| 1 | Advanced Protein Crystallography | WMBS008-05 |
This course will provide insights on the important fundamentals and practices of protein X-ray crystallography. The aims of the
course are to learn how protein crystal structures are determined, and to acquire the knowledge and skills necessary for critically
analysing a 3D crystal structure.
Subjects discussed during the course are:
• Protein crystallization and crystal geometry;
• Basic diffraction theory;
• X-ray instrumentation;
• Strategies for phase determination;
• Basics of model building and refinement;
• Structure validation: quality assessment of a protein crystal structure.
Lecture classes are combined with discussion/exercise sessions: students will obtain reading assignments, will have to answer exercises, and are requested to prepare questions and subjects for group discussions. The lecture/discussion/exercise course is complemented with a workshop on the use of the various protein crystallographic computer programs. |
| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | dr. A.M.W.H. Thunnissen | | Docent(en) | dr. A. Guskovdr. A.M.W.H. Thunnissen | | Onderwijsvorm | Hoorcollege (LC), Practisch werk (PRC) | | Toetsvorm | Practisch werk (PR), Schriftelijk tentamen (WE) | | ECTS | 5 | | Entreevoorwaarden | The course unit assumes prior knowledge acquired from relevant courses in Bachelor’s programmes in Chemistry and/or in Biology, covering the following subjects: fundamentals of protein structure, mathematics (basic calculus and vectors), biophysical chemistry. Relevant courses in the BSc Chemistry and BSc Biology or LS&T programmes at the University of Groningen: Calculus I (WICAL1-12), Biochemistry (CHBC-10), Recombinant DNA and Biotechnology (CHRDNAB-11), Cell physiology: Energy and Structure (WLP10B18), Structural Biology (WLP10B22), Mathematics for Life Sciences (WLP10B22). | | Opmerkingen | Students from the degree programme Biomolecular Sciences have priority, to register please send an email to: academicadvisor.mscbio@rug.nl
Maximum capacity is 24 students.
Dit vak had vorig jaar vakcode MLBB007 |
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| 2 | Advances in Chemical Biology | WMCH014-05 |
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| 3 | Astrochemistry (21/22) | WMAS018-05 |
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| 4 | Bio-based Products | WMCE001-05 |
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| 5 | Biocatalysis and Green Chemistry | WMCH027-05 |
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| 6 | Bioinspired Designer Materials | WMCH009-05 |
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| 7 | Biomaterials 2 | WMBE001-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | dr. P. van Rijn | | Docent(en) | | | Onderwijsvorm | Bijeenkomst (S), Opdracht (ASM), Hoorcollege (LC) | | Toetsvorm | Opdracht (AST) | | ECTS | 5 |
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| 8 | Biophysical Imaging & Manipulation Techniques | WMPH047-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | prof. dr. W.H. Roos | | Docent(en) | prof. dr. W.H. Roos | | Onderwijsvorm | Hoorcollege (LC), Practisch werk (PRC), Werkcollege (T) | | Toetsvorm | Presentatie (P), Schriftelijk tentamen (WE), Verslag (R) | | ECTS | 5 |
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| 9 | Chemical Catalysis | WMCH015-05 |
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| 10 | Colloquium | WMCH001-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | C. Mayer, PhD. | | Docent(en) | C. Mayer, PhD. | | Onderwijsvorm | Hoorcollege (LC), Werkcollege (T) | | Toetsvorm | Presentatie (P), Verslag (R) | | ECTS | 5 |
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| 11 | Computational Chemistry | WMCH022-05 |
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| 12 | Cross-disciplinary Materials Science | WMCH003-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | prof. dr. S.S. Faraji | | Docent(en) | prof. dr. S.S. Faraji | | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Werkcollege (T) | | Toetsvorm | Opdracht (AST), Presentatie (P), Schriftelijk tentamen (WE), Verslag (R) | | ECTS | 5 |
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| 13 | Design of Industrial Catalysts | WMCE009-05 |
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| 14 | Final Exam | WMCH002-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | dr. R.W.A. Havenith | | Docent(en) | | | Toetsvorm | Mondeling tentamen (OR) | | ECTS | 5 |
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| 15 | Functional Properties | WMPH015-05 |
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| 16 | Interfacial engineering | WMCE003-05 |
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| 17 | Introduction Science and Business | WMSE001-10 |
This module will take place in two phases.
1. Theory Science and Business
2. Group project Science and Business
In the first three weeks you will follow an intensive program in which you get acquainted with important business concepts. After that you will train the skills to solve business cases and to write and present a feasible science advise to company owners. Most assignments will be done in groups and teams.
For more information see www.rug.nl/fwn/sbp |
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| 18 | Introduction Science and Policy | WMSE002-10 |
This module will take place in two phases.
1. Theory Science and Policy
2. Group project Science and Policy
In the first three weeks you will follow an intensive program in which you get acquainted with important policy concepts. After that you will train the skills to solve policy cases and to write and present a feasible science advise to governmental organisations. Most assignments will be done in groups and teams.
For more information see www.rug.nl/fwn/sbp |
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| 19 | Molecular Dynamics | WMBS003-05 |
Together with experiment and theory, computational modeling is one of the three pillars of modern science.
In chemistry as well as in life sciences, modeling of the interactions between molecules is essential to understand the emerging behavior of complex systems. In particular the Molecular Dynamics (MD) simulation technique provides a detailed view of the behavior of molecules in space and time, at a resolution that cannot be attained by any single experimental technique.
In a series of lectures, the underlying theory (statistical thermodynamics), the diversity of molecular models (atomistic, coarse-grained), and numerical techniques (integration of Newton's equations of motion) used in MD simulations will be discussed. Applications of the technique will be shown, with a focus on simulation of biomolecular processes.
An important part of the course is hands-on experience using the GROMACS modeling software in a series of tutorials and practicals covering the basics of the techniques and selected applications, e.g. selfassembly of lipids in water or sampling the conformational space of proteins. |
| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | prof. dr. S.J. Marrink | | Docent(en) | dr. A.H. de Vriesprof. dr. S.J. Marrink | | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Practisch werk (PRC) | | Toetsvorm | Practisch werk (PR), Presentatie (P), Schriftelijk tentamen (WE) | | ECTS | 5 | | Entreevoorwaarden | The course unit assumes prior knowledge acquired from Calculus, Classical Mechanics, Introduction to
Thermodynamics, and Structural Biology, all at Bachelor Life Science and Technology level. This material is
offered in various Life Science, Chemistry, and Physics courses. | | Opmerkingen | Students from the degree programme Biomolecular Sciences have priority, to register please send an email to: academicadvisor.mscbio@rug.nl
Max. 30 students
Dit vak had vorig jaar vakcode MLBB005 |
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| 20 | Molecular Quantum Mechanics 1 | WMCH010-05 |
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| 21 | Molecular Quantum Mechanics 2 | WMCH016-05 |
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| 22 | Organic Synthesis: Methods and Strategy 1 | WMCH017-05 |
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| 23 | Organic Synthesis, Methods and Strategy 2 | WMCH024-05 |
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| 24 | Organometallic Chemistry | WMCH018-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | prof. dr. E. Otten | | Docent(en) | prof. dr. E. Otten | | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Werkcollege (T) | | Toetsvorm | Opdracht (AST), Schriftelijk tentamen (WE) | | ECTS | 5 |
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| 25 | Photovoltaics Science and Energy | WMCH011-05 |
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| 26 | Physical Methods for Chemical Analysis | WMCH012-05 |
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| 27 | Polymer Lab Course 3 | WMCH005-05 |
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| 28 | Polymer Physics | WMCH025-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | G. Portale, PhD. | | Docent(en) | G. Portale, PhD. | | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Werkcollege (T) | | Toetsvorm | Presentatie (P), Schriftelijk tentamen (WE), Verslag (R) | | ECTS | 5 |
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| 29 | Polymer products | WMCE005-05 |
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| 30 | Product Focused Process Design | WMCE011-05 |
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| 31 | Reaction Mechanisms | WMCH006-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | prof. dr. S. Otto | | Docent(en) | prof. dr. S. Otto | | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM) | | Toetsvorm | Schriftelijk tentamen (WE) | | ECTS | 5 |
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| 32 | Skills in Science Communication | WMEC006-05 |
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| 33 | Stagetraject bedrijf en beleid | WMSE901-40 |
This module is structured as follows:
1. Preparation Internship (2 weeks, end of december)
2. Writing Plan of Action at company or policy organization (4 weeks)
3. Internship (8 weeks)
4. Reflection days (1 week)
5. Internship (3 months)
6. Wrap up (1 week)
During the internship outside university they acts as a science advisor, who analyses a business or policy problem that needs scientific knowledge to solve it. The student then writes a report with well-argued suggestions to solve the problem.
The student implements the skills he/she has learned in the modules Science and Business and Science and Policy. The students gets acquainted with the organization (structure, culture, personality) by performing tasks within the organization. Thus the student gets an valuable experience in a multidisciplinary environment.
The internship starts in January and ends in June/July. The student must find an internship by himself, with help of the SBP-staff. It is important to start looking as soon as possible.
The student is supervised by a SBP-staff member, a beta science staff member and a supervisor of the organization where the internship takes place.
The internship should have a beta science aspect (25-50%), a business and/or policy aspect (25-50%) and sufficient prospects for implementation of the advice. |
| Faculteit | Science and Engineering | | Voertaal | Engels en Nederlands | | Coordinator | drs. S. Grooters | | Docent(en) | drs. M.R. Bergerdr. M.K. Boer, deprof. dr. G.J.W. Euverinkdrs. S. Grootersdrs. S. Grootersdrs. C.M. Reedrs. C.M. Reedr. M. van Rijssel J. Zevenberg | | ECTS | 40 | | Entreevoorwaarden | First year master FMNS including first master research project
Modules Science and Business and Science and Policy
Course Acquisition Tools & Career Management
See also www.rug.nl/fse/sbp | | Opmerkingen | From those who enroll between April 1 and April 14, second year master students who will do the entire SBP-variant have priority. After April 14, admission will be in order of registration.
The Science Business and Policy Master Track is in English. However, to some extent it can be considered bilingual. Some projects for Dutch organizations, especially policy organizations, can be in Dutch. Also some tutor groups for Dutch projects and personal development can be in Dutch. Some internship organizations prefer a Dutch advice report. In short, in projects and tutor groups the practical situation is leading, whereas international students will always be able to chose for an English project.
This course was registered last year with course code WNBIBEBS08 |
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| 34 | Stereochemistry | WMCH013-05 |
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| 35 | Structure at Macro, Meso and Nano Scale | WMPH020-05 |
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| 36 | Structure determination with spectroscopic methods | WMCH008-05 |
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| 37 | Supramolecular chemistry | WMCH020-05 |
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| 38 | Sustainability for Engineers | WMIE020-05 |
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| Faculteit | Science and Engineering | | Voertaal | Engels | | Coordinator | dr. ir. G.H. Jonker | | Docent(en) | dr. ir. G.H. Jonker | | Onderwijsvorm | Hoorcollege (LC), Opdracht (ASM), Werkcollege (T) | | Toetsvorm | Opdracht (AST) | | ECTS | 5 |
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| 39 | Synthetic Biology and Systems Chemistry | WMCH021-05 |
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| 40 | Topics in chemistry with Python | WMCH028-05 |
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