Publication

Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes

Garbeva, P., van Veen, JA. & van Elsas, JD., 15-Jan-2004, In : FEMS Microbial Ecology. 47, 1, p. 51-64 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

APA

Garbeva, P., van Veen, JA., & van Elsas, JD. (2004). Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes. FEMS Microbial Ecology, 47(1), 51-64. https://doi.org/10.1016/S0168-6496(03)00234-4

Author

Garbeva, P ; van Veen, JA ; van Elsas, JD. / Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes. In: FEMS Microbial Ecology. 2004 ; Vol. 47, No. 1. pp. 51-64.

Harvard

Garbeva, P, van Veen, JA & van Elsas, JD 2004, 'Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes', FEMS Microbial Ecology, vol. 47, no. 1, pp. 51-64. https://doi.org/10.1016/S0168-6496(03)00234-4

Standard

Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes. / Garbeva, P; van Veen, JA; van Elsas, JD.

In: FEMS Microbial Ecology, Vol. 47, No. 1, 15.01.2004, p. 51-64.

Research output: Contribution to journalArticleAcademicpeer-review

Vancouver

Garbeva P, van Veen JA, van Elsas JD. Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes. FEMS Microbial Ecology. 2004 Jan 15;47(1):51-64. https://doi.org/10.1016/S0168-6496(03)00234-4


BibTeX

@article{4ec7db8049224192827635a0b05a06fe,
title = "Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes",
abstract = "The genus Pseudomonas is one of the best-studied bacterial groups in soil, and includes numerous species of environmental interest. Pseudomonas species play key roles in soil, for instance in biological control of soil-borne plant pathogens and in bioremediation of pollutants. A polymerase chain reaction-denaturing gradient gel electrophoresis system that specifically describes the diversity of Pseudomonas spp. in soil was developed. On the basis of this molecular method as well as cultivation-based approaches, the diversity of Pseudomonas species in soil under different agricultural regimes (permanent grassland, arable land either under rotation or under monoculture of maize) was studied. Both types of approaches revealed differences in the composition of Pseudomonas populations between the treatments. Differences between the treatments were also found based on the frequency of isolation of Pseudomonas strains with antagonistic properties against the soil-borne pathogen Rhizoctonia solani AG3. Higher relative numbers of isolates either with antagonistic activity toward this pathogen or with chitinolytic activity were obtained from permanent grassland or from the short-term arable land than from the arable land. The results obtained in this study strongly indicate that agricultural regimes influence the structure of Pseudomonas populations in soil, with specific antagonistic subpopulations being stimulated in grassland as compared to arable land. (C) 2003 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.",
keywords = "pseudomonas, bacterial diversity, soil, polymerase chain reaction, denaturing gradient gel electrophoresis, antifungal activity, 16S RIBOSOMAL-RNA, GRADIENT GEL-ELECTROPHORESIS, MICROBIAL COMMUNITY STRUCTURE, FLUORESCENT PSEUDOMONADS, BACTERIAL COMMUNITIES, PLANT, RHIZOSPHERE, ROOTS, SPP., 2,4-DIACETYLPHLOROGLUCINOL",
author = "P Garbeva and {van Veen}, JA and {van Elsas}, JD",
year = "2004",
month = "1",
day = "15",
doi = "10.1016/S0168-6496(03)00234-4",
language = "English",
volume = "47",
pages = "51--64",
journal = "FEMS Microbial Ecology",
issn = "0168-6496",
publisher = "Oxford University Press",
number = "1",

}

RIS

TY - JOUR

T1 - Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes

AU - Garbeva, P

AU - van Veen, JA

AU - van Elsas, JD

PY - 2004/1/15

Y1 - 2004/1/15

N2 - The genus Pseudomonas is one of the best-studied bacterial groups in soil, and includes numerous species of environmental interest. Pseudomonas species play key roles in soil, for instance in biological control of soil-borne plant pathogens and in bioremediation of pollutants. A polymerase chain reaction-denaturing gradient gel electrophoresis system that specifically describes the diversity of Pseudomonas spp. in soil was developed. On the basis of this molecular method as well as cultivation-based approaches, the diversity of Pseudomonas species in soil under different agricultural regimes (permanent grassland, arable land either under rotation or under monoculture of maize) was studied. Both types of approaches revealed differences in the composition of Pseudomonas populations between the treatments. Differences between the treatments were also found based on the frequency of isolation of Pseudomonas strains with antagonistic properties against the soil-borne pathogen Rhizoctonia solani AG3. Higher relative numbers of isolates either with antagonistic activity toward this pathogen or with chitinolytic activity were obtained from permanent grassland or from the short-term arable land than from the arable land. The results obtained in this study strongly indicate that agricultural regimes influence the structure of Pseudomonas populations in soil, with specific antagonistic subpopulations being stimulated in grassland as compared to arable land. (C) 2003 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.

AB - The genus Pseudomonas is one of the best-studied bacterial groups in soil, and includes numerous species of environmental interest. Pseudomonas species play key roles in soil, for instance in biological control of soil-borne plant pathogens and in bioremediation of pollutants. A polymerase chain reaction-denaturing gradient gel electrophoresis system that specifically describes the diversity of Pseudomonas spp. in soil was developed. On the basis of this molecular method as well as cultivation-based approaches, the diversity of Pseudomonas species in soil under different agricultural regimes (permanent grassland, arable land either under rotation or under monoculture of maize) was studied. Both types of approaches revealed differences in the composition of Pseudomonas populations between the treatments. Differences between the treatments were also found based on the frequency of isolation of Pseudomonas strains with antagonistic properties against the soil-borne pathogen Rhizoctonia solani AG3. Higher relative numbers of isolates either with antagonistic activity toward this pathogen or with chitinolytic activity were obtained from permanent grassland or from the short-term arable land than from the arable land. The results obtained in this study strongly indicate that agricultural regimes influence the structure of Pseudomonas populations in soil, with specific antagonistic subpopulations being stimulated in grassland as compared to arable land. (C) 2003 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved.

KW - pseudomonas

KW - bacterial diversity

KW - soil

KW - polymerase chain reaction

KW - denaturing gradient gel electrophoresis

KW - antifungal activity

KW - 16S RIBOSOMAL-RNA

KW - GRADIENT GEL-ELECTROPHORESIS

KW - MICROBIAL COMMUNITY STRUCTURE

KW - FLUORESCENT PSEUDOMONADS

KW - BACTERIAL COMMUNITIES

KW - PLANT

KW - RHIZOSPHERE

KW - ROOTS

KW - SPP.

KW - 2,4-DIACETYLPHLOROGLUCINOL

U2 - 10.1016/S0168-6496(03)00234-4

DO - 10.1016/S0168-6496(03)00234-4

M3 - Article

VL - 47

SP - 51

EP - 64

JO - FEMS Microbial Ecology

JF - FEMS Microbial Ecology

SN - 0168-6496

IS - 1

ER -

ID: 4167790