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Chemical Biology 1

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  1. 2021
  2. Galenkamp, N. S., Van Meervelt, V., Mutter, N. L., van der Heide, N. J., Wloka, C., & Maglia, G. (2021). Preparation of Cytolysin A (ClyA) Nanopores. In M. A. Fahie (Ed.), Nanopore Technology: Methods in Molecular Biology (pp. 11-18). (Methods in Molecular Biology; Vol. 2186). Humana Press. https://doi.org/10.1007/978-1-0716-0806-7_2
  3. Mutter, N. L., Huang, G., van der Heide, N. J., Lucas, F. L. R., Galenkamp, N. S., Maglia, G., & Wloka, C. (2021). Preparation of Fragaceatoxin C (FraC) Nanopores. In M. A. Fahie (Ed.), Nanopore Technology: Methods in Molecular Biology (pp. 3-10). (Methods in Molecular Biology; Vol. 2186). Humana Press. https://doi.org/10.1007/978-1-0716-0806-7_1
  4. 2020
  5. Bayoumi, M., Nomidis, S. K., Willems, K., Carlon, E., & Maglia, G. (2020). Autonomous and Active Transport Operated by an Entropic DNA Piston. Nano Letters. https://doi.org/10.1021/acs.nanolett.0c04464
  6. Ciudad, S., Puig, E., Botzanowski, T., Meigooni, M., Arango, A. S., Do, J., Mayzel, M., Bayoumi, M., Chaignepain, S., Maglia, G., Cianferani, S., Orekhov, V., Tajkhorshid, E., Bardiaux, B., & Carulla, N. (2020). Aβ(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage. Nature Communications, 11(1), [3014]. https://doi.org/10.1038/s41467-020-16566-1
  7. van der Zouwen, A. J. N., Jeucken, A., Steneker, R., Hohmann, K. F., Lohse, J., Slotboom, D. J., & Witte, M. (2020). Iminoboronates as dual purpose linkers in chemical probe development. Chemistry. https://doi.org/10.1002/chem.202005115
  8. Willems, K., Ruić, D., L R Lucas, F., Barman, U., Verellen, N., Hofkens, J., Maglia, G., & Van Dorpe, P. (2020). Accurate modeling of a biological nanopore with an extended continuum framework. Nanoscale, 12(32), 16775-16795. https://doi.org/10.1039/d0nr03114c
  9. Huang, G., Willems, K., Bartelds, M., van Dorpe, P., Soskine, M., & Maglia, G. (2020). Electro-Osmotic Vortices Promote the Capture of Folded Proteins by PlyAB Nanopores. Nano Letters, 20(5), 3819-3827. https://doi.org/10.1021/acs.nanolett.0c00877
  10. Galenkamp, N. S., Biesemans, A., & Maglia, G. (2020). Directional conformer exchange in dihydrofolate reductase revealed by single-molecule nanopore recordings. Nature Chemistry, 12(5), 481-488. https://doi.org/10.1038/s41557-020-0437-0
  11. Restrepo-Pérez, L., Huang, G., Bohländer, P. R., Worp, N., Eelkema, R., Maglia, G., Joo, C., & Dekker, C. (2020). Erratum. Acs Nano, 14(4), 5148. [acsnano.0c01699]. https://doi.org/10.1021/acsnano.0c01699
  12. Huang, G., & Maglia, G. (2020). Biological nanopores having tunable pore diameters and uses thereof as analytical tools. (Patent No. WO2020055246).
  13. Zernia, S., van der Heide, N. J., Galenkamp, N. S., Gouridis, G., & Maglia, G. (2020). Current Blockades of Proteins Inside Nanopores for Real-Time Metabolome Analysis. Acs Nano, 14(2), 2296-2307. [acsnano.9b09434]. https://doi.org/10.1021/acsnano.9b09434
  14. Willems, K., Ruic, D., Biesemans, A., Galenkamp, N., Van Dorpe, P., & Maglia, G. (2020). Electrophoretic Trapping of a Single Protein Inside a Nanopore. Biophysical Journal, 118(3), 305A-305A.
  15. Mutter, N. (2020). Control of nanopore formation using external triggers. University of Groningen. https://doi.org/10.33612/diss.131163011
  16. Galenkamp, N. (2020). Single-molecule enzymology with a ClyA nanopore. University of Groningen. https://doi.org/10.33612/diss.130258760
  17. 2019
  18. Restrepo-Pérez, L., Huang, G., Bohländer, P. R., Worp, N., Eelkema, R., Maglia, G., Joo, C., & Dekker, C. (2019). Resolving Chemical Modifications to a Single Amino Acid within a Peptide Using a Biological Nanopore. Acs Nano, 13(12), 13668-13676. https://doi.org/10.1021/acsnano.9b05156
  19. Restrepo-Pérez, L., Wong, C. H., Maglia, G., Dekker, C., & Joo, C. (2019). Label-Free Detection of Post-translational Modifications with a Nanopore. Nano Letters, 19(11), 7957-7964. https://doi.org/10.1021/acs.nanolett.9b03134
  20. Mutter, N. L., Volarić, J., Szymanski, W., Feringa, B. L., & Maglia, G. (2019). Reversible Photocontrolled Nanopore Assembly. Journal of the American Chemical Society, 141(36), 14356-14363. https://doi.org/10.1021/jacs.9b06998
  21. Willems, K., Ruić, D., Biesemans, A., Galenkamp, N. S., Van Dorpe, P., & Maglia, G. (2019). Engineering and Modeling the Electrophoretic Trapping of a Single Protein Inside a Nanopore. Acs Nano, 13(9), 9980-9992. https://doi.org/10.1021/acsnano.8b09137
  22. Maglia, G., & Browne, W. (2019). Editorial overview: Reprogramming biology: from biopolymers to complex systems. Current Opinion in Biotechnology, 58, v-vi. https://doi.org/10.1016/j.copbio.2019.08.002
  23. Okada, H., Wloka, C., Wu, J-Q., & Bi, E. (2019). Distinct Roles of Myosin-II Isoforms in Cytokinesis under Normal and Stressed Conditions. iScience , 14, 69-87. https://doi.org/10.1016/j.isci.2019.03.014
  24. Zhao, S., Restrepo-Pérez, L., Soskine, M., Maglia, G., Joo, C., Dekker, C., & Aksimentiev, A. (2019). Electro-Mechanical Conductance Modulation of a Nanopore Using a Removable Gate. Acs Nano, 13(2), 2398-2409. https://doi.org/10.1021/acsnano.8b09266
  25. Huang, G., Voet, A., & Maglia, G. (2019). FraC nanopores with adjustable diameter identify the mass of opposite-charge peptides with 44 dalton resolution. Nature Communications, 10, [835]. https://doi.org/10.1038/s41467-019-08761-6
  26. Huang, K. (2019). Engineering biological nanopores for proteomics study. University of Groningen. https://doi.org/10.33612/diss.102598418
  27. 2018
  28. Mutter, N. L., Soskine, M., Huang, G., Albuquerque, I. S., Bernardes, G. J. L., & Maglia, G. (2018). Modular pore-forming immunotoxins with caged cytotoxicity tailored by directed evolution. ACS chemical biology, 13(11), 3153–3160. [8b00720]. https://doi.org/10.1021/acschembio.8b00720
  29. Galenkamp, N. S., Soskine, M., Hermans, J., Wloka, C., & Maglia, G. (2018). Direct electrical quantification of glucose and asparagine from bodily fluids using nanopores. Nature Communications, 9(1), [4085]. https://doi.org/10.1038/s41467-018-06534-1
  30. Nomidis, S. K., Hooyberghs, J., Maglia, G., & Carlon, E. (2018). DNA capture into the ClyA nanopore: Diffusion-limited versus reaction-limited processes. Journal of Physics-Condensed Matter, 30(30), [304001]. https://doi.org/10.1088/1361-648X/aacc01
  31. Maglia, G., Wloka, C., Mutter, N. L., Soskine, M., & Huang, G. (2018). Biological nanopores for biopolymer sensing and sequencing based on frac actinoporin. (Patent No. WO2018012963). https://worldwide.espacenet.com/publicationDetails/originalDocument?CC=WO&NR=2018012963A1&KC=A1&FT=D&ND=3&date=20180118&DB=&locale=en_EP
  32. Wilmaerts, D., Bayoumi, M., Dewachter, L., Knapen, W., Mika, J. T., Hofkens, J., Dedecker, P., Maglia, G., Verstraeten, N., & Michiels, J. (2018). The Persistence-Inducing Toxin HokB Forms Dynamic Pores That Cause ATP Leakage. Mbio, 9(4), [ARTN e00744-18]. https://doi.org/10.1128/mBio.00744-18
  33. 2017
  34. Van Meervelt, V., Soskine, M., Singh, S., Schuurman-Wolters, G., Wijma, H. J., Poolman, B., & Maglia, G. (2017). Real-time conformational changes and controlled orientation of native proteins inside a protein nanoreactor. Journal of the American Chemical Society, 139(51), 18640-18646. [jacs.7b10106]. https://doi.org/10.1021/jacs.7b10106
  35. Huang, G., Willems, K., Soskine, M., Wloka, C., & Maglia, G. (2017). Electro-osmotic capture and ionic discrimination of peptide and protein biomarkers with FraC nanopores. Nature Communications, 8, 1-11. [935]. https://doi.org/10.1038/s41467-017-01006-4
  36. Oh, Y., Schreiter, J. H., Okada, H., Wloka, C., Okada, S., Yan, D., Duan, X., & Bi, E. (2017). Hof1 and Chs4 Interact via F-BAR Domain and Sel1-like Repeats to Control Extracellular Matrix Deposition during Cytokinesis. Current Biology, 27(18), 2878-+. https://doi.org/10.1016/j.cub.2017.08.032
  37. Aminipour, Z., Khorshid, M., Bayoumi, M., Losada-Perez, P., Thoelen, R., Bonakdar, S., Keshvari, H., Maglia, G., Wagner, P., & Van der Bruggen, B. (2017). Formation and electrical characterization of black lipid membranes in porous filter materials. Physica Status Solidi A-Applications and materials science, 214(9), [1700104]. https://doi.org/10.1002/pssa.201700104
  38. Willems, K., Van Meervelt, V., Wloka, C., & Maglia, G. (2017). Single-molecule nanopore enzymology. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 372(1726), [20160230]. https://doi.org/10.1098/rstb.2016.0230
  39. Bayoumi, M., Bayley, H., Maglia, G., & Sapra, K. T. (2017). Multi-compartment encapsulation of communicating droplets and droplet networks in hydrogel as a model for artificial cells. Scientific Reports, 7, 1-11. [45167]. https://doi.org/10.1038/srep45167
  40. Wloka, C., Van Meervelt, V., van Gelder, D., Danda, N., Jager, N., Williams, C. P., & Maglia, G. (2017). Label-Free and Real-Time Detection of Protein Ubiquitination with a Biological Nanopore. Acs Nano, 11(5), 4387-4394. [acsnano.6b07760]. https://doi.org/10.1021/acsnano.6b07760
  41. Loveridge, E. J., Hroch, L., Hughes, R. L., Williams, T., Davies, R. L., Angelastro, A., Luk, L. Y. P., Maglia, G., & Allemann, R. K. (2017). Reduction of Folate by Dihydrofolate Reductase from Thermotoga maritima. Biochemistry, 56(13), 1879-1886. [acs.biochem.6b01268]. https://doi.org/10.1021/acs.biochem.6b01268
  42. Okada, S., Wloka, C., & Bi, E. (2017). Analysis of protein dynamics during cytokinesis in budding yeast. In A. Echard (Ed.), Cytokinesis (1 ed., pp. 25-45). (Methods in Cell Biology; Vol. 137). Elsevier. https://doi.org/10.1016/bs.mcb.2016.04.002
  43. 2016
  44. Maglia, G., Soskine, M., Biesemans, A., Meervelt, V., & Poolman, B. (2016). Nanopores with internal protein adaptors. (Patent No. WO2016166232). https://worldwide.espacenet.com/publicationDetails/originalDocument?CC=WO&NR=2016166232A1&KC=A1&FT=D&ND=3&date=20161020&DB=&locale=en_EP
  45. Wloka, C., Mutter, N. L., Soskine, M., & Maglia, G. (2016). Alpha-Helical Fragaceatoxin C Nanopore Engineered for Double-Stranded and Single-Stranded Nucleic Acid Analysis. Angewandte Chemie - International Edition, 55(40), 12494-12498. https://doi.org/10.1002/anie.201606742
  46. Serra-Batiste, M., Ninot-Pedrosa, M., Bayoumi, M., Gairí, M., Maglia, G., & Carulla, N. (2016). Aβ42 assembles into specific β-barrel pore-forming oligomers in membrane-mimicking environments. Proceedings of the National Academy of Sciences of the United States of America, 113(39), 10866-10871. https://doi.org/10.1073/pnas.1605104113
  47. Franceschini, L., Brouns, T., Willems, K., Carlon, E., & Maglia, G. (2016). DNA Translocation through Nanopores at Physiological Ionic Strengths Requires Precise Nanoscale Engineering. Acs Nano, 10(9), 8394-8402. https://doi.org/10.1021/acsnano.6b03159
  48. McGinn, S., Bauer, D., Brefort, T., Dong, L., El-Sagheer, A., Elsharawy, A., Evans, G., Falk-Sörqvist, E., Forster, M., Fredriksson, S., Freeman, P., Freitag, C., Fritzsche, J., Gibson, S., Gullberg, M., Gut, M., Heath, S., Heath-Brun, I., Heron, A. J., ... Gut, I. G. (2016). New Technologies for DNA analysis-A review of the READNA Project. New Biotechnology, 33(3), 311-330. https://doi.org/10.1016/j.nbt.2015.10.003
  49. Biesemans, A., Soskine, M., & Maglia, G. (2016). Controlling the Nanoscopic Confinement of Enzymes Inside ClyA Nanopores for Single-Protein Studies. Biophysical Journal, 110(3, Supplement 1), 518A-518A. https://doi.org/10.1016/j.bpj.2015.11.2769
  50. Maglia, G. (2016). Design and Engineering of Nanopores with Emergent Functions. Biophysical Journal, 110(3), 536A-536A. https://doi.org/10.1016/j.bpj.2015.11.2871
  51. Vega, M., Perez, M. S., Granell, P., Golmar, F., Wloka, C., Maglia, G., Dieguez, M. J., Del Valle, E. M., Lasorsa, C., & Lerner, B. (2016). Effect of butanol and salt concentration on solid-state nanopores resistance. Cogent chemistry, 2, [1225345]. https://doi.org/10.1080/23312009.2016.1225345
  52. 2015
  53. Ho, C-W., Meervelt, V., Tsai, K-C., De Temmerman, P-J., Mast, J., & Maglia, G. (2015). Engineering a nanopore with co-chaperonin function. Science Advances, 1(11), [e1500905]. https://doi.org/10.1126/sciadv.1500905
  54. Biesemans, A., Soskine, M., & Maglia, G. (2015). A Protein Rotaxane Controls the Translocation of Proteins Across a ClyA Nanopore. Nano Letters. https://doi.org/10.1021/acs.nanolett.5b02309
  55. Soskine, M., Biesemans, A., & Maglia, G. (2015). Single-Molecule Analyte Recognition with ClyA Nanopores Equipped with Internal Protein Adaptors. Journal of the American Chemical Society, 137(17), 5793-7. https://doi.org/10.1021/jacs.5b01520
  56. Stoddart, D., Franceschini, L., Heron, A., Bayley, H., & Maglia, G. (2015). DNA stretching and optimization of nucleobase recognition in enzymatic nanopore sequencing. Nanotechnology, 26(8), [084002]. https://doi.org/10.1088/0957-4484/26/8/084002
  57. 2014
  58. Van Meervelt, V., Soskine, M., & Maglia, G. (2014). Detection of Two Isomeric Binding Configurations in a Protein-Aptamer Complex with a Biological Nanopore. Acs Nano, 8(12), 12826-12835. https://doi.org/10.1021/nn506077e
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