Publication

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

McMurry, J. A., Juty, N., Blomberg, N., Burdett, T., Conlin, T., Conte, N., Courtot, M., Deck, J., Dumontier, M., Fellows, D. K., Gonzalez-Beltran, A., Gormanns, P., Grethe, J., Hastings, J., Heriche, J-K., Hermjakob, H., Ison, J. C., Jimenez, R. C., Jupp, S., Kunze, J., Laibe, C., Le Novere, N., Malone, J., Martin, M. J., McEntyre, J. R., Morris, C., Muilu, J., Mueller, W., Rocca-Serra, P., Sansone, S-A., Sariyar, M., Snoep, J. L., Soiland-Reyes, S., Stanford, N. J., Swainston, N., Washington, N., Williams, A. R., Wimalaratne, S. M., Winfree, L. M., Wolstencroft, K., Goble, C., Mungall, C. J., Haendel, M. A. & Parkinson, H. 29-Jun-2017 In : PLOS BIOLOGY. 15, 6, 18 p., 2001414

Research output: Scientific - peer-reviewComment/Letter to the editor

  • Julie A. McMurry
  • Nick Juty
  • Niklas Blomberg
  • Tony Burdett
  • Tom Conlin
  • Nathalie Conte
  • Melanie Courtot
  • John Deck
  • Michel Dumontier
  • Donal K. Fellows
  • Alejandra Gonzalez-Beltran
  • Philipp Gormanns
  • Jeffrey Grethe
  • Janna Hastings
  • Jean-Karim Heriche
  • Henning Hermjakob
  • Jon C. Ison
  • Rafael C. Jimenez
  • Simon Jupp
  • John Kunze
  • Camille Laibe
  • Nicolas Le Novere
  • James Malone
  • Maria Jesus Martin
  • Johanna R. McEntyre
  • Chris Morris
  • Juha Muilu
  • Wolfgang Mueller
  • Philippe Rocca-Serra
  • Susanna-Assunta Sansone
  • Murat Sariyar
  • Jacky L. Snoep
  • Stian Soiland-Reyes
  • Natalie J. Stanford
  • Neil Swainston
  • Nicole Washington
  • Alan R. Williams
  • Sarala M. Wimalaratne
  • Lilly M. Winfree
  • Katherine Wolstencroft
  • Carole Goble
  • Christopher J. Mungall
  • Melissa A. Haendel
  • Helen Parkinson

In many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases). Wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers are a core component of this integration infrastructure. Drawing on our experience and on work by other groups, we outline 10 lessons we have learned about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers) should take in the design, provision and reuse of identifiers. We also outline the important considerations for those referencing identifiers in various circumstances, including by authors and data generators. While the importance and relevance of each lesson will vary by context, there is a need for increased awareness about how to avoid and manage common identifier problems, especially those related to persistence and web-accessibility/resolvability. We focus strongly on web-based identifiers in the life sciences; however, the principles are broadly relevant to other disciplines.

Original languageEnglish
Article number2001414
Number of pages18
JournalPLOS BIOLOGY
Volume15
Issue number6
StatePublished - 29-Jun-2017

    Keywords

  • GENE NAME ERRORS, ONTOLOGIES, COMMUNITY

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