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Stratingh Institute for Chemistry

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  1. 2021
  2. Yakovlieva, L., Ramírez-Palacios, C., Marrink, S. J., & Walvoort, M. T. C. (2021). Semiprocessive Hyperglycosylation of Adhesin by Bacterial Protein N-Glycosyltransferases. ACS chemical biology, 16(1), 165-175. https://doi.org/10.1021/acschembio.0c00848
  3. Arkhipova, V., Fu, H., Hoorens, M., Trinco, G., Lameijer, L., Marin, E., Feringa, B. L., Poelarends, G., Szymanski, W., Slotboom, D., & Guskov, A. (2021). Structural Aspects of Photopharmacology: Insight into the Binding of Photoswitchable and Photocaged Inhibitors to the Glutamate Transporter Homologue. Journal of the American Chemical Society, [jacs.0c11336]. https://doi.org/10.1021/jacs.0c11336, https://doi.org/https://pubs.acs.org/doi/pdf/10.1021/jacs.0c11336
  4. Chordia, S., Narasimhan, S., Lucini Paioni, A., Baldus, M., & Roelfes, G. (2021). In vivo Assembly of Artificial Metalloenzymes and Application in Whole-Cell Biocatalysis. Angewandte Chemie (International ed. in English). https://doi.org/10.1002/anie.202014771
  5. Hartman, A. M., Jumde, V. R., Elgaher, W. A. M., Te Poele, E. M., Dijkhuizen, L., & Hirsch, A. K. H. (2021). Potential Dental Biofilm Inhibitors: Dynamic Combinatorial Chemistry Affords Sugar-Based Molecules that Target Bacterial Glucosyltransferase. ChemMedChem, 16(1), 113-123. [cmdc.202000222]. https://doi.org/10.1002/cmdc.202000222
  6. Helbert, H., Antunes, I. F., Luurtsema, G., Szymanski, W., Feringa, B. L., & Elsinga, P. H. (2021). Cross-coupling of [11C]methyllithium for 11C-labelled PET tracer synthesis. Chemical communications (Cambridge, England), 57(2), 203-206. https://doi.org/10.1039/d0cc05392a
  7. Tosi, F., Berrocal, J. A., Stuart, M. C. A., Wezenberg, S. J., & Feringa, B. L. (2021). Tuning of Morphology by Chirality in Self-Assembled Structures of Bis(Urea) Amphiphiles in Water. Chemistry, 27(1), 326-330. https://doi.org/10.1002/chem.202003403
  8. 2020
  9. Koopmans, M., Leiviskä, M. A. T., Liu, J., Dong, J., Qiu, L., Hummelen, J. C., Portale, G., Heiber, M. C., & Koster, L. J. A. (2020). Electrical Conductivity of Doped Organic Semiconductors Limited by Carrier-Carrier Interactions. ACS Applied Materials & Interfaces, 12(50), 56222-56230. https://doi.org/10.1021/acsami.0c15490
  10. Liu, J., Ye, G., Potgieser, H. G. O., Koopmans, M., Sami, S., Nugraha, M. I., Villalva, D. R., Sun, H., Dong, J., Yang, X., Qiu, X., Yao, C., Portale, G., Fabiano, S., Anthopoulos, T. D., Baran, D., Havenith, R. W. A., Chiechi, R. C., & Koster, L. J. A. (2020). Amphipathic Side Chain of a Conjugated Polymer Optimizes Dopant Location toward Efficient N-Type Organic Thermoelectrics. Advanced materials, [2006694]. https://doi.org/10.1002/adma.202006694
  11. Speelman, T., Cunha, A., Kathir, R. K., & Havenith, R. W. A. (2020). Electronic couplings for singlet fission: Orbital choice and extrapolation to the complete basis set limit. Journal of Computational Chemistry. https://doi.org/10.1002/jcc.26458
  12. Markovitch, O., Ottele, J., Veldman, O., & Otto, S. (2020). Automated device for continuous stirring while sampling in liquid chromatography systems. Communications chemistry, 3(1), [180]. https://doi.org/10.1038/s42004-020-00427-5
  13. van der Zouwen, A. J. N., Jeucken, A., Steneker, R., Hohmann, K. F., Lohse, J., Slotboom, D. J., & Witte, M. (2020). Iminoboronates as dual purpose linkers in chemical probe development. Chemistry. https://doi.org/10.1002/chem.202005115
  14. Hu, S., Kuwabara, R., Beukema, M., Ferrari, M., de Haan, B. J., Walvoort, M. T. C., de Vos, P., & Smink, A. M. (2020). Low methyl-esterified pectin protects pancreatic beta-cells against diabetes-induced oxidative and inflammatory stress via galectin-3. Carbohydrate Polymers, 249, [116863]. https://doi.org/10.1016/j.carbpol.2020.116863
  15. Ye, G., Liu, Y., Liu, J., Qiu, X., Koster, L. J. A., & Chiechi, R. C. (2020). Protonic acid doping of low band-gap conjugated polyions. Materials chemistry frontiers, 4(12), 3585-3593. https://doi.org/10.1039/d0qm00278j
  16. Tao, Y., De Luca, O., Singh, B., Kamphuis, A. J., Chen, J., Rudolf, P., & Pescarmona, P. P. (2020). WO3–SiO2 nanomaterials synthesized using a novel template-free method in supercritical CO2 as heterogeneous catalysts for epoxidation with H2O2. Materials Today Chemistry, 18, [100373]. https://doi.org/10.1016/j.mtchem.2020.100373
  17. Li, Z., Chakraborty, P., de Vries, R. H., Song, C., Zhao, X., Roelfes, G., Scheffers, D-J., & Kuipers, O. P. (2020). Characterization of two relacidines belonging to a novel class of circular lipopeptides that act against Gram-negative bacterial pathogens. Environmental Microbiology, 22(12), 5125-5136. https://doi.org/10.1111/1462-2920.15145
  18. Li, Z., de Vries, R. H., Chakraborty, P., Song, C., Zhao, X., Scheffers, D-J., Roelfes, G., & Kuipers, O. P. (2020). Novel modifications of nonribosomal peptides from Brevibacillus laterosporus MG64 and investigation of their mode of action. Applied and environmental microbiology, 86(24), 1-14. [e01981-20]. https://doi.org/10.1128/AEM.1981-20
  19. Lameijer, L. N., Budzak, S., Simeth, N. A., Hansen, M. J., Feringa, B. L., Jacquemin, D., & Szymanski, W. (2020). General Principles for the Design of Visible-Light-Responsive Photoswitches: Tetra-ortho-Chloro-Azobenzenes. Angewandte Chemie-International Edition, 59(48), 21663-21670. https://doi.org/10.1002/anie.202008700
  20. Welleman, I. M., Hoorens, M. W. H., Feringa, B. L., Boersma, H. H., & Szymanski, W. (2020). Photoresponsive molecular tools for emerging applications of light in medicine. Chemical Science, 11(43), 11672-11691. https://doi.org/10.1039/d0sc04187d
  21. Alves Fernandes Bispo, M., Anaya Sánchez, A., Suhani, S., Raineri, E., Lopez Alvarez, M., Heuker, M., Szymanski, W., Romero Pastrana, F., Buist, G., Horswill, A. R., Francis, K. P., Dam, van, G., Oosten, van, M., & Dijl, van, J. M. (2020). Fighting Staphylococcus aureus infections with light and photoimmunoconjugates. JCI Insight, (22), 1-16. https://doi.org/10.1172/jci. insight.139512.
  22. de Vries, R. H., Viel, J. H., Kuipers, O. P., & Roelfes, G. (2020). Rapid and selective chemical editing of Ribosomally synthesized and Post-translationally modified Peptides (RiPPs) via Cu(II)-catalyzed β-borylation of dehydroamino acids. Angewandte Chemie (International ed. in English). https://doi.org/10.1002/anie.202011460
  23. Liu, J., van der Zee, B., Alessandri, R., Sami, S., Dong, J., Nugraha, M. I., Barker, A. J., Rousseva, S., Qiu, L., Qiu, X., Klasen, N., Chiechi, R. C., Baran, D., Caironi, M., Anthopoulos, T. D., Portale, G., Havenith, R. W. A., Marrink, S. J., Hummelen, J. C., & Koster, L. J. A. (2020). N-type organic thermoelectrics: demonstration of ZT > 0.3. Nature Communications, 11(1), [5694]. https://doi.org/10.1038/s41467-020-19537-8
  24. Yan, X., Ge, L., Castiñeira Reis, M., & Harutyunyan, S. (2020). Nucleophilic Dearomatization of N-Heteroaromatics Enabled by Lewis Acids and Copper Catalysis. Journal of the American Chemical Society, 142(47), 20247–20256. https://doi.org/10.1021/jacs.0c09974
  25. Cissé, N., & Kudernac, T. (2020). Light-Fuelled Self-Assembly of Cyclic Peptides into Supramolecular Tubules. ChemSystemsChem, [e2000012]. https://doi.org/10.1002/syst.202000012
  26. Cheng, L., Kiewiet, M. B. G., Logtenberg, M. J., Groeneveld, A., Nauta, A., Schols, H. A., Walvoort, M. T. C., Harmsen, H. J. M., & de Vos, P. (2020). Effects of Different Human Milk Oligosaccharides on Growth of Bifidobacteria in Monoculture and Co-culture With Faecalibacterium prausnitzii. Frontiers in Microbiology, 11, [569700]. https://doi.org/10.3389/fmicb.2020.569700
  27. Ghanem, M., Dubé, J-Y., Wang, J., McIntosh, F., Houle, D., Domenech, P., Reed, M. B., Raman, S., Buter, J., Minnaard, A. J., Moody, D. B., & Behr, M. A. (2020). Heterologous Production of 1-Tuberculosinyladenosine in Mycobacterium kansasii Models Pathoevolution towards the Transcellular Lifestyle of Mycobacterium tuberculosis. Mbio, 11(5), 1-15. [e02645-20]. https://doi.org/10.1128/mBio.02645-20
  28. Castiñeira Reis, M., Marín-Luna, M., Marín-Luna, M., Janković, N., Nieto Faza, O., & López, S. (2020). Au(III) Catalyzes the Cross-Coupling Between Activated Methylenes and Alkene Derivatives. Journal of Catalysis, 159-164. https://doi.org/10.1016/j.jcat.2020.09.030
  29. Abu-Omar, M. M., Barta, K., Beckham, G. T., Luterbacher, J., Ralph, J., Rinaldi, R., Roman-Leshkov, Y., Samec, J., Sels, B., & Wang, F. (2020). Guidelines for performing lignin-first biorefining. Energy & Environmental Science. https://doi.org/10.1039/d0ee02870c
  30. Reessing, F., Huijsse, S. E. M., Dierckx, R. A. J. O., Feringa, B. L., Borra, R. J. H., & Szymanski, W. (2020). A Photocleavable Contrast Agent for Light-Responsive MRI. Pharmaceuticals, 13(10), 1-14. [296]. https://doi.org/10.3390/ph13100296
  31. Pfeifer, L., Hoang, N., Scherubl, M., Pshenichnikov, M. S., & Feringa, B. L. (2020). Powering rotary molecular motors with low-intensity near-infrared light. Science Advances, 6(44), [ eabb6165]. https://doi.org/10.1126/sciadv.abb6165
  32. Harutyunyan, S. R., Kulish, K., Boldrini, C., Castiñeira Reis, M., & Pérez, J. (2020). Lewis acid promoted dearomatization of naphthols. Chemistry, (68), 15843-15846. https://doi.org/10.1002/chem.202003392
  33. Villarino, L., Chordia, S., Alonso-Cotchico, L., Reddem, E., Zhou, Z., Thunnissen, A. M. W. H., Maréchal, J-D., & Roelfes, G. (2020). Cofactor Binding Dynamics Influence the Catalytic Activity and Selectivity of an Artificial Metalloenzyme. ACS Catalysis, 10(20), 11783-11790. https://doi.org/10.1021/acscatal.0c01619
  34. Xiao, Z., Chen, D., Song, S., van der Vlag, R., van der Wouden, P. E., van Merkerk, R., Cool, R., Hirsch, A. K. H., Melgert, B., Quax, W. J., Poelarends, G. J., & Dekker, F. J. (2020). 7-Hydroxycoumarins are Affinity-based Fluorescent Probes for Competitive Binding Studies of Macrophage Migration Inhibitory Factor. Journal of Medicinal Chemistry, (20), 11920-11933. https://doi.org/10.1021/acs.jmedchem.0c01160
  35. Liu, Y., Ornago, L., Carlotti, M., AI, Y., abbasi, M. E., Soni, S., Asyuda, A., Zharnikov, M., Zant, H. S. J. V. D., & Chiechi, R. (2020). Intermolecular Effects on Tunneling through Acenes in Large-Area and Single-Molecule Junctions. The Journal of Physical Chemistry. C: Nanomaterials and Interfaces, 124(41), 22776–22783. https://doi.org/10.1021/acs.jpcc.0c05781
  36. van Lier, R. C. W., de Bruijn, A. D., & Roelfes, G. (2020). A Water-Soluble Iridium Photocatalyst for Chemical Modification of Dehydroalanines in Peptides and Proteins. Chemistry. https://doi.org/10.1002/chem.202002599
  37. De Santi, A., Galkin, M. V., Lahive, C. W., Deuss, P. J., & Barta, K. (2020). Lignin-First Fractionation of Softwood Lignocellulose Using a Mild Dimethyl Carbonate and Ethylene Glycol Organosolv Process. Chemsuschem, 13(17), 4468-4477. https://doi.org/10.1002/cssc.201903526
  38. Kumar, S., Soni, S., Danowski, W., van Beek, C. L. F., Feringa, B. L., Rudolf, P., & Chiechi, R. C. (2020). Correlating the Influence of Disulfides in Monolayers across Photoelectron Spectroscopy Wettability and Tunneling Charge- Transport. Journal of the American Chemical Society, 142(35), 15075-15083. https://doi.org/10.1021/jacs.0c06508
  39. Xi, X-Y., Sun, Z-H., Cao, H-T., Pei, Y-T., ten Brink, G. H., Deuss, P. J., Barta, K., & Heeres, H. J. (2020). Catalyst Performance Studies on the Guerbet Reaction in a Continuous Flow Reactor Using Mono- and Bi-Metallic Cu-Ni Porous Metal Oxides. Catalysts, 10(9), 996. [996]. https://doi.org/10.3390/catal10090996
  40. Krause, S., Hosono, N., & Kitagawa, S. (2020). Chemistry of Soft Porous Crystals: Structural Dynamics and Gas Adsorption Properties. Angewandte Chemie-International Edition, 59(36), 15325-15341. https://doi.org/10.1002/anie.202004535
  41. Pappas, C. G. (2020). A sound approach to self-assembly. Nature Chemistry, 12(9), 784-785. https://doi.org/10.1038/s41557-020-0526-0
  42. Massetti, M., Bonfadini, S., Nava, D., Butti, M., Criante, L., Lanzani, G., Qiu, L., Hummelen, J. C., Liu, J., Koster, L. J. A., & Caironi, M. (2020). Fully direct written organic micro-thermoelectric generators embedded in a plastic foil. Nano energy, 75, [104983]. https://doi.org/10.1016/j.nanoen.2020.104983
  43. Uiterweerd, M. T., Santiago, I. N., van der Heul, H., van Wezel, G. P., & Minnaard, A. J. (2020). Iso-maleimycin, a Constitutional Isomer of Maleimycin, fromStreptomycessp. QL37. European Journal of Organic Chemistry, 2020(32), 5145-5152. https://doi.org/10.1002/ejoc.202000767
  44. Lončar, N., Rozeboom, H. J., Franken, L. E., Stuart, M. C. A., & Fraaije, M. W. (2020). Structure of a robust bacterial protein cage and its application as a versatile biocatalytic platform through enzyme encapsulation. Biochemical and Biophysical Research Communications, 529(3), 548-553. [j.bbrc.2020.06.059]. https://doi.org/10.1016/j.bbrc.2020.06.059
  45. Szymanski, W., Reessing, F., Alves Fernandes Bispo, M., Lopez Alvarez, M., Oosten, van, M., Feringa, B. L., & Dijl, van, J. M. (2020). A Facile and Reproducible Synthesis of Near-Infrared Fluorescent Conjugates with Small Targeting Molecules for Microbial Infection Imaging. ACS Omega, (35), 22071-22080. https://doi.org/10.2021/acsomega.0c02094
  46. Berrocal, J. A., Pfeifer, L., Heijnen, D., & Feringa, B. L. (2020). Synthesis of Core-Modified Third-Generation Light-Driven Molecular Motors. Journal of Organic Chemistry, 85(16), 10670-10680. https://doi.org/10.1021/acs.joc.0c01235
  47. de Vries, R. H., & Roelfes, G. (2020). Cu(ii)-Catalysed β-silylation of dehydroalanine residues in peptides and proteins. Chemical communications (Cambridge, England), 56(75), 11058-11061. https://doi.org/10.1039/d0cc05026a
  48. Kortekaas, L., Steen, J. D., Duijnstee, D. R., Jacquemin, D., & Browne, W. R. (2020). Noncommutative Switching of Double Spiropyrans. Journal of Physical Chemistry A, 124(32), 6458-6467. https://doi.org/10.1021/acs.jpca.0c02286
  49. Maity, S., Ottelé, J., Santiago, G. M., Frederix, P. W. J. M., Kroon, P., Markovitch, O., Stuart, M. C. A., Marrink, S. J., Otto, S., & Roos, W. H. (2020). Caught in the Act: Mechanistic Insight into Supramolecular Polymerization-Driven Self-Replication from Real-Time Visualization. Journal of the American Chemical Society, 142(32), 13709-13717. https://doi.org/10.1021/jacs.0c02635
  50. Ribovski, L., Zhou, Q., Chen, J., Feringa, B. L., van Rijn, P., & Zuhorn, I. S. (2020). Light-induced molecular rotation triggers on-demand release from liposomes. Chemical communications (Cambridge, England), 56(62), 8774-8777. https://doi.org/10.1039/d0cc02499f
  51. Zhang, Q., Qu, D-H., Tian, H., & Feringa, B. L. (2020). Bottom-Up: Can Supramolecular Tools Deliver Responsiveness from Molecular Motors to Macroscopic Materials? Matter, 3(2), 355-370. https://doi.org/10.1016/j.matt.2020.05.014
  52. Pereira, S. G. T., Hudoklin, S., Kreft, M. E., Kostevsek, N., Stuart, M. C. A., & Al-Jamal, W. T. (2020). Erratum: Intracellular activation of a prostate specific antigen-cleavable doxorubicin prodrug: A key feature toward prodrug-nanomedicine design (Molecular Pharmaceutics (2019) 16:4 (1573-1585) DOI:10.1021/acs.molpharmaceut.8b01257). Molecular pharmaceutics, 17(8), 3149-3149. https://doi.org/10.1021/acs.molpharmaceut.0c00676
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