Puertolas-Balint, F., Rossen, J. W. A., dos Santos, C. O., Chlebowicz, M. M. A., Raangs, E. C., van Putten, M. L., Sola-Campoy, P. J., Han, L., Schmidt, M., & Garcia-Cobos, S. (2019). Revealing the Virulence Potential o f Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing. Frontiers in Microbiology, 10, [1970]. https://doi.org/10.3389/fmicb.2019.01970

Lizarazo, E., Couto, N., Vincenti-Gonzalez, M., Raangs, E. C., Velasco, Z., Bethencourt, S., Jaenisch, T., Friedrich, A. W., Tami, A., & Rossen, J. W. (2019). Applied shotgun metagenomics approach for the genetic characterization of dengue viruses. Journal of Biotechnology: X, 2, [100009]. https://doi.org/10.1016/j.btecx.2019.100009

Couto, N., Schuele, L., Raangs, E. C., Machado, M. P., Mendes, C. I., Jesus, T. F., Chlebowicz, M., Rosema, S., Ramirez, M., Carriço, J. A., Autenrieth, I. B., Friedrich, A. W., Peter, S., & Rossen, J. W. (2019). Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens (vol 8, 13767, 2018). Scientific Reports, 9(1), [6406]. https://doi.org/10.1038/s41598-019-42134-9

Couto, N., Schuele, L., Raangs, E. C., Machado, M. P., Mendes, C. I., Jesus, T. F., Chlebowicz, M., Rosema, S., Ramirez, M., Carriço, J. A., Autenrieth, I. B., Friedrich, A. W., Peter, S., & Rossen, J. W. (2018). Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens. Scientific Reports, 8(1), [13767]. https://doi.org/10.1038/s41598-018-31873-w

Lizarazo, E., Couto, N., Vincenti-Gonzalez, M., Raangs, E. C., Jaenisch, T., Friedrich, A. W., Tami, A., & Rossen, J. W. (2018). Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics. Genome Announcements, 6(25), [UNSP e00545-18]. https://doi.org/10.1128/genomeA.00545-18

Couto, N., Chlebowicz, M. A., Raangs, E. C., Friedrich, A. W., & Rossen, J. W. (2018). Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics. Genome Announcements, 6(14), [e00036-18]. https://doi.org/10.1128/genomeA.00036-18

Gigliucci, F., von Meijenfeldt, F. A. B., Knijn, A., Michelacci, V., Scavia, G., Minelli, F., Dutilh, B. E., Ahmad, H. M., Raangs, G. C., Friedrich, A. W., Rossen, J. W. A., & Morabito, S. (2018). Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients. Frontiers in Cellular and Infection Microbiology, 8, [25]. https://doi.org/10.3389/fcimb.2018.00025

Peker, N., Rossen, J. W. A., Deurenberg, R. H., Langereis, P. C., Raangs, E. G. C., Kluytmans, J. A., Friedrich, A., Veenemans, J., & Sinha, B. (2018). Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis. Microorganisms, 6(1), [6]. https://doi.org/10.3390/microorganisms6010006

Lizarazo, E. F., Couto, N., Raangs, E., Vincenti-Gonzalez, M. F., Tovar, R., Bethencourt, S., Grobusch, M. P., Jaenisch, T., Friedrich, A., Tami, A., & Rossen, J. W. (2017). Shotgun metagenomics as a tool for the rapid diagnosis and genotyping of Dengue. Tropical Medicine & International Health, 22, 125.

Lizarazo, E. F., Couto, N., Raangs, E., Vincenti-Gonzalez, M. F., Tovar, R., Bethencourt, S., Grobusch, M. P., Jaenisch, T., Friedrich, A., Tami, A., & Rossen, W. (2017). Shotgun metagenomics as a tool for the rapid diagnosis and genotyping of Dengue. Tropical Medicine & International Health, 22, 5.

Deurenberg, R. H., Bathoorn, E., Chlebowicz, M. A., Monge Gomes do Couto, N., Ferdous, M., Garcia-Cobos, S., Kooistra-Smid, A. M. D., Raangs, E. C., Rosema, S., Veloo, A. C. M., Zhou, K., Friedrich, A. W., & Rossen, J. W. A. (2017). Reprint of "Application of next generation sequencing in clinical microbiology and infection prevention". Journal of Biotechnology, 250, 2-10. https://doi.org/10.1016/j.jbiotec.2017.03.035

Deurenberg, R. H., Bathoorn, E., Chlebowicz, M. A., Couto, N., Ferdous, M., Garcia-Cobos, S., Kooistra-Smid, A. M. D., Raangs, E. C., Rosema, S., Veloo, A. C. M., Zhou, K., Friedrich, A. W., & Rossen, J. W. A. (2017). Application of next generation sequencing in clinical microbiology and infection prevention. Journal of Biotechnology, 243, 16-24. https://doi.org/10.1016/j.jbiotec.2016.12.022

Zhou, K., Lokate, M., Deurenberg, R. H., Tepper, M., Arends, J. P., Raangs, E. G. C., Lo-Ten-Foe, J., Grundmann, H., Rossen, J. W. A., & Friedrich, A. W. (2016). Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum beta-lactamase producing ST15 Klebsiella pneumoniae. Scientific Reports, 6, [20840]. https://doi.org/10.1038/srep20840

Glasner, C., van Timmeren, M. M., Stobernack, T., Omansen, T. F., Raangs, G., Rossen, J. W., de Goffau, M. C., Arends, J. P., Kampinga, G. A., Koedijk, D., Neef, J., Buist, G., Tavakol, M., van Wamel, W. J. B., Rutgers, A., Stegeman, C. A., Kallenberg, C., Heeringa, P., & van Dijl, J. M. (2015). Low anti-staphylococcal IgG responses in granulomatosis with polyangiitis patients despite long-term Staphylococcus aureus exposure. Scientific Reports, 5, [8188]. https://doi.org/10.1038/srep08188

de Waal, Y. C. M., Winkel, E. G., Raangs, G. C., van der Vusse, M. L., Rossen, J. W. A., & van Winkelhoff, A. J. (2014). Changes in oral microflora after full-mouth tooth extraction: A prospective cohort study. Journal of Clinical Periodontology, 41(10), 981-989. https://doi.org/10.1111/jcpe.12297

Raangs, G. C., Winkel, E. G., & van Winkelhoff, A. J. (2014). Corrigendum: In vitro antimicrobial effects of two antihalitosis mouth rinses on oral pathogens and human tongue microbiota (vol 11, pg 203, 2013). International Journal of Dental Hygiene, 12(2). https://doi.org/10.1111/idh.12059

Rurenga, P., Raangs, E., Singadji, Z., Wekema - Mulder, G., Veloo, A. C. M., & van Winkelhoff, A. J. (2013). Evaluation of three selective media for isolation of Aggregatibacter actinomycetemcomitans. Journal of Periodontal Research, 48(5), 549-552. https://doi.org/10.1111/jre.12037

Raangs, G. C., Winkel, E. G., & van Winkelhoff, A. J. (2013). In vitro antimicrobial effects of two antihalitosis mouth rinses on oral pathogens and human tongue microbiota. International Journal of Dental Hygiene, 11(3), 203-207. https://doi.org/10.1111/idh.12014

Van Timmeren, M. M., Glasner, C., Stobernack, T., Omansen, T. F., Raangs, E. C., Rossen, J. W., Arends, J. P., Kampinga, G. A., Van Wamel, W. J. B., Rutgers, A., Stegeman, C. A., Kallenberg, C. G. M., Heeringa, P., & Van Dijl, J. M. (2013). High genetic diversity in nasal Staphylococcus aureus isolates from Granulomatosis with Polyangiitis (GPA) patients. Presse medicale, 42(4), 655-655. https://doi.org/10.1016/j.lpm.2013.02.012

Veloo, A. C. M., Seme, K., Raangs, G., Rurenga, P., Singadji, Z., Wekema - Mulder, G., & van Winkelhoff, A. J. (2012). Antibiotic susceptibility profiles of oral pathogens. International journal of antimicrobial agents, 40(5), 450-454. https://doi.org/10.1016/j.ijantimicag.2012.07.004

Momose, Y., Park, S-H., Niwa, H., Iwasaki, T., Maruyama, A., Raangs, G. C., Harmsen, H. J. M., Welling, G. W., & Itoh, K. (2011). Design and application of group-specific oligonucleotide probes for detecting and monitoring mouse clostridia. Laboratory Animals, 45(4), 259-267. https://doi.org/10.1258/la.2011.010136

He, T., Priebe, M. G., Zhong, Y., Huang, C., Harmsen, H. J. M., Raangs, G. C., Antoine, J. -M., Welling, G. W., & Vonk, R. J. (2008). Effects of yogurt and bifidobacteria supplementation on the colonic microbiota in lactose-intolerant subjects. Journal of Applied Microbiology, 104(2), 595-604. https://doi.org/10.1111/j.1365-2672.2007.03579.x

van Tongeren, S. P., Krooneman, J., Raangs, G. C., Welling, G. W., & Harmsen, H. J. M. (2007). Microbial detection and monitoring in advanced life support systems like the international space station. Microgravity science and technology, 19(2), 45-48. https://doi.org/10.1007/bf02911866

Sibbald, M. J. J. B., Ziebandt, A. K., Engelmann, S., Hecker, M., de Jong, A., Harmsen, H. J. A., Raangs, G. C., Stokroos, I., Arends, J. P., Dubois, J. Y. F., & van Dijl, J. A. (2006). Mapping the Pathways to Staphylococcal Pathogenesis by Comparative Secretomics. Microbiology and Molecular Biology Reviews, 70(3), 755 - 788. https://doi.org/10.1128/MMBR.00008-06

van Tongeren, S. P., Krooneman, J., Raangs, G. C., Welling, G. W., & Harmsen, H. J. M. (2006). Microbial detection and monitoring in advanced life support systems like the International Space Station. Microgravity science and technology, 18(3-4), 219-222. https://doi.org/10.1007/bf02870413

Harmsen, HJM., Raangs, GC., He, T., Degener, JE., & Welling, GW. (2002). Extensive set of 16S rRNA-based probes for detection of bacteria in human feces. Applied and environmental microbiology, 68(6), 2982-2990. https://doi.org/10.1128/AEM.68.6.2982-2990.2002

Welling, G., Veloo, A., Lemmers, N., Tian, R., Gao, Q., Raangs, G., Tonk, R., Jansen, G., Degener, J., & Harmsen, H. J. (2002). Fluorescent In situ Hybridization (FISH) as a tool in intestinal bacteriology: Review. Biosci Microflora, 20(4), 115-120.

van de Pas, BA., Harmsen, HJM., Raangs, GC., de Vos, WM., Schraa, G., & Stams, AJM. (2001). A Desulfitobacterium strain isolated from human feces that does not dechlorinate chloroethenes or chlorophenols (vol 175, pg 389, 2001). Archives of Microbiology, 176(5), 391-392. https://doi.org/10.1007/s002030100276

van de Pas, BA., Harmsen, HJM., Raangs, GC., de Vos, WM., Schraa, G., & Stams, AJM. (2001). A Desulfitobacterium strain isolated from human feces that does not dechlorinate chloroethenes or chlorophenols. Archives of Microbiology, 175(6), 389-394.

Harmsen, HJM., Gibson, GR., Elfferich, P., Raangs, GC., Wildeboer-Veloo, ACM., Argaiz, A., Roberfroid, MB., & Welling, GW. (2000). Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria. FEMS Microbiology Letters, 183(1), 125-129. https://doi.org/10.1016/S0378-1097(99)00649-7

Harmsen, HJM., Wildeboer-Veloo, ACM., Raangs, GC., Wagendorp, AA., Klijn, N., Bindels, JG., & Welling, GW. (2000). Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. Journal of Pediatric Gastroenterology and Nutrition, 30(1), 61-67.

Franks, AH., Harmsen, HJM., Raangs, GC., Jansen, GJ., Schut, F., & Welling, GW. (1998). Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-Targeted oligonucleotide probes. Applied and environmental microbiology, 64(9), 3336-3345.

Welling, GW., Elfferich, P., Raangs, GC., WildeboerVeloo, ACM., Jansen, GJ., & Degener, JE. (1997). 16S ribosomal RNA-targeted oligonucleotide probes for monitoring of intestinal tract bacteria. SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY, 32, 17-19. https://doi.org/10.1080/00365521.1997.11720711

Langendijk, P. S., Schut, F., Jansen, G. J., Raangs, G. C., Kamphuis, G. R., Wilkinson, M. H. F., & Welling, G. W. (1995). Quantitative Fluorescence In Situ Hybridization of Bifidobacterium spp. with Genus-Specific 16S rRNA-Targeted Probes and Its Application in Fecal Samples. Applied Environmental Microbiology, 61(8), 3069–3075. https://doi.org/10.1128/AEM.61.8.3069-3075.1995