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prof. dr. J.M. (Jan Maarten) van Dijl

Professor of Medical Microbiology

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  1. 2019
  2. Zhao, X., Palma, L., Stobernack, T., Glasner, C., de Jong, A., Utari, P., ... van Dijl, J. M. (2019). Exoproteome heterogeneity among closely related Staphylococcus aureus t437 isolates and possible implications for virulence. Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.9b00179
  3. Denham, E. L., Piersma, S., Rinket, M., Reilman, E., de Goffau, M. C., & van Dijl, J. M. (2019). Differential expression of a prophage-encoded glycocin and its immunity protein suggests a mutualistic strategy of a phage and its host. Scientific Reports, 9(1), 2845. [2845]. https://doi.org/10.1038/s41598-019-39169-3
  4. Palma Medina, L. M., Becker, A-K., Michalik, S., Yedavally, H., Raineri, E. J. M., Hildebrandt, P., ... Völker, U. (2019). Metabolic cross-talk between human bronchial epithelial cells and internalized Staphylococcus aureus as a driver for infection. Molecular & Cellular Proteomics. https://doi.org/10.1074/mcp.RA118.001138
  5. Mekonnen, S. A., Palma Medina, L. M., Michalik, S., Loreti, M. G., Gesell Salazar, M., van Dijl, J. M., & Völker, U. (2019). Metabolic niche adaptation of community- and hospital-associated methicillin-resistant Staphylococcus aureus. Journal of proteomics, 193, 154-161. https://doi.org/10.1016/j.jprot.2018.10.005
  6. Zoller, S. D., Park, H. Y., Olafsen, T., Zamilpa, C., Burke, Z. D., Blumstein, G., ... Bernthal, N. M. (2019). Multimodal imaging guides surgical management in a preclinical spinal implant infection model. JCI Insight, 4(3). https://doi.org/10.1172/jci.insight.124813
  7. Espina, M. D. T., Gabarrini, G., Harmsen, H. J. M., Westra, J., van Winkelhoff, A. J., & van Dijl, J. M. (2019). Talk to your gut: The oral-gut microbiome axis and its immunomodulatory role in the etiology of rheumatoid arthritis. FEMS Microbiology Reviews, 43(1), 1-18. https://doi.org/10.1093/femsre/fuy035
  8. Aguilar Suarez, R., Stülke, J., & van Dijl, J. (2019). Less is more: towards a genome-reduced Bacillus cell factory for ‘difficult proteins’. ACS Synthetic Biology, 8(1), 99-108. https://doi.org/10.1021/acssynbio.8b00342
  9. 2018
  10. Bonn, F., Maaß, S., & van Dijl, J. M. (2018). Enrichment of Cell Surface-Associated Proteins in Gram-Positive Bacteria by Biotinylation or Trypsin Shaving for Mass Spectrometry Analysis. In D. Becher (Ed.), Microbial Proteomics (Vol. 1841, pp. 35-43). (Methods in Molecular Biology). Humana Press. https://doi.org/10.1007/978-1-4939-8695-8_4
  11. Gabarrini, G., Heida, R., van Ieperen, N., Curtis, M. A., van Winkelhoff, A. J., & van Dijl, J. M. (2018). Dropping anchor: Attachment of peptidylarginine deiminase via A-LPS to secreted outer membrane vesicles of Porphyromonas gingivalis. Scientific Reports, 8(1), [8949]. https://doi.org/10.1038/s41598-018-27223-5
  12. Gabarrini, G., Palma Medina, L. M., Stobernack, T., Prins, R. C., du Teil Espina, M., Kuipers, J., ... van Dijl, J. M. (2018). There's no place like OM: Vesicular sorting and secretion of the peptidylarginine deiminase of Porphyromonas gingivalis. Virulence, 9(1), 456-464. https://doi.org/10.1080/21505594.2017.1421827
  13. Gabarrini, G., Chlebowicz, M. A., Vega Quiroz, M. E., Veloo, A. C. M., Rossen, J. W. A., Harmsen, H. J. M., ... van Winkelhoff, A. J. (2018). Conserved Citrullinating Exoenzymes in Porphyromonas Species. Journal of Dental Research, 97(5), 556-562. https://doi.org/10.1177/0022034517747575
  14. Desmet, S., Nepal, S., van Dijl, J. M., Van Ranst, M., Chlebowicz, M. A., Rossen, J. W., ... Bathoorn, E. (2018). Antibiotic resistance plasmids cointegrated into a megaplasmid harbouring the blaOXA-427 carbapenemase gene. Antimicrobial Agents and Chemotherapy, 62(3), [e01448-17]. https://doi.org/10.1128/AAC.01448-17
  15. Romero Pastrana, F., Neef, J., Koedijk, D. G. A. M., De Graaf, D., Duipmans, J., Jonkman, M. F., ... Buist, G. (2018). Human antibody responses against non-covalently cell wall-bound Staphylococcus aureus proteins. Scientific Reports, 8(1), [3234]. https://doi.org/10.1038/s41598-018-21724-z
  16. Rosman, C. W. K., Romero Pastrana, F., Buist, G., Heuker, M., van Oosten, M., McNamara, J. O., ... van Dijl, J. M. (2018). Ex Vivo Tracer Efficacy in Optical Imaging of Staphylococcus Aureus Nuclease Activity. Scientific Reports, 8(1), [1305]. https://doi.org/10.1038/s41598-018-19289-y
  17. Pastrana, F. R., Thompson, J. M., Heuker, M., Hoekstra, H., Dillen, C. A., Ortines, R. V., ... van Dijl, J. M. (2018). Noninvasive optical and nuclear imaging of Staphylococcus-specific infection with a human monoclonal antibody-based probe. Virulence, 9(1), 262-272. https://doi.org/10.1080/21505594.2017.1403004
  18. Hoekstra, H., Romero Pastrana, F., Bonarius, H. P. J., van Kessel, K. P. M., Elsinga, G. S., Kooi, N., ... Buist, G. (2018). A human monoclonal antibody that specifically binds and inhibits the staphylococcal complement inhibitor protein SCIN. Virulence, 9(1), 70-82. https://doi.org/10.1080/21505594.2017.1294297
  19. Stobernack, T., du Teil Espina, M., Mulder, L. M., Palma Medina, L. M., Piebenga, D. R., Gabarrini, G., ... van Dijl, J. M. (2018). A Secreted Bacterial Peptidylarginine Deiminase Can Neutralize Human Innate Immune Defenses. Mbio, 9(5). https://doi.org/10.1128/mBio.01704-18
  20. Nepal, S., Bonn, F., Grasso, S., Stobernack, T., de Jong, A., Zhou, K., ... Bathoorn, E. (2018). An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae. Virulence, 9(1), 1377-1389. https://doi.org/10.1080/21505594.2018.1509666
  21. García-Pérez, A. N., de Jong, A., Junker, S., Becher, D., Chlebowicz, M. A., Duipmans, J. C., ... van Dijl, J. M. (2018). From the wound to the bench: exoproteome interplay between wound-colonizing Staphylococcus aureus strains and co-existing bacteria. Virulence, 9(1), 363-378. https://doi.org/10.1080/21505594.2017.1395129
  22. Nagel, A., Michalik, S., Debarbouille, M., Hertlein, T., Salazar, M. G., Rath, H., ... Maeder, U. (2018). Inhibition of Rho Activity Increases Expression of SaeRS-Dependent Virulence Factor Genes in Staphylococcus aureus, Showing a Link between Transcription Termination, Antibiotic Action, and Virulence. Mbio, 9(5), [ARTN e01332-18]. https://doi.org/10.1128/mBio.01332-18
  23. 2017
  24. Pastrana, F. R., Neef, J., van Dijl, J. M., & Buist, G. (2017). A Lactococcus lactis expression vector set with multiple affinity tags to facilitate isolation and direct labeling of heterologous secreted proteins. Applied Microbiology and Biotechnology, 101(22), 8139-8149. https://doi.org/10.1007/s00253-017-8524-x
  25. Amissah, N. A., Buultjens, A. H., Ablordey, A., van Dam, L., Opoku-Ware, A., Baines, S. L., ... Rossen, J. W. (2017). Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings. Frontiers in Microbiology, 8, [1906]. https://doi.org/10.3389/fmicb.2017.01906
  26. Glasner, C., de Goffau, M. C., van Timmeren, M. M., Schulze, M. L., Jansen, B., Tavakol, M., ... van Dijl, J. M. (2017). Genetic loci of Staphylococcus aureus associated with anti-neutrophil cytoplasmic autoantibody (ANCA)-associated vasculitides. Scientific Reports, 7(1), [12211]. https://doi.org/10.1038/s41598-017-12450-z
  27. Koedijk, D. G. A. M., Pastrana, F. R., Hoekstra, H., van den Berg, S., Back, J. W., Kerstholt, C., ... Buist, G. (2017). Differential epitope recognition in the immunodominant staphylococcal antigen A of Staphylococcus aureus by mouse versus human IgG antibodies. Scientific Reports, 7, [8141]. https://doi.org/10.1038/s41598-017-08182-9
  28. Amissah, N. A., van Dam, L., Ablordey, A., Ampomah, O-W., Prah, I., Tetteh, C. S., ... Stienstra, Y. (2017). Epidemiology of Staphylococcus aureus in a burn unit of a tertiary care center in Ghana. PLoS ONE, 12(7), [e0181072]. https://doi.org/10.1371/journal.pone.0181072
  29. Heuker, M., Sijbesma, J. W. A., Suárez, R. A., de Jong, J. R., Boersma, H. H., Luurtsema, G., ... van Oosten, M. (2017). In vitro imaging of bacteria using (18)F-fluorodeoxyglucose micro positron emission tomography. Scientific Reports, 7, [4973]. https://doi.org/10.1038/s41598-017-05403-z
  30. Bongiorni, C., Neef, J., Schmidt, B. F., van Kimmenade, A., & van Dijl, J. (2017). Enhanced protein production and methods thereof. (Patent No. WO2017112733).
  31. Amissah, N. A., Chlebowicz, M. A., Ablordey, A., Tetteh, C. S., Prah, I., van der Werf, T. S., ... Rossen, J. W. (2017). Virulence potential of Staphylococcus aureus isolates from Buruli ulcer patients. International journal of medical microbiology, 307(4-5), 223-232. https://doi.org/10.1016/j.ijmm.2017.04.002
  32. Mekonnen, S. A., Medina, L. M. P., Glasner, C., Tsompanidou, E., de Jong, A., Grasso, S., ... van Dijl, J. M. (2017). Signatures of cytoplasmic proteins in the exoproteome distinguish community-and hospital-associated methicillin-resistant Staphylococcus aureus USA300 lineages. Virulence, 8(6), 891-907. https://doi.org/10.1080/21505594.2017.1325064
  33. Neef, J., Bongiorni, C., Goosens, V. J., Schmidt, B., & van Dijl, J. M. (2017). Intramembrane protease RasP boosts protein production in Bacillus. Microbial Cell Factories, 16(57). https://doi.org/10.1186/s12934-017-0673-1
  34. Wang, Y., Thompson, J. M., Ashbaugh, A. G., Khodakivskyi, P., Budin, G., Sinisi, R., ... Miller, L. S. (2017). Preclinical Evaluation of Photoacoustic Imaging as a Novel Noninvasive Approach to Detect an Orthopaedic Implant Infection. The Journal of the American Academy of Orthopaedic Surgeons, 25, S7-S12. https://doi.org/10.5435/JAAOS-D-16-00630
  35. Goosens, V. J., & van Dijl, J. M. (2017). Twin-Arginine Protein Translocation. In F. Bagnoli, & R. Rappuoli (Eds.), Protein and Sugar Export and Assembly in Gram-positive Bacteria (Vol. 404, pp. 69-94). (Current Topics in Microbiology and Immunology; Vol. 404). SPRINGER-VERLAG BERLIN. https://doi.org/10.1007/82_2016_7
  36. 2016
  37. Stobernack, T., Glasner, C., Junker, S., Gabarrini, G., de Smit, M., de Jong, A., ... van Dijl, J. M. (2016). Extracellular Proteome and Citrullinome of the Oral Pathogen Porphyromonas gingivalis. Journal of Proteome Research, 15(12), 4532-4543. https://doi.org/10.1021/acs.jproteome.6b00634
  38. Yan, X., Li, Z., Chlebowicz, M. A., Tao, X., Ni, M., Hu, Y., ... Zhang, J. (2016). Genetic features of livestock-associated Staphylococcus aureus ST9 isolates from Chinese pigs that carry the lsa(E) gene for quinupristin/dalfopristin resistance. International journal of medical microbiology, 306(8), 722-729. https://doi.org/10.1016/j.ijmm.2016.08.001
  39. Mars, R. A. T., Nicolas, P., Denham, E. L., & van Dijl, J. M. (2016). Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression. Microbiology and Molecular Biology Reviews, 80(4), 1029-1057. https://doi.org/10.1128/MMBR.00026-16
  40. Chi Hai Vu, Kolata, J., Stentzel, S., Beyer, A., Salazar, M. G., Steil, L., ... Broeker, B. M. (2016). Adaptive immune response to lipoproteins of Staphylococcus aureus in healthy subjects. Proteomics, 16(20), 2667-2677. https://doi.org/10.1002/pmic.201600151
  41. Heuker, M., Gomes, A., van Dijl, J. M., van Dam, G. M., Friedrich, A. W., Sinha, B., & van Oosten, M. (2016). Preclinical studies and prospective clinical applications for bacteria-targeted imaging: the future is bright. Clinical and Translational Imaging, 4(4), 253-264. https://doi.org/10.1007/s40336-016-0190-y
  42. Bonn, F., Pane-Farre, J., Schlueter, R., Schaffer, M., Fuchs, S., Bernhardt, J., ... Becher, D. (2016). Global analysis of the impact of linezolid onto virulence factor production in S. aureus USA300. International journal of medical microbiology, 306(3), 131-140. https://doi.org/10.1016/j.ijmm.2016.02.004
  43. Iovino, F., Seinen, J., Henriques-Normark, B., & van Dijl, J. M. (2016). How Does Streptococcus pneumoniae Invade the Brain? Trends in Microbiology, 24(4), 307-315. https://doi.org/10.1016/j.tim.2015.12.012
  44. Maeder, U., Nicolas, P., Depke, M., Pane-Farre, J., Debarbouille, M., van der Kooi-Pol, M. M., ... van Dijl, J. M. (2016). Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions. PLoS genetics, 12(4), [e1005962]. https://doi.org/10.1371/journal.pgen.1005962
  45. Ploss, T. N., Reilman, E., Monteferrante, C. G., Denham, E. L., Piersma, S., Lingner, A., ... van Dijl, J. M. (2016). Homogeneity and heterogeneity in amylase production by Bacillus subtilis under different growth conditions. Microbial Cell Factories, 15(57), [57]. https://doi.org/10.1186/s12934-016-0455-1
  46. Yan, X., Schouls, L. M., Pluister, G. N., Tao, X., Yu, X., Yin, J., ... Grundmann, H. (2016). The population structure of Staphylococcus aureus in China and Europe assessed by multiple-locus variable number tandem repeat analysis; clues to geographical origins of emergence and dissemination. Clinical Microbiology and Infection, 22(1). https://doi.org/10.1016/j.cmi.2015.08.022
  47. Hohman, H-P., van Dijl, J., Krishnappa, L., & Pragai, Z. (2016). Host organisms: Bacillus subtilis. In Industrial Biotechnology: Microorganisms (Vol. 1, pp. 221-297). Weinheim, Germany: Wiley-VCH Verlag GmbH & Co. KGaA. https://doi.org/10.1002/9783527807796.ch7
  48. 2015
  49. Reilman, E., Hagting, J. G., Flipsen, T., Ulmer, H., & van Dijl, J. M. (2015). Towards an antimicrobial 'microglove'. Scientific Reports, 5, [16679]. https://doi.org/10.1038/srep16679
  50. van Oosten, M., Hahn, M., Crane, L. M. A., Pleijhuis, R. G., Francis, K. P., van Dijl, J. M., & van Dam, G. M. (2015). Targeted imaging of bacterial infections: advances, hurdles and hopes. FEMS Microbiology Reviews, 39(6), 892-916. https://doi.org/10.1093/femsre/fuv029
  51. De Gonzalo, C. V. G., Denham, E. L., Mars, R. A. T., Stuelke, J., van der Donk, W. A., & van Dijl, J. M. (2015). The Phosphoenolpyruvate: Sugar Phosphotransferase System Is Involved in Sensitivity to the Glucosylated Bacteriocin Sublancin. Antimicrobial Agents and Chemotherapy, 59(11), 6844-6854. https://doi.org/10.1128/AAC.01519-15
  52. Neef, J., Milder, F. J., Koedijk, D. G. A. M., Klaassens, M., Heezius, E. C., van Strijp, J. A. G., ... Buist, G. (2015). Versatile vector suite for the extracytoplasmic production and purification of heterologous His-tagged proteins in Lactococcus lactis. Applied Microbiology and Biotechnology, 99(21), 9037-9048. https://doi.org/10.1007/s00253-015-6778-8
  53. Goosens, V. J., De-San-Eustaquio-Campillo, A., Carballido-Lopez, R., & van Dijl, J. M. (2015). A Tat menage a trois - The role of Bacillus subtilis TatAc in twin-arginine protein translocation. Biochimica et Biophysica Acta - Molecular Cell Research, 1853(10), 2745-2753. https://doi.org/10.1016/j.bbamcr.2015.07.022
  54. Mars, R. A. T., Mendonca, K., Denham, E. L., & van Dijl, J. M. (2015). The reduction in small ribosomal subunit abundance in ethanol-stressed cells of Bacillus subtilis is mediated by a SigB-dependent antisense RNA. Biochimica et Biophysica Acta - Molecular Cell Research, 1853(10), 2553-2559. https://doi.org/10.1016/j.bbamcr.2015.06.009
  55. Gabarrini, G., de Smit, M., Westra, J., Brouwer, E., Vissink, A., Zhou, K., ... van Winkelhoff, A. J. (2015). The peptidylarginine deiminase gene is a conserved feature of Porphyromonas gingivalis. Scientific Reports, 5, [13936]. https://doi.org/10.1038/srep13936
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