Dataset
Database related to: An open-source platform for analyzing and sharing worm-behavior data
Javer, A. (Creator), Currie, M. (Creator), Lee, C. W. (Creator), Hokanson, J. (Creator), Li, K. (Creator), Martineau, C. (Creator), Yemini, E. (Creator), Grundy, L. J. (Creator), Li, C. (Creator), Ch'ng, Q. (Creator), Schafer, W. R. (Creator), Nollen, E. (Creator), Kerr, R. (Creator) & Brown, A. E. X. (Creator), Movement OpenWorm, 28-Mar-2018
http://movement.openworm.org/ and 3 more links, https://zenodo.org/communities/open-worm-movement-database/, https://doi.org/10.5281/zenodo.1323782, http://ver228.github.io/tierpsy-tracker/ (show fewer)
Dataset
Links
- Avelino Javer (Creator)
- Michael Currie (Creator)
- Chee Wai Lee (Creator)
- Jim Hokanson (Creator)
- Kezhi Li (Creator)
- Celine Martineau (Creator)
- Eviatar Yemini (Creator)
- Laura J Grundy (Creator)
- Chris Li (Creator)
- QueeLim Ch'ng (Creator)
- William R. Schafer (Creator)
- Ellen Nollen (Creator)
- Rex Kerr (Creator)
- André E X Brown (Creator)
Description
The database currently (Spring 2018) consists of 14,874 single-worm tracking experiments representing 386 genotypes (building on 9,203 experiments and 305 genotypes in a previous publication2) and includes data from several larval stages as well as data from aging experiments consisting of more than 2,700 videos of animals tracked daily from the L4 stage to death (Nature Research Reporting Summary). Full-resolution videos are available in HDF5 containers that include gzip-compressed video frames, time stamps, worm outlines and midlines, feature data, and experimental metadata. HDF5 files are compatible with multiple languages including MATLAB, R, Python, and C. We have also developed an HDF5 video reader that allows video playback with adjustable speed and zoom (an important feature for reviewing high-resolution multiworm tracking data), as well as toggling of worm segmentation over the original video to verify segmentation accuracy during playback.
Date made available | 28-Mar-2018 |
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Publisher | Movement OpenWorm |
Geographical coverage | Global |
Access to the dataset | Open |
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Contact | researchdata@rug.nl |
- computational ethology, Caenorhabditis elegans, behavioural data, behavioural methods, Databases, High-throughput Screening, Machine learning, software, Biology of Aging, tierpsychology, Strain, Genes, Alleles
Keywords on Datasets
Related Publications
An open-source platform for analyzing and sharing worm-behavior data
Javer, A., Currie, M., Lee, C. W., Hokanson, J., Li, K., Martineau, C. N., Yemini, E., Grundy, L. J., Li, C., Ch'ng, Q., Schafer, W. R., Nollen, E. A. A., Kerr, R. & Brown, A. E. X., Sep-2018, In : Nature Methods. 15, 9, p. 645-646 2 p.Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review
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Dataset
ID: 65498128