2009

Andreote, F.D., Carneiro, R.T., Salles, J.F., Marcon, J., Labate, C.A., Azevedo, J.L. & Araújo, W.A. 2009. Culture-independent assessment of rhizobiales-related alphaproteobacteria and the diversity of methylobacterium in the rhizosphere and rhizoplane of transgenic eucalyptus. Microbial Ecology 57 (1): 82-93

 

Andreote, F.D., De Araujo, W.L, de Azevedo, J. L. , van Elsas, J. D. , Nunes da Rocha, U. & van Overbeek, L.S. 2009. Endophytic colonization of potato (Solanum tuberosum L.) by a novel competent bacterial endophyte, Pseudomonas putida Strain P9, and its effect on associated bacterial communities. Applied and Environmental Microbiology 75: 3396–3406.

 

Boersma, F.G.H., Warmink, J.A., Dini Andreote, F. & van Elsas, J.D. 2009. Selection of Sphingomonadaceae at the base of  Laccaria proxima and Russula exalbicans fruiting bodies. Applied and Environmental Microbiology 75: 1979-1989.

 

Hardoim, C.C.P.,  Costa, R., Araujo, F.V., Hajdu, E.,  Peixoto, R., Lins, U., Rosado, A.S. & van Elsas, J.D. 2009. Diversity of bacteria in the marine sponge Aplysina fulva in brazilian coastal waters. Applied and Environmental Microbiology. 75: 3331-3343.

 

Van Elsas, J.D. 2009. The metagenomics of disease-suppressive soils. MARCO Symposium Proceedings, Oct. 2009, Tsukuba, Japan.

 

Nazir, R., Warmink, J.A., Boersma, H., & van Elsas., J.D. 2009. Mechanisms that promote bacterial fitness in fungal-affected soil microhabitats. FEMS Microbiol. Ecol. 71: 169-185.

 

Nissinen, R., Xia, Y., Mattinen, L., Ishimaru, C.A., Knudson D.L., Brown, S. Metzler M.C. & Pirhonen, M. 2009. Putative secreted protease Chp-7 of Clavibacter michiganensis subsp. sepedonicus is needed for full virulence and for induction of hypersensitive response. Molecular Plant-Microbe Interact. 22(7), 809-819.

 

Nunes da Rocha, U, Andreoti, F.D., Azevedo, J.L., van Elsas, J.D. & van Overbeek, L. 2009. Cultivation of hitherto uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum) rhizosphere. J Soil Sediments DOI 10.1007/s11368-009-0160-3

 

Nunes da Rocha, U., van Overbeek L. & van Elsas., J.D., 2009. Exploration of hitherto-uncultured bacteria from the rhizosphere. FEMS Microbiol. Ecol. 69: 313-328.

 

Salles, J.F., Poly.F.,  Schmid, B., & Le Roux, X. 2009. Community niche predicts the functioning of denitrifying bacterial assemblages Ecology 90 (12): 3324-3332

 

Semenov, A.V., Franz, E., & van Bruggen, A.H.C. 2010. COLIWAVE a simulation model for survival of E. coli O157:H7 in dairy manure and manure-amended soil. Ecological Modelling 221: 599-609.

Semenov, A.V., van Overbeek, L., & van Bruggen, A.H.C. 2009. Influence of manure and slurry applications on Escherichia coli O157:H7 and Salmonella serovar Typhimurium survival and their translocation through a soil column. Applied and Environmental Microbiology 75: 3206-3215.

 

Taketani R.G ., dos Santos, H.F ., van Elsas, J.D ., & Rosado, A.S . 2009. Characterisation of the effect of a simulated hydrocarbon spill on diazotrophs in mangrove sediment mesocosm.   Ant. van Leeuwenh. 96: 343-354.

 

Trifonova, R., Babini, V., Postma, J., Ketelaars, J.J.M.H. & van Elsas, J.D. 2009. Colonization of torrefied grass fibers by plant-beneficial microorganisms. Appl. Soil Ecol. 41: 98-106.

 

Trifonova, R.,  Postma, J. & van Elsas, J.D. 2009. Interactions of  plant-beneficial bacteria with the ascomycete Coniochaeta ligniaria. J . Appl. Microbiol. 106: 1859-1866.

 

Trifonova, R., Postma, J., Schilder, M. & van Elsas, J.D.. 2009. Microbial enrichment of a novel growing substrate and its effect on plant growth. Microb. Ecol. 58: 632-641.

 

Tzeneva, V.A.,  Salles, J.F., Naumova, N., de Vos, W.M., Kuikman, P.J., Dolfing, J. & Smidt, H. 2009. Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity
Research in Microbiolog 160 (2): 89-98

 

Vogel, T.M., Hirsch, P., Simonet, P., Jansson, J.K, Tiedje, J., van Elsas, J.D., Nalin, R., Philippot, L. & Bailey. M.J. 2009. TerraGenome: a consortium for the sequencing of a soil metagenome. Nature Reviews Microbiology 7: 252.

 

Vogel, T.M., Hirsch, P., Simonet, P., Jansson, J.K., Tiedje, J., van Elsas, J.D., Nalin, R., Philippot, L. & Bailey, M.J. 2009. To sequence or not to sequence the whole-soil metagenome? Nature Reviews/Biotechnology 7: 756-757

 

Warmink, J.A. & van Elsas, J.D. 2009. Migratory response of soil bacteria to Lyophillum sp. strain Karsten in soil microcosms. Appl. Environ. Microbiol. 75: 2820-2830.

 

Warmink, J.A., R. Nazir and J.D. van Elsas. 2009. Universal and species-specific bacterial ‘fungiphiles’ in the mycospheres of different basidiomycetous fungi. Environ Microbiol 11: 300-312.