Dataset

Dataset: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

Monge Gomes do Couto, N. (Creator), Schuele, L. (Creator), Raangs, G. (Creator), Machado, M. P. (Creator), Marques de Sousa Mendes, C. (Creator), Jesus, T. F. (Creator), Chlebowicz, M. (Creator), Rosema, S. (Creator), Ramirez, M. (Creator), Carriço, J. A. (Creator), Autenrieth, I. B. (Creator), Friedrich, A. (Creator), Peter, S. (Creator), Rossen, J. (Creator), University of Groningen, 10-May-2018

Dataset

  • Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal.

Description

Paired-trimmed-un-mapped reads (hg19) generated for each sample have been submitted to SRA under project number SRP126380
cgMLST and accessory ref-seq
Date made available10-May-2018
PublisherUniversity of Groningen
Access to the dataset Open
Contact researchdata@rug.nl

    Keywords on Datasets

  • Health, Shotgun metagenomics, Microbiology, SMg, Escherichia coli, E-coli, Staphylococcus epidermidis, antimicrobial resistance
Related Publications
  1. Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

    Couto, N., Schuele, L., Raangs, E. C., Machado, M. P., Mendes, C. I., Jesus, T. F., Chlebowicz, M., Rosema, S., Ramirez, M., Carriço, J. A., Autenrieth, I. B., Friedrich, A. W., Peter, S. & Rossen, J. W., 13-Sep-2018, In : Scientific Reports. 8, 1, 13 p., 13767.

    Research output: Contribution to journalArticleAcademicpeer-review

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ID: 94923997