Ozoemelam, I. S., van der Graaf, E. R., van Goethem, M-J., Kapusta, M., Zhang, N., Brandenburg, S., & Dendooven, P. (2020). Feasibility of quasi-prompt PET-based range verification in proton therapy. Physics in Medicine and Biology, 65(24), [245013]. https://doi.org/10.1088/1361-6560/aba504

Thummerer, A., de Jong, B. A., Zaffino, P., Meijers, A., Marmitt, G. G., Seco, J., Steenbakkers, R. J. H. M., Langendijk, J. A., Both, S., Spadea, M. F., & Knopf, A. C. (2020). Comparison of the suitability of CBCT- and MR-based synthetic CTs for daily adaptive proton therapy in head and neck patients. Physics in Medicine and Biology, 65(23), 1-16. [235036]. https://doi.org/10.1088/1361-6560/abb1d6

Ribeiro, C. O., Terpstra, J., Janssens, G., Langendijk, J. A., Both, S., Muijs, C. T., Wijsman, R., Knopf, A-C., & Meijers, A. (2020). Evaluation of continuous beam rescanning versus pulsed beam in pencil beam scanned proton therapy for lung tumours. Physics in Medicine and Biology, 65(23), [ARTN 23NT01]. https://doi.org/10.1088/1361-6560/abc5c8

Paganetti, H., Beltran, C. J., Both, S., Dong, L., Flanz, J. B., Furutani, K. M., Grassberger, C., Grosshans, D. R., Knopf, A-C., Langendijk, J. A., Nyström, H., Parodi, K., Raaymakers, B. W., Richter, C., Sawakuchi, G. O., Schippers, J. M., Shaitelman, S. F., Teo, K., Unkelbach, J., ... Lomax, A. J. (2020). Roadmap: proton therapy physics and biology. Physics in Medicine and Biology. https://doi.org/10.1088/1361-6560/abcd16

Kartini, D. A., Sokol, O., Wiedemann, J., Tinganelli, W., Witt, M., Camazzola, G., Kraemer, M., Talabnin, C., Kobdaj, C., & Fuss, M. C. (2020). Validation of a pseudo-3D phantom for radiobiological treatment plan verifications. Physics in Medicine and Biology, (22). https://doi.org/10.1088/1361-6560/abb92d

Meijers, A., Seller Oria, C., Free, J., Bondesson, D., Rabe, M., Parodi, K., Landry, G., Langendijk, J. A., Both, S., Kurz, C., & Knopf, A-C. (2020). Assessment of range uncertainty in lung-like tissue using a porcine lung phantom and proton radiography. Physics in Medicine and Biology, 65(15), [155014]. https://doi.org/10.1088/1361-6560/ab91db

Kostiukhina, N., Palmans, H., Stock, M., Knopf, A-C., Georg, D., & Knaeusl, B. (2020). Time-resolved dosimetry for validation of 4D dose calculation in PBS proton therapy. Physics in Medicine and Biology, 65(12), [125015]. https://doi.org/10.1088/1361-6560/ab8d79

Thummerer, A., Zaffino, P., Meijers, A., Marmitt, G. G., Seco, J., Steenbakkers, R. J. H. M., Langendijk, J. A., Both, S., Spadea, M. F., & Knopf, A-C. (2020). Comparison of CBCT based synthetic CT methods suitable for proton dose calculations in adaptive proton therapy. Physics in Medicine and Biology, 65(9), [095002]. https://doi.org/10.1088/1361-6560/ab7d54

Meijers, A., Free, J., Wagenaar, D., Deffet, S., Knopf, A-C., Langendijk, J. A., & Both, S. (2020). Validation of the proton range accuracy and optimization of CT calibration curves utilizing range probing. Physics in Medicine and Biology, 65(3), [03NT02]. https://doi.org/10.1088/1361-6560/ab66e1

Akhavanallaf, A., Xie, T., & Zaidi, H. (2020). Assessment of uncertainties associated with Monte Carlo-based personalized dosimetry in clinical CT examinations. Physics in Medicine and Biology, 65(4), [045008]. https://doi.org/10.1088/1361-6560/ab6b45

Sanaat, A., Arabi, H., Ay, M. R., & Zaidi, H. (2020). Novel preclinical PET geometrical concept using a monolithic scintillator crystal offering concurrent enhancement in spatial resolution and detection sensitivity: a simulation study. Physics in Medicine and Biology, 65(4), [045013]. https://doi.org/10.1088/1361-6560/ab63ef

Wagenaar, D., Tran, L. T., Meijers, A., Marmitt, G. G., Souris, K., Bolst, D., James, B., Biasi, G., Povoli, M., Kok, A., Traneus, E., van Goethem, M-J., Langendijk, J. A., Rosenfeld, A. B., & Both, S. (2020). Validation of linear energy transfer computed in a Monte Carlo dose engine of a commercial treatment planning system. Physics in Medicine and Biology, 65(2), [025006]. https://doi.org/10.1088/1361-6560/ab5e97

Seller Oria, C., Marmitt, G. G., Both, S., Langendijk, J. A., Knopf, A-C., & Meijers, A. (2020). Classification of various sources of error in range assessment using proton radiography and neural networks in head and neck cancer patients. Physics in Medicine and Biology, (23). https://doi.org/10.1088/1361-6560/abc09c

Ozoemelam, I. S., van der Graaf, E. R., Brandenburg, S., & Dendooven, P. (2019). The production of positron emitters with millisecond half-life during helium beam radiotherapy. Physics in Medicine and Biology, 64(23), [235012]. https://doi.org/10.1088/1361-6560/ab51c3

Makkia, R., Nelson, K., Zaidi, H., & Dingfelder, M. (2019). Construction of realistic hybrid computational fetal phantoms from radiological images in three gestational ages for radiation dosimetry applications. Physics in Medicine and Biology, 64(20), [205003]. https://doi.org/10.1088/1361-6560/ab44f8

Qiu, B., Guo, J., Kraeima, J., Glas, H. H., Borra, R. J. H., Witjes, M. J. H., & van Ooijen, P. M. A. (2019). Automatic segmentation of the mandible from computed tomography scans for 3D virtual surgical planning using the convolutional neural network. Physics in Medicine and Biology, 64(17), [175020]. https://doi.org/10.1088/1361-6560/ab2c95

Bertholet, J., Knopf, A., Eiben, B., McClelland, J., Grimwood, A., Harris, E., Menten, M., Poulsen, P., Doan Trang Nguyen, Keall, P., & Oelfke, U. (2019). Real-time intrafraction motion monitoring in external beam radiotherapy. Physics in Medicine and Biology, 64(15), [ARTN 15TRO1]. https://doi.org/10.1088/1361-6560/ab2ba8

Fatnassi, C., & Zaidi, H. (2019). Fast and accurate pseudo multispectral technique for whole-brain MRI tissue classification. Physics in Medicine and Biology, 64(14), [145005]. https://doi.org/10.1088/1361-6560/ab239e

Dendooven, P., Buitenhuis, H. J. T., Diblen, F., Heeres, P. N., Biegun, A. K., Fiedler, F., van Goethem, M-J., van der Graaf, E. R., & Brandenburg, S. (2019). Corrigendum: Short-lived positron emitters in beam-on PET imaging during proton therapy (2015 Phys. Med. Biol. 60 8923). Physics in Medicine and Biology, 64(12), [129501]. https://doi.org/10.1088/1361-6560/ab23d7

Guerreiro, F., Koivula, L., Seravalli, E., Janssens, G. O., Maduro, J. H., Brouwer, C. L., Korevaar, E. W., Knopf, A-C., Korhonen, J., & Raaymakers, B. W. (2019). Feasibility of MRI-only photon and proton dose calculations for pediatric patients with abdominal tumors. Physics in Medicine and Biology, 64(5), [055010]. https://doi.org/10.1088/1361-6560/ab0095

Arabi, H., & Zaidi, H. (2018). Improvement of image quality in PET using post-reconstruction hybrid spatial-frequency domain filtering. Physics in Medicine and Biology, 63(21), [215010]. https://doi.org/10.1088/1361-6560/aae573

Fatnassi, C., & Zaidi, H. (2018). Robust selective weighted field mapping using multi-echo gradient echo-based MRI. Physics in Medicine and Biology, 63(21), [215002]. https://doi.org/10.1088/1361-6560/aae570

Kierkels, R. G. J., den Otter, L. A., Korevaar, E. W., Langendijk, J. A., van der Schaaf, A., Knopf, A-C., & Sijtsema, N. M. (2018). An automated, quantitative, and case-specific evaluation of deformable image registration in computed tomography images. Physics in Medicine and Biology, 63, [045026]. https://doi.org/10.1088/1361-6560/aa9dc2

Cheng, J-C. K., Matthews, J., Sossi, V., Anton-Rodriguez, J., Salomon, A., & Boellaard, R. (2017). Incorporating HYPR de-noising within iterative PET reconstruction (HYPR-OSEM). Physics in Medicine and Biology, 62(16), 6666-6687. https://doi.org/10.1088/1361-6560/aa7b66

Xie, T., Kuster, N., & Zaidi, H. (2017). Effects of body habitus on internal radiation dose calculations using the 5-year-old anthropomorphic male models. Physics in Medicine and Biology, 62(15), 6185-6206. https://doi.org/10.1088/1361-6560/aa75b4

Buitenhuis, HJT., Diblen, F., Brzezinski, KW., Brandenburg, S., & Dendooven, P. (2017). Beam-on imaging of short-lived positron emitters during proton therapy. Physics in Medicine and Biology, 62(12), 4654-4672. https://doi.org/10.1088/1361-6560/aa6b8c

Burgos, N., Guerreiro, F., McClelland, J., Presles, B., Modat, M., Nill, S., Dearnaley, D., deSouza, N., Oelfke, U., Knopf, A-C., Ourselin, S., & Cardoso, M. J. (2017). Iterative framework for the joint segmentation and CT synthesis of MR images: application to MRI-only radiotherapy treatment planning. Physics in Medicine and Biology, 62(11), 4237-4253. https://doi.org/10.1088/1361-6560/aa66bf

Xie, T., Kuster, N., & Zaidi, H. (2017). Computational hybrid anthropometric paediatric phantom library for internal radiation dosimetry. Physics in Medicine and Biology, 62(8), 3263-3283. https://doi.org/10.1088/1361-6560/aa63d0

Dankers, F., Wijsman, R., Troost, E. G. C., Monshouwer, R., Bussink, J., & Hoffmann, A. L. (2017). Esophageal wall dose-surface maps do not improve the predictive performance of a multivariable NTCP model for acute esophageal toxicity in advanced stage NSCLC patients treated with intensity-modulated (chemo-)radiotherapy. Physics in Medicine and Biology, 62(9), 3668-3681. https://doi.org/10.1088/1361-6560/aa5e9e

Perrin, R. L., Zakova, M., Peroni, M., Bernatowicz, K., Bikis, C., Knopf, A. K., Safai, S., Fernandez-Carmona, P., Tscharner, N., Weber, D. C., Parkel, T. C., & Lomax, A. J. (2017). An anthropomorphic breathing phantom of the thorax for testing new motion mitigation techniques for pencil beam scanning proton therapy. Physics in Medicine and Biology, 62(6), 2486-2504. https://doi.org/10.1088/1361-6560/62/6/2486

Visser, R., Godart, J., Wauben, D. J. L., Langendijk, J. A., van't Veld, A. A., & Korevaar, E. W. (2016). Reconstruction of high resolution MLC leaf positions using a low resolution detector for accurate 3D dose reconstruction in IMRT. Physics in Medicine and Biology, 61(23), N642-N649. https://doi.org/10.1088/0031-9155/61/23/N642

Mans, A., Schuring, D., Arends, M. P., Vugts, C. A. J. M., Wolthaus, J. W. H., Lotz, H. T., Admiraal, M., Louwe, R. J. W., Ollers, M. C., & van de Kamer, J. B. (2016). The NCS code of practice for the quality assurance and control for volumetric modulated arc therapy. Physics in Medicine and Biology, 61(19), 7221-7235. https://doi.org/10.1088/0031-9155/61/19/7221

Arabi, H., Koutsouvelis, N., Rouzaud, M., Miralbell, R., & Zaidi, H. (2016). Atlas-guided generation of pseudo-CT images for MRI-only and hybrid PET-MRI-guided radiotherapy treatment planning. Physics in Medicine and Biology, 61(17), 6531-6552. https://doi.org/10.1088/0031-9155/61/17/6531

Karakatsanis, N. A., Casey, M. E., Lodge, M. A., Rahmim, A., & Zaidi, H. (2016). Whole-body direct 4D parametric PET imaging employing nested generalized Patlak expectation-maximization reconstruction. Physics in Medicine and Biology, 61(15), 5456-5485. https://doi.org/10.1088/0031-9155/61/15/5456

Solevi, P., Munoz, E., Solaz, C., Trovato, M., Dendooven, P., Gillam, J. E., Lacasta, C., Oliver, J. F., Rafecas, M., Torres-Espallardo, I., & Llosa, G. (2016). Performance of MACACO Compton telescope for ion-beam therapy monitoring: First test with proton beams. Physics in Medicine and Biology, 61(14), 5149-5165. https://doi.org/10.1088/0031-9155/61/14/5149

Farace, P., Righetto, R., & Meijers, A. (2016). Pencil beam proton radiography using a multilayer ionization chamber. Physics in Medicine and Biology, 61(11), 4078-4087. https://doi.org/10.1088/0031-9155/61/11/4078

Kotasidis, F. A., Mehranian, A., & Zaidi, H. (2016). Impact of time-of-flight on indirect 3D and direct 4D parametric image reconstruction in the presence of inconsistent dynamic PET data. Physics in Medicine and Biology, 61(9), 3443-3471. https://doi.org/10.1088/0031-9155/61/9/3443

Visser, R., Godart, J., Wauben, D. J. L., Langendijk, J. A., van't Veld, A. A., & Korevaar, E. W. (2016). Development of an iterative reconstruction method to overcome 2D detector low resolution limitations in MLC leaf position error detection for 3D dose verification in IMRT. Physics in Medicine and Biology, 61(10), 3843-3856. https://doi.org/10.1088/0031-9155/61/10/3843

Mehranian, A., Kotasidis, F., & Zaidi, H. (2016). Accelerated time-of-flight (TOF) PET image reconstruction using TOF bin subsetization and TOF weighting matrix pre-computation. Physics in Medicine and Biology, 61(3), 1309-1331. https://doi.org/10.1088/0031-9155/61/3/1309

Dendooven, P., Buitenhuis, H. J. T., Diblen, F., Heeres, P. N., Biegun, A. K., Fiedler, F., van Goethem, M-J., van der Graaf, E. R., & Brandenburg, S. (2015). Short-lived positron emitters in beam-on PET imaging during proton therapy. Physics in Medicine and Biology, 60(23), 8923-8947. https://doi.org/10.1088/0031-9155/60/23/8923

Karakatsanis, N. A., Zhou, Y., Lodge, M. A., Casey, M. E., Wahl, R. L., Zaidi, H., & Rahmim, A. (2015). Generalized whole-body Patlak parametric imaging for enhanced quantification in clinical PET. Physics in Medicine and Biology, 60(22), 8643-8673. https://doi.org/10.1088/0031-9155/60/22/8643

Zhang, Y., Knopf, A-C., Weber, D. C., & Lomax, A. J. (2015). Improving 4D plan quality for PBS-based liver tumour treatments by combining online image guided beam gating with rescanning. Physics in Medicine and Biology, 60(20), 8141-8159. https://doi.org/10.1088/0031-9155/60/20/8141

Mehranian, A., & Zaidi, H. (2015). Emission-based estimation of lung attenuation coefficients for attenuation correction in time-of-flight PET/MR. Physics in Medicine and Biology, 60(12), 4813-4833. https://doi.org/10.1088/0031-9155/60/12/4813

Schumann, A., Petzoldt, J., Dendooven, P., Enghardt, W., Golnik, C., Hueso-Gonzalez, F., Kormoll, T., Pausch, G., Roemer, K., & Fiedler, F. (2015). Simulation and experimental verification of prompt gamma-ray emissions during proton irradiation. Physics in Medicine and Biology, 60(10), 4197-4207. https://doi.org/10.1088/0031-9155/60/10/4197

van Abbema, J. K., van Goethem, M-J., Greuter, M. J. W., van der Schaaf, A., Brandenburg, S., & van der Graaf, E. R. (2015). Relative electron density determination using a physics based parameterization of photon interactions in medical DECT. Physics in Medicine and Biology, 60(9), 3825-3846. https://doi.org/10.1088/0031-9155/60/9/3825

Zhang, Y., Knopf, A., Tanner, C., & Lomax, A. J. (2014). Online image guided tumour tracking with scanned proton beams: a comprehensive simulation study. Physics in Medicine and Biology, 59(24), 7793-817. https://doi.org/10.1088/0031-9155/59/24/7793

Kotasidis, F. A., Matthews, J. C., Reader, A. J., Angelis, G. I., & Zaidi, H. (2014). Application of adaptive kinetic modelling for bias propagation reduction in direct 4D image reconstruction. Physics in Medicine and Biology, 59(20), 6061-6084. https://doi.org/10.1088/0031-9155/59/20/6061

Golnik, C., Hueso-Gonzalez, F., Muller, A., Dendooven, P., Enghardt, W., Fiedler, F., Kormoll, T., Roemer, K., Petzoldt, J., Wagner, A., & Pausch, G. (2014). Range assessment in particle therapy based on prompt gamma-ray timing measurements. Physics in Medicine and Biology, 59(18), 5399-5422. https://doi.org/10.1088/0031-9155/59/18/5399

Wéra, A-C., Barazzuol, L., Jeynes, J. C. G., Merchant, M. J., Suzuki, M., & Kirkby, K. J. (2014). Influence of the nucleus area distribution on the survival fraction after charged particles broad beam irradiation. Physics in Medicine and Biology, 59(15), 4197-4211. https://doi.org/10.1088/0031-9155/59/15/4197

Xie, T., & Zaidi, H. (2014). Evaluation of radiation dose to anthropomorphic paediatric models from positron-emitting labelled tracers. Physics in Medicine and Biology, 59(5). https://doi.org/10.1088/0031-9155/59/5/1165