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OnderzoekZernike (ZIAM)

Refereed academic publications of 2000

Molecular Dynamics
  1. Berendsen, H.J.C. & Hayward, S. Collective protein dynamics in relation to function. Current Opinion in Structural Biology 10 (2) 165-169 (2000)

  2. Bonvin, A.M.J.J., Mark, A.E. & Gunsteren, W.F.v. The GROMOS96 benchmarks for molecular simulation. Computer Physics Communications 128 (3) 550-557 (2000)

  3. Fioroni, M., Burger, K., Mark, A.E. & Roccatano, D. A new 2,2,2-trifluoroethanol model for molecular dynamics simulations. Journal of Physical Chemistry B 104 (51) 12347-12354 (2000)

  4. Forrest, L.R., Kukol, A., Arkin, I.T., Tieleman, D.P. & Sansom, M.S.P. Exploring models of the influenza A M2 channel: MD simulations in a phospholipid bilayer. Biophysical Journal 78 (1) 55-69 (2000)

  5. Hess, B. Similarities between principal components of protein dynamics and random diffusion. Physical Review E 62 (6) 8438-8448 (2000)

  6. Marrink, S.J., Tieleman, D.P. & Mark, A.E. Molecular dynamics simulation of the kinetics of spontaneous micelle formation. Journal of Physical Chemistry B 104 (51) 12165-12173 (2000)

  7. Michielsen, K.F.L., De Raedt, H. & Fraaije, J.G.E.M. Morphological characterization of spatial patterns. Progress of Theoretical Physics Supplement (138) 543-548 (2000)

  8. Schafer, H., Mark, A.E. & Gunsteren, W.F.v. Absolute entropies from molecular dynamics simulation trajectories. Journal of Chemical Physics 113 (18) 7809-7817 (2000)

  9. Tieleman, D.P., van der Spoel, D. & Berendsen, H.J.C. Molecular dynamics simulations of dodecylphosphocholine micelles at three different aggregate sizes: Micellar structure and chain relaxation. Journal of Physical Chemistry B 104 (27) 6380-6388 (2000)

  10. Walser, R., Mark, A.E. & Gunsteren, W.F.v. On the temperature and pressure dependence of a range of properties of a type of water model commonly used in high- temperature protein unfolding simulations. Biophysical Journal 78 (6) 2752-2760 (2000)

  11. Walser, R., Mark, A.E., Gunsteren, W.F.v., Lauterbach, M. & Wipff, G. The effect of force-field parameters on properties of liquids: Parametrization of a simple three-site model for methanol. Journal of Chemical Physics 112 (23) 10450-10459 (2000)

Last modified:22 October 2012 2.30 p.m.