
  56. Dorenbos, R., Stein, T., Kabel, J., Bruand, C., Bolhuis, A., Bron, S., ... van Dijl, JM. (2002). Thiol-disulfide oxidoreductases are essential for the production of the lantibiotic sublancin 168. The Journal of Biological Chemistry, 277(19), 16682-16688. https://doi.org/10.1074/jbc.M201158200
  57. Meima, R., Eschevins, C., Fillinger, S., Bolhuis, A., Hamoen, LW., Dorenbos, R., ... Bron, S. (2002). The bdbDC operon of Bacillus subtilis encodes thiol-disulfide oxidoreductases required for competence development. The Journal of Biological Chemistry, 277(9), 6994-7001. https://doi.org/10.1074/jbc.M111380200
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