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Research Zernike (ZIAM) Molecular Biophysics Cordes Group

Publications

2014

van der Velde, J, Oelerich, J, Huang, J, Smit, J, Hiermaier, M, Ploetz, E, Herrmann, A, Roelfes, G & Cordes, T 2014, 'The Power of Two: Covalent Coupling of Photostabilizers for Fluorescence Applications' The Journal of Physical Chemistry Letters, vol 5, no. 21, pp. 3792-3798., 10.1021/jz501874f

Hohlbein, J, Craggs, TD & Cordes, T 2014, 'Alternating-laser excitation: single-molecule FRET and beyond' Chemical Society Reviews, vol 43, no. 4, pp. 1156-1171., 10.1039/c3cs60233h

Ploetz, E, Visser, B, Slingenbergh, W, Evers, K, Martinez-Martinez, D, Pei, YT, Feringa, BL, De Hosson, JTM, Cordes, T & van Dorp, WF 2014, 'Selective functionalization of patterned glass surfaces' Journal of materials chemistry b, vol 2, no. 17, pp. 2606-2615., 10.1039/c3tb21763a

2013

van der Velde, JHM, Ploetz, E, Hiermaier, M, Oelerich, J, de Vries, J, Roelfes, J & Cordes, T 2013, 'Mechanism of Intramolecular Photostabilization in Self-Healing Cyanine Fluorophores' Chemphyschem, vol 14, no. 18, pp. 4084-4093., 10.1002/cphc.201300785

Cordes, T & Blum, SA 2013, 'Opportunities and challenges in single-molecule and single-particle fluorescence microscopy for mechanistic studies of chemical reactions' Nature Chemistry, vol 5, no. 12, pp. 993-999., 10.1038/NCHEM.1800

Robb, NC, Cordes, T, Hwang, LC, Gryte, K, Duchi, D, Craggs, TD, Santoso, Y, Weiss, S, Ebright, RH & Kapanidis, AN 2013, 'The Transcription Bubble of the RNA Polymerase-Promoter Open Complex Exhibits Conformational Heterogeneity and Millisecond-Scale Dynamics: Implications for Transcription Start-Site Selection' Journal of Molecular Biology, vol 425, no. 5, pp. 875-885., 10.1016/j.jmb.2012.12.015

Herzog, TT, Ryseck, G, Ploetz, E & Cordes, T 2013, 'The photochemical ring opening reaction of chromene as seen by transient absorption and fluorescence spectroscopy' Photochemical & Photobiological Sciences, vol 12, no. 7, pp. 1202-1209., 10.1039/c3pp50020a

2012

Slingenbergh, W, Boer, SKD, Cordes, T, Browne, WR, Feringa, BL, Hoogenboom, JP, Hosson, JTMD & Dorp, WFV 2012, 'Selective Functionalization of Tailored Nanostructures' Acs Nano, vol 6, no. 10, pp. 9214-9220., 10.1021/nn303571p

Tinnefeld, P & Cordes, T 2012, ''Self-healing' dyes: intramolecular stabilization of organic fluorophores' Nature Methods, vol 9, no. 5, pp. 426-427., 10.1038/nmeth.1977

Regner, N, Herzog, TT, Haiser, K, Hoppmann, C, Beyermann, M, Sauermann, J, Engelhard, M, Cordes, T, Rueck-Braun, K, Zinth, W & Rück-Braun, K 2012, 'Light-Switchable Hemithioindigo-Hemistilbene-Containing Peptides: Ultrafast Spectroscopy of the Z -> E Isomerization of the Chromophore and the Structural Dynamics of the Peptide Moiety' Journal of Physical Chemistry B, vol 116, no. 14, pp. 4181-4191., 10.1021/jp300982a

Stein, IH, Capone, S, Smit, JH, Baumann, F, Cordes, T & Tinnefeld, P 2012, 'Linking Single-Molecule Blinking to Chromophore Structure and Redox Potentials' Chemphyschem, vol 13, no. 4, pp. 931-937., 10.1002/cphc.201100820

Tinnefeld, P & Cordes, T 2012, '‘Self-healing’ dyes: intramolecular stabilization of organic fluorophores' Nature Methods, vol 9, no. 5, pp. 426-427.

2011

Schrader, TE, Cordes, T, Schreier, WJ, Koller, FO, Dong, S-L, Moroder, L & Zinth, W 2011, 'Folding and Unfolding of Light-Triggered beta-Hairpin Model Peptides' The Journal of Physical Chemistry B, vol 115, no. 18, pp. 5219-5226., 10.1021/jp107683d

Cordes, T, Maiser, A, Steinhauer, C, Schermelleh, L & Tinnefeld, P 2011, 'Mechanisms and advancement of antifading agents for fluorescence microscopy and single-molecule spectroscopy' Physical Chemistry Chemical Physics, vol 13, no. 14, pp. 6699-6709., 10.1039/c0cp01919d

Gryte, K, Cordes, T, Tomescu, A, Hwang, L & Kapanidis, A 2011, 'Real-Time Initial Transcription by a Multisubunit RNA Polymerase' Biophysical Journal, vol 100, no. 3, pp. 65a-65a., 10.1016/j.bpj.2010.12.554

2010

Cordes, T, Vogelsang, J, Anaya, M, Spagnuolo, C, Gietl, A, Summerer, W, Herrmann, A, Muellen, K, Tinnefeld, P & Müllen, K 2010, 'Single-Molecule Redox Blinking of Perylene Diimide Derivatives in Water' Journal of the American Chemical Society, vol 132, no. 7, pp. 2404-2409., 10.1021/ja9099714

Vogelsang, J, Cordes, T, Forthmann, C, Steinhauer, C & Tinnefeld, P 2010, 'Intrinsically Resolution Enhancing Probes for Confocal Microscopy' Nano Letters, vol 10, no. 2, pp. 672-679., 10.1021/nl903823s

Vogelsang, J, Steinhauer, C, Forthmann, C, Stein, IH, Person-Skegro, B, Cordes, T & Tinnefeld, P 2010, 'Make them Blink: Probes for Super-Resolution Microscopy' Chemphyschem, vol 11, no. 12, pp. 2475-2490., 10.1002/cphc.201000189

Nenov, A, Cordes, T, Herzog, TT, Zinth, W & Vivie-Riedle, RD 2010, 'Molecular Driving Forces for Z/E Isomerization Mediated by Heteroatoms: The Example Hemithioindigo' The Journal of Physical Chemistry A, vol 114, no. 50, pp. 13016-13030., 10.1021/jp107899g

Cordes, T, Strackharn, M, Stahl, SW, Summerer, W, Steinhauer, C, Forthmann, C, Puchner, EM, Vogelsang, J, Gaub, HE & Tinnefeld, P 2010, 'Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy' Nano Letters, vol 10, no. 2, pp. 645-651., 10.1021/nl903730r

Cordes, T, Santoso, Y, Tomescu, AI, Gryte, K, Hwang, LC, Camará, B, Wigneshweraraj, S & Kapanidis, AN 2010, 'Sensing DNA Opening in Transcription Using Quenchable Förster Resonance Energy Transfer' Biochemistry, vol 49, no. 43, pp. 9171-9180., 10.1021/bi101184g

2009

Vogelsang, J, Cordes, T, Forthmann, C, Steinhauer, C, Tinnefeld, P & Barbara, PF (ed.) 2009, 'Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy' Proceedings of the National Academy of Sciences of the United States of America, vol 106, no. 20, pp. 8107-8112., 10.1073/pnas.0811875106

Root, C, Lederer, FJ, Schrader, TE, Herzog, TT, Cordes, T, Gilch, P, Braun, M & Elsässer, T (ed.) 2009, 'Excitation wavelength dependent pump–probe signatures of molecular crystals' Applied Physics A: Materials Science & Processing, vol 96, no. 1, pp. 99-106., 10.1007/s00339-009-5169-3

Cordes, T, Vogelsang, J & Tinnefeld, P 2009, 'On the Mechanism of Trolox as Antiblinking and Antibleaching Reagent' Journal of the American Chemical Society, vol 131, no. 14, pp. 5018-5019., 10.1021/ja809117z

Elsner, C, Cordes, T, Dietrich, P, Zastrow, M, Herzog, TT, Rück-Braun, K & Zinth, W 2009, 'Photochromic Bis(thiophen-3-yl)maleimides Studied with Time-Resolved Spectroscopy' The Journal of Physical Chemistry A, vol 113, no. 6, pp. 1033-1039., 10.1021/jp806945m

Vogelsang, J, Cordes, T & Tinnefeld, P 2009, 'Single-molecule photophysics of oxazines on DNA and its application in a FRET switch' Photochemical & Photobiological Sciences, vol 8, no. 4, pp. 486-496., 10.1039/b822318c

Böttcher, C, Zeyat, G, Ahmed, SA, Irran, E, Cordes, T, Elsner, C, Zinth, W & Rueck-Braun, K 2009, 'Synthesis of novel photochromic pyrans via palladium-mediated reactions' Beilstein Journal of Organic Chemistry, vol 5, pp. 25-1-25-7., 10.3762/bjoc.5.25

Cordes, T, Regner, N, Heinz, B, Borysova, E, Ryseck, G & Gilch, P 2009, 'The complex photo-rearrangement of a heterocyclic N-oxide: Kinetics from picoseconds to minutes' Journal of Photochemistry and Photobiology A: Chemistry, vol 206, no. 1, pp. 10-17., 10.1016/j.jphotochem.2009.05.015

Cordes, T, Elsner, C, Herzog, TT, Hoppmann, C, Schadendorf, T, Summerer, W, Rück-Braun, K & Zinth, W 2009, 'Ultrafast Hemithioindigo-based peptide-switches' Chemical Physics, vol 358, no. 1, pp. 103-110., 10.1016/j.chemphys.2008.12.027

Cordes, T, Herzog, TT, Malkmus, S, Draxler, S, Brust, T, DiGirolamo, JA, Lees, WJ & Braun, M 2009, 'Wavelength and solvent independent photochemistry: the electrocyclic ring-closure of indolylfulgides' Photochemical & Photobiological Sciences, vol 8, no. 4, pp. 528-534., 10.1039/b817627b

2008

Cordes, T, Malkmus, S, DiGirolamo, JA, Lees, WJ, Nenov, A, Vivie-Riedle, RD, Braun, M & Zinth, W 2008, 'Accelerated and Efficient Photochemistry from Higher Excited Electronic States in Fulgide Molecules' The Journal of Physical Chemistry A, vol 112, no. 51, pp. 13364-13371., 10.1021/jp807097w

Cordes, T, Schadendorf, T, Rück-Braun, K & Zinth, W 2008, 'Chemical control of Hemithioindigo-photoisomerization – Substituent-effects on different molecular parts' Chemical Physics Letters, vol 455, no. 4, pp. 197-201., 10.1016/j.cplett.2008.02.096

Cordes, T, Schadendorf, T, Priewisch, B, Rück-Braun, K & Zinth, W 2008, 'The Hammett Relationship and Reactions in the Excited Electronic State: Hemithioindigo Z/E-Photoisomerization' The Journal of Physical Chemistry A, vol 112, no. 4, pp. 581-588., 10.1021/jp077472l

2007

Cordes, T, Riesselmann, K, Herre, S, Rück-Braun, K & Zinth, W 2007, 'A New Class of Ultrafast Photoswitchable Chromopeptides'. in P Corkum, DM Jonas, RJD Miller & AM Weiner (eds), Ultrafast Phenomena XV. 88 edn, University of Groningen, The Zernike Institute for Advanced Materials, Berlin, Heidelberg, New York, pp. 543-545, 15th International Conference on Ultrafast Phenomena, Pacific Grove, CA, USA, 30-4 August.

Schrader, TE, Schreier, WJ, Cordes, T, Koller, FO, Babitzki, G, Denschlag, R, Renner, C, Löweneck, M, Dong, S-L, Moroder, L, Tavan, P & Zinth, W 2007, 'Light-triggered β-hairpin folding and unfolding' Proceedings of the National Academy of Sciences of the United States of America, vol 104, no. 40, pp. 15729-15734., 10.1073pnas.0707322104

Cordes, T, Heinz, B, Regner, N, Hoppmann, C, Schrader, TE, Summerer, W, Rück-Braun, K & Zinth, W 2007, 'Photochemical Z→E Isomerization of a Hemithioindigo/Hemistilbene ω-Amino Acid' Chemphyschem, vol 8, no. 11, pp. 1713-1721., 10.1002/cphc.200700223

Koller, FO, Sobotta, C, Schrader, TE, Cordes, T, Schreier, WJ, Sieg, A & Gilch, P 2007, 'Slower processes of the ultrafast photo-isomerization of an azobenzene observed by IR spectroscopy' Chemical Physics, vol 341, no. 1, pp. 258-266., 10.1016/j.chemphys.2007.06.048

Zinth, W, Schrader, TE, Schreier, WJ, Koller, FO, Cordes, T, Babitzki, G, Denschlag, R, Tavan, P, Löweneck, M, Dong, S-L, Moroder, L & Renner, C 2007, 'Ultrafast Unzipping of a Beta-Hairpin Peptide'. in P Corkum, DM Jonas, RJD Miller & AM Weiner (eds), Ultrafast Phenomena XV. 88 edn, University of Groningen, The Zernike Institute for Advanced Materials, Berlin, Heidelberg, New York, pp. 498-500, 15th International Conference on Ultrafast Phenomena, Pacific Grove, CA, USA, 30-4 August.

2006

Cordes, T, Weinrich, D, Kempa, S, Riesselmann, K, Herre, S, Hoppmann, C, Rück-Braun, K & Zinth, W 2006, 'Hemithioindigo-based photoswitches as ultrafast light trigger in chromopeptides' Chemical Physics Letters, vol 428, no. 1, pp. 167-173.

2004

Baars-Hibbe, L, Schrader, C, Sichler, P, Cordes, T, Gericke, K-H, Büttgenbach, S & Draeger, S 2004, 'Micro-structured electrode arrays: high-frequency discharges at atmospheric pressure—characterization and new applications' Vacuum, vol 73, no. 3, pp. 327-332., 10.1016/j.vacuum.2003.12.107

Last modified:30 November 2015 4.26 p.m.