1 | Advanced product engineering | WMCE007-05 |
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2 | Advanced Protein Crystallography | WMBS008-05 |
This course will provide insights on the important fundamentals and practices of protein X-ray crystallography. The aims of the course are to learn how protein crystal structures are determined, and to acquire the knowledge and skills necessary for critically analysing a 3D crystal structure. Subjects discussed during the course are:
• Protein crystallization and crystal geometry; • Basic diffraction theory; • X-ray instrumentation; • Strategies for phase determination; • Basics of model building and refinement; • Structure validation: quality assessment of a protein crystal structure.
Lecture classes are combined with discussion/exercise sessions: students will obtain reading assignments, will have to answer exercises, and are requested to prepare questions and subjects for group discussions. The lecture/discussion/exercise course is complemented with a workshop on the use of the various protein crystallographic computer programs. |
Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | dr. A.M.W.H. Thunnissen | Docent(en) | dr. A. Guskovdr. A.M.W.H. Thunnissen | Onderwijsvorm | Hoorcollege (LC), Practisch werk (PRC) | Toetsvorm | Practisch werk (PR), Schriftelijk tentamen (WE) | ECTS | 5 | Entreevoorwaarden | The course unit assumes prior knowledge acquired from relevant courses in Bachelor’s programmes in Chemistry and/or in Biology, covering the following subjects: fundamentals of protein structure, mathematics (basic calculus and vectors), biophysical chemistry. Relevant courses in the BSc Chemistry and BSc Biology or LS&T programmes at the University of Groningen: Calculus I (WICAL1-12), Biochemistry (CHBC-10), Recombinant DNA and Biotechnology (CHRDNAB-11), Cell physiology: Energy and Structure (WLP10B18), Structural Biology (WLP10B22), Mathematics for Life Sciences (WLP10B22). | Opmerkingen | Students from the degree programme Biomolecular Sciences have priority, to register please send an email to: academicadvisor.mscbio@rug.nl
Maximum capacity is 24 students.
Dit vak had vorig jaar vakcode MLBB007 |
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3 | Advanced Quantum Mechanics | WMPH032-05 |
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4 | Advances in Chemical Biology | WMCH014-05 |
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5 | Biomaterials 2 | WMBE001-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | dr. P. van Rijn | Docent(en) | | Onderwijsvorm | Bijeenkomst (S), Opdracht (ASM), Hoorcollege (LC) | Toetsvorm | Opdracht (AST) | ECTS | 5 |
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6 | Biophysical Imaging & Manipulation Techniques | WMPH047-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. W.H. Roos | Docent(en) | prof. dr. W.H. Roos | Onderwijsvorm | Hoorcollege (LC), Practisch werk (PRC), Werkcollege (T) | Toetsvorm | Presentatie (P), Schriftelijk tentamen (WE), Verslag (R) | ECTS | 5 |
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7 | Colloquium | WMCH001-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | C. Mayer, PhD. | Docent(en) | C. Mayer, PhD. | Onderwijsvorm | Hoorcollege (LC), Werkcollege (T) | Toetsvorm | Presentatie (P), Verslag (R) | ECTS | 5 |
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8 | Computational Chemistry | WMCH022-05 |
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9 | Computational physics | WMPH007-05 |
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10 | Design of Industrial Catalysts | WMCE009-05 |
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11 | Final Exam | WMCH002-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | dr. R.W.A. Havenith | Docent(en) | | Toetsvorm | Mondeling tentamen (OR) | ECTS | 5 |
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12 | Functional Properties | WMPH015-05 |
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13 | Intensive course TCCM | WMCH026-30 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. S.S. Faraji | Docent(en) | prof. dr. S.S. Faraji | Onderwijsvorm | Hoorcollege (LC), Practisch werk (PRC) | Toetsvorm | Tussentoets (IT), Practisch werk (PR) | ECTS | 30 |
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14 | Interfacial engineering | WMCE003-05 |
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15 | Introduction to plasma physics | WMPH035-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | dr. C.E. Rigollet | Docent(en) | dr. C.E. Rigollet | Onderwijsvorm | Werkcollege (T), Hoorcollege (LC), Opdracht (ASM) | Toetsvorm | Opdracht (AST), Presentatie (P), Schriftelijk tentamen (WE), Verslag (R) | ECTS | 5 |
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16 | Many-particle systems | WMPH036-05 |
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17 | Mathematical Methods of Physics | WMPH016-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | R. Klein, PhD. | Docent(en) | R. Klein, PhD. | Onderwijsvorm | Werkcollege (T), Hoorcollege (LC), Opdracht (ASM) | Toetsvorm | Opdracht (AST) | ECTS | 5 |
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18 | Mesoscopic physics | WMPH037-05 |
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19 | Molecular Dynamics | WMBS003-05 |
Together with experiment and theory, computational modeling is one of the three pillars of modern science. In chemistry as well as in life sciences, modeling of the interactions between molecules is essential to understand the emerging behavior of complex systems. In particular the Molecular Dynamics (MD) simulation technique provides a detailed view of the behavior of molecules in space and time, at a resolution that cannot be attained by any single experimental technique.
In a series of lectures, the underlying theory (statistical thermodynamics), the diversity of molecular models (atomistic, coarse-grained), and numerical techniques (integration of Newton's equations of motion) used in MD simulations will be discussed. Applications of the technique will be shown, with a focus on simulation of biomolecular processes.
An important part of the course is hands-on experience using the GROMACS modeling software in a series of tutorials and practicals covering the basics of the techniques and selected applications, e.g. selfassembly of lipids in water or sampling the conformational space of proteins. |
Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. S.J. Marrink | Docent(en) | dr. A.H. de Vriesprof. dr. S.J. Marrink | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Practisch werk (PRC) | Toetsvorm | Practisch werk (PR), Presentatie (P), Schriftelijk tentamen (WE) | ECTS | 5 | Entreevoorwaarden | The course unit assumes prior knowledge acquired from Calculus, Classical Mechanics, Introduction to Thermodynamics, and Structural Biology, all at Bachelor Life Science and Technology level. This material is offered in various Life Science, Chemistry, and Physics courses. | Opmerkingen | Students from the degree programme Biomolecular Sciences have priority, to register please send an email to: academicadvisor.mscbio@rug.nl
Max. 30 students
Dit vak had vorig jaar vakcode MLBB005 |
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20 | Molecular Quantum Mechanics 1 | WMCH010-05 |
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21 | Molecular Quantum Mechanics 2 | WMCH016-05 |
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22 | Nanomedicine and nanosafety | WMFA047-05 |
This course covers the following topics: • nanomedicine for drug delivery and drug targeting • nanomedicine applications other than drug delivery and drug targeting (organ-on-a-chip devices, tissue regeneration, stem cell differentiation and assisted surgery) • overview of main classes of nanomedicines, such as lipid based drug carriers, polymer based drug carriers, inorganic nanoparticles, antibodies and immunoconjugates, biomimetic materials, viral based nanocarriers • drug carriers and targeted drugs currently on the market and in clinical trials • challenges in nanomaterial design for successful targeting and barriers to drug delivery; • methods to characterize nano-sized drug carriers after synthesis and once applied in biological environments (size, charge, stability in biological fluids such as blood); • behavior of nano-sized materials at cellular and and organism level (uptake, distribution, final fate, eventual effects on cellular functions); • potential risks and safety concerns for nanomedicines and nano-sized materials not intended to be in contact with humans and living organisms (other nanotechnologies). |
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23 | Non-linear optics | WMPH024-05 |
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24 | Organic Synthesis: Methods and Strategy 1 | WMCH017-05 |
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25 | Organic Synthesis, Methods and Strategy 2 | WMCH024-05 |
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26 | Organometallic Chemistry | WMCH018-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. E. Otten | Docent(en) | prof. dr. E. Otten | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Werkcollege (T) | Toetsvorm | Opdracht (AST), Schriftelijk tentamen (WE) | ECTS | 5 |
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27 | Physical Methods for Chemical Analysis | WMCH012-05 |
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28 | Physics of Lasers | WMPH027-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. R.M. Hildner | Docent(en) | prof. dr. R.M. Hildner | Onderwijsvorm | Hoorcollege (LC), Practisch werk (PRC) | Toetsvorm | Mondeling tentamen (OR), Schriftelijk tentamen (WE) | ECTS | 5 |
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29 | Polymer Physics | WMCH025-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. G. Portale | Docent(en) | prof. dr. G. Portale | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Werkcollege (T) | Toetsvorm | Presentatie (P), Schriftelijk tentamen (WE), Verslag (R) | ECTS | 5 |
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30 | Polymer products | WMCE005-05 |
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31 | Product Focused Process Design | WMCE011-05 |
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32 | Quantum field theory | WMPH018-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. E. Pallante | Docent(en) | M.R. Boers, MSc.prof. dr. E. Pallante | Onderwijsvorm | Werkcollege (T), Hoorcollege (LC), Opdracht (ASM) | Toetsvorm | Schriftelijk tentamen (WE) | ECTS | 5 | Entreevoorwaarden | Quantum mechanics, Relativistic Quantum Mechanics |
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33 | Reaction Mechanisms | WMCH006-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. S. Otto | Docent(en) | prof. dr. S. Otto | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM) | Toetsvorm | Schriftelijk tentamen (WE) | ECTS | 5 |
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34 | Research Project TCCM | WMCH902-30 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. S.S. Faraji | Docent(en) | | Onderwijsvorm | Practisch werk (PRC), Bijeenkomst (S) | Toetsvorm | Tussentoets (IT), Practisch werk (PR), Presentatie (P), Verslag (R) | ECTS | 30 |
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35 | Scientific Integrity | WMCH007-00 |
Note: Scientific integrity will be offered in Ia and IIa. You only have to participate this meeting once during your master degree.
This course unit consists of one mandatory lecture. Attendance at this lecture is required to pass the course. The student will be exposed to various topics on the research misconduct in plagiarism, proper way of allocating credit, whistleblowing. The course will also include case studies for typical examples of research misconduct. The case study will be also extended to two famous real cases in research history. |
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36 | Statistical methods in physics | WMPH030-05 |
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37 | Statistical Signal Processing | WMAS011-05 |
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38 | Stereochemistry | WMCH013-05 |
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39 | Structure determination with spectroscopic methods | WMCH008-05 |
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40 | Supramolecular chemistry | WMCH020-05 |
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41 | Surface Engineering and Coating Technology | WMIE013-05 |
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Faculteit | Science and Engineering | Voertaal | Engels | Coordinator | prof. dr. Y. Pei | Docent(en) | prof. dr. Y. Pei | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Werkcollege (T) | Toetsvorm | Opdracht (AST), Schriftelijk tentamen (WE), Verslag (R) | ECTS | 5 |
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42 | Synthetic Biology and Systems Chemistry | WMCH021-05 |
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43 | Theoretical condensed matter physics | WMPH031-05 |
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44 | Topics in chemistry with Python | WMCH028-05 |
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45 | Ultrafast Time-Resolved Spectroscopy | WMPH040-05 |
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