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OnderzoekZernike (ZIAM)

Refereed academic publications of 1997

Molecular Dynamics
  1. Amadei, A., Apol, M.E.F. & Berendsen, H.J.C. Extensions of the quasi-Gaussian entropy theory. Journal of Chemical Physics 106 (5) 1893-1912 (1997)

  2. de Groot, B.L., van Aalten, D.M.F., Scheek, R.M., Amadei, A., Vriend, G. & Berendsen, H.J.C. Prediction of protein conformational freedom from distance constraints. Proteins-Structure Function and Genetics 29 (2) 240-251 (1997)

  3. Fraaije, J.G.E.M., van Vlimmeren, B.A.C., Maurits, N.M., Postma, M., Evers, O.A., Hoffmann, C., Altevogt, P. & Goldbeck-Wood.G. The dynamic mean-field density functional method and its application to the mesoscopic dynamics of quenched block copolymer melts. Journal of Chemical Physics 106 (10) 4260-4269 (1997)

  4. Hayward, S., Kitao, A. & Berendsen, H.J.C. Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme. Proteins-Structure Function and Genetics 27 (3) 425-437 (1997)

  5. Hess, B., Bekker, H., Berendsen, H.J.C. & Fraaije, J.G.E.M. LINCS: A linear constraint solver for molecular simulations. Journal of Computational Chemistry 18 (12) 1463-1472 (1997)

  6. Huetz, P., van Neuren, S., Ringler, P., Kremer, F., van Breemen, J.F.L., Wagenaar, A., Engberts, J.B.F.N., Fraaije, J.G.E.M. & Brisson, A. Relationship between molecular structure and supramolecular morphology of DODA-EO2-biotin and related lipids. Chemistry and Physics of Lipids 89 (1) 15-30 (1997)

  7. Kovacs, H., Mark, A.E. & Gunsteren, W.F.v. Solvent structure at a hydrophobic protein surface. Proteins-Structure Function and Genetics 27 (3) 395-404 (1997)

  8. Maurits, N.M. & Fraaije, J.G.E.M. Application of free energy expansions to mesoscopic dynamics of copolymer melts using a Gaussian chain molecular model. Journal of Chemical Physics 106 (16) 6730-6743 (1997)

  9. Maurits, N.M. & Fraaije, J.G.E.M. Mesoscopic dynamics of copolymer melts: From density dynamics to external potential dynamics using nonlocal kinetic coupling. Journal of Chemical Physics 107 (15) 5879-5889 (1997)

  10. Maurits, N.M., van Vlimmeren, B.A.C. & Fraaije, J.G.E.M. Mesoscopic phase separation dynamics of compressible copolymer melts. Physical Review E 56 (1) 816-825 (1997)

  11. Tieleman, D.P., Marrink, S.J. & Berendsen, H.J.C. A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems. Biochimica et Biophysica Acta-Reviews on Biomembranes 1331 (3) 235-270 (1997)

  12. van Aalten, D.M.F., de Groot, B.L., Findlay, J.B.C., Berendsen, H.J.C. & Amadei, A. A comparison of techniques for calculating protein essential dynamics. Journal of Computational Chemistry 18 (2) 169-181 (1997)

  13. van Aalten, D.M.F., Conn, D.A., de Groot, B.L., Berendsen, H.J.C., Findlay, J.B.C. & Amadei, A. Protein dynamics derived from clusters of crystal structures. Biophysical Journal 73 (6) 2891-2896 (1997)

  14. van der Spoel, D. & Berendsen, H.J.C. Molecular dynamics simulations of leu-enkephalin in water and DMSO. Biophysical Journal 72 (5) 2032-2041 (1997)

Last modified:22 October 2012 2.29 p.m.