prof. dr. E. (Eugene) Berezikov

Professor

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E-mail:
e.berezikov umcg.nl

Research

  1. 2012
  2. Kamminga, L. M., van Wolfswinkel, J. C., Luteijn, M. J., Kaaij, L. J. T., Bagijn, M. P., Sapetschnig, A., ... Ketting, R. F. (2012). Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans. PLoS genetics, 8(7), [e1002702]. https://doi.org/10.1371/journal.pgen.1002702
  3. Gommans, W. M., & Berezikov, E. (2012). Controlling miRNA regulation in disease. In J-B. Fan (Ed.), Next-Generation MicroRNA Expression Profiling Technology: Methods and Protocols (pp. 1-18). (Methods in Molecular Biology; Vol. 822). https://doi.org/10.1007/978-1-61779-427-8_1
  4. Gommans, W. M., & Berezikov, E. (2012). Sample preparation for small RNA massive parallel sequencing. In B. Deplancke, & N. Gheldof (Eds.), Gene Regulatory Networks: Methods and Protocols (pp. 167-178). (Methods in Molecular Biology; Vol. 786). https://doi.org/10.1007/978-1-61779-292-2_10
  5. 2011
  6. Poell, J. B., van Haastert, R. J., Cerisoli, F., Bolijn, A. S., Timmer, L. M., Diosdado-Calvo, B., ... Cuppen, E. (2011). Functional microRNA screening using a comprehensive lentiviral human microRNA expression library. BMC Genomics, 12, [546]. https://doi.org/10.1186/1471-2164-12-546
  7. Eacker, S. M., Keuss, M. J., Berezikov, E., Dawson, V. L., & Dawson, T. M. (2011). Neuronal Activity Regulates Hippocampal miRNA Expression. PLoS ONE, 6(10), [25068]. https://doi.org/10.1371/journal.pone.0025068
  8. Kuales, G., De Mulder, K., Glashauser, J., Salvenmoser, W., Takashima, S., Hartenstein, V., ... Ladurner, P. (2011). Boule-like genes regulate male and female gametogenesis in the flatworm Macrostomum lignano. Developmental Biology, 357(1), 117-132. https://doi.org/10.1016/j.ydbio.2011.06.030
  9. Huang, H. Y., Houwing, S., Kaaij, L. J. T., Meppelink, A., Redl, S., Gauci, S., ... Ketting, R. F. (2011). Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish. EMBO Journal, 30(16), 3298-3308. https://doi.org/10.1038/emboj.2011.228
  10. 2010
  11. Roy, S., Ernst, J., Kharchenko, P. V., Kheradpour, P., Negre, N., Eaton, M. L., ... Lowdon, R. F. (2010). Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science, 330(6012), 1787-1797. https://doi.org/10.1126/science.1198374
  12. Kamminga, L. M., Luteijn, M. J., Den Broeder, M. J., Redl, S., Kaaij, L. J. T., Roovers, E. F., ... Ketting, R. F. (2010). Hen1 is required for oocyte development and piRNA stability in zebrafish. EMBO Journal, 29(21), 3688-3700. https://doi.org/10.1038/emboj.2010.233
  13. Berezikov, E., Liu, N., Flynt, A. S., Hodges, E., Rooks, M., Hannon, G. J., & Lai, E. C. (2010). Evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nature Genetics, 42(1), 6-9. https://doi.org/10.1038/ng0110-6
  14. 2009
  15. van Wolfswinkel, J. C., Claycomb, J. M., Batista, P. J., Mello, C. C., Berezikov, E., & Ketting, R. F. (2009). CDE-1 Affects Chromosome Segregation through Uridylation of CSR-1-Bound siRNAs. Cell, 139(1), 135-148. https://doi.org/10.1016/j.cell.2009.09.012
  16. Lau, N. C., Robine, N., Martin, R., Chung, W. J., Niki, Y., Berezikov, E., & Lai, E. C. (2009). Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line. Genome Research, 19(10), 1776-1785. https://doi.org/10.1101/gr.094896.109
  17. 2008
  18. Berezikov, E., & Cuppen, E. (2008). MicroRNA Discovery and Expression Profiling using Next-Generation Sequencing. In Next Generation Genome Sequencing: Towards Personalized Medicine (pp. 217-228). Wiley-VCH Verlag GmbH & Co. KGaA. https://doi.org/10.1002/9783527625130.ch16
  19. Das, P. P., Bagijn, M. P., Goldstein, L. D., Woolford, J. R., Lehrbach, N. J., Sapetschnig, A., ... Miska, E. A. (2008). Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to Suppress Tc3 Transposon Mobility in the Caenorhabditis elegans Germline. Molecular Cell, 31(1), 79-90. https://doi.org/10.1016/j.molcel.2008.06.003
  20. Takada, S., Yamashita, Y., Berezikov, E., Hatanaka, H., Fujiwara, S. I., Kurashina, K., ... Mano, H. (2008). MicroRNA expression profiles of human leukemias. Leukemia, 22(6), 1274-1278. https://doi.org/10.1038/sj.leu.2405031
  21. 2007
  22. Aulchenko, Y. S., Pullen, J., Kloosterman, W. P., Yazdanpanah, M., Hofman, A., Vaessen, N., ... Van Duijn, C. M. (2007). LPIN2 is associated with type 2 diabetes, glucose metabolism, and body composition. Diabetes, 56(12), 3020-3026. https://doi.org/10.2337/db07-0338
  23. Berezikov, E., Chung, W. J., Willis, J., Cuppen, E., & Lai, E. C. (2007). Mammalian Mirtron Genes. Molecular Cell, 28(2), 328-336. https://doi.org/10.1016/j.molcel.2007.09.028
  24. Houwing, S., Kamminga, L. M., Berezikov, E., Cronembold, D., Girard, A., van den Elst, H., ... Ketting, R. F. (2007). A Role for Piwi and piRNAs in Germ Cell Maintenance and Transposon Silencing in Zebrafish. Cell, 129(1), 69-82. https://doi.org/10.1016/j.cell.2007.03.026
  25. Berezikov, E., Guryev, V., & Cuppen, E. (2007). Exploring conservation of transcription factor binding sites with CONREAL. In Comparative Genomics (Vol. 395, pp. 437-48)
  26. 2006
  27. Berezikov, E., Thuemmler, F., Van Laake, L. W., Kondova, I., Bontrop, R., Cuppen, E., & Plasterk, R. H. A. (2006). Diversity of microRNAs in human and chimpanzee brain. Nature Genetics, 38(12), 1375-1377. https://doi.org/10.1038/ng1914
  28. Takada, S., Berezikov, E., Yamashita, Y., Lagos-Quintana, M., Kloosterman, W. P., Enomoto, M., ... Mano, H. (2006). Mouse microRNA profiles determined with a new and sensitive cloning method. Nucleic Acids Research, 34(17), [e115]. https://doi.org/10.1093/nar/gkl653
  29. Berezikov, E., van Tetering, G., Verheul, M., van de Belt, J., van Laake, L., Vos, J., ... Cuppen, E. (2006). Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. Genome Research, 16(10), 1289-1298. https://doi.org/10.1101/gr.5159906
  30. Ason, B., Darnell, D. K., Wittbrodt, B., Berezikov, E., Kloosterman, W. P., Wittbrodt, J., ... Plasterk, R. H. A. (2006). Differences in vertebrate microRNA expression. Proceedings of the National Academy of Sciences of the United States of America, 103(39), 14385-14389. https://doi.org/10.1073/pnas.0603529103
  31. Berezikov, E., Cuppen, E., & Plasterk, R. H. A. (2006). Approaches to microRNA discovery. Nature Genetics, 38(SUPPL. 1), S2-S7. https://doi.org/10.1038/ng1794
  32. Guryev, V., Koudijs, M. J., Berezikov, E., Johnson, S. L., Plasterk, R. H. A., van Eeden, F. J. M., & Cuppen, E. (2006). Genetic variation in the zebrafish. Genome Research, 16(4), 491-7. https://doi.org/10.1101/gr.4791006
  33. Kloosterman, W. P., Steiner, F. A., Berezikov, E., de Bruijn, E., van de Belt, J., Verheul, M., ... Plasterk, R. H. A. (2006). Cloning and expression of new microRNAs from zebrafish. Nucleic Acids Research, 34(9), 2558-2569. https://doi.org/10.1093/nar/gkl278
  34. 2005
  35. Wienholds, E., Kloosterman, W. P., Miska, E., Alvarez-Saavedra, E., Berezikov, E., De Bruijn, E., ... Plasterk, R. H. A. (2005). Cell biology: MicroRNA expression in zebrafish embryonic development. Science, 309(5732), 310-311. https://doi.org/10.1126/science.1114519
  36. 2004
  37. Papusheva, E., Gruhl, M. C., Berezikov, E., Groudieva, T., Scherbik, S. V., Martin, J., ... Bergtrom, G. (2004). The evolution of SINEs and LINEs in the genus Chironomus (Diptera). Journal of Molecular Evolution, 58(3), 269-279. https://doi.org/10.1007/s00239-003-2549-8

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